Wall clock time and date at job start Tue Mar 31 2020 06:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46908 * 109.47145 * 2 1 4 4 C 1.46896 * 110.99931 * 66.04649 * 3 2 1 5 5 C 1.53001 * 109.47329 * 58.50397 * 4 3 2 6 6 C 1.46900 * 111.00099 * 189.99856 * 3 2 1 7 7 C 1.53002 * 109.47076 * 163.84924 * 6 3 2 8 8 H 1.08999 * 110.62654 * 53.59796 * 7 6 3 9 9 C 1.55138 * 110.70344 * 290.29992 * 7 6 3 10 10 C 1.54904 * 101.65147 * 205.96123 * 9 7 6 11 11 N 1.47845 * 104.79389 * 37.07698 * 10 9 7 12 12 C 1.46902 * 110.99677 * 213.63335 * 11 10 9 13 13 C 1.53005 * 109.47403 * 290.84115 * 12 11 10 14 14 H 1.08995 * 109.46986 * 54.99544 * 13 12 11 15 15 C 1.53008 * 109.46747 * 295.00225 * 13 12 11 16 16 C 1.52990 * 109.47202 * 175.00353 * 13 12 11 17 17 C 1.50703 * 109.47263 * 185.00126 * 16 13 12 18 18 H 1.08006 * 119.99781 * 359.97438 * 17 16 13 19 19 C 1.37869 * 120.00370 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00120 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00146 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47011 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46762 * 119.99933 * 21 19 17 24 24 H 1.48497 * 109.47209 * 240.00059 * 21 19 17 25 25 C 1.47436 * 108.57009 * 335.89829 * 11 10 9 26 26 H 1.08995 * 109.47226 * 300.00217 * 1 2 3 27 27 H 1.09003 * 109.46979 * 60.00564 * 1 2 3 28 28 H 1.09005 * 109.47275 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47642 * 239.99964 * 2 1 3 30 30 H 1.09000 * 109.47654 * 119.99731 * 2 1 3 31 31 H 1.09000 * 109.47307 * 178.50704 * 4 3 2 32 32 H 1.09003 * 109.46918 * 298.50534 * 4 3 2 33 33 H 1.09000 * 109.46836 * 300.09676 * 5 4 3 34 34 H 1.08997 * 109.46672 * 60.09658 * 5 4 3 35 35 H 1.09001 * 109.46930 * 180.09543 * 5 4 3 36 36 H 1.09006 * 109.47047 * 43.84893 * 6 3 2 37 37 H 1.09004 * 109.47427 * 283.85052 * 6 3 2 38 38 H 1.08996 * 110.99422 * 324.05492 * 9 7 6 39 39 H 1.09002 * 110.98645 * 87.83678 * 9 7 6 40 40 H 1.08999 * 110.37906 * 278.24265 * 10 9 7 41 41 H 1.09010 * 110.37249 * 155.89870 * 10 9 7 42 42 H 1.09002 * 109.47074 * 170.83992 * 12 11 10 43 43 H 1.09004 * 109.47438 * 50.84407 * 12 11 10 44 44 H 1.08995 * 109.46822 * 299.99420 * 15 13 12 45 45 H 1.09001 * 109.47074 * 60.00220 * 15 13 12 46 46 H 1.08997 * 109.46525 * 179.97438 * 15 13 12 47 47 H 1.09000 * 109.47506 * 304.99835 * 16 13 12 48 48 H 1.09003 * 109.47501 * 64.99806 * 16 13 12 49 49 H 0.97001 * 120.00465 * 179.97438 * 20 19 17 50 50 H 1.08999 * 109.89183 * 120.39235 * 25 11 10 51 51 H 1.09000 * 109.89280 * 241.42815 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6702 2.0670 1.2533 5 6 2.2707 1.3023 2.4346 6 6 3.4685 1.4312 -0.2381 7 6 3.8759 2.8530 -0.6297 8 1 3.5260 3.5708 0.1122 9 6 3.3368 3.2092 -2.0402 10 6 4.3537 4.2827 -2.5018 11 7 5.6547 3.8237 -1.9702 12 6 6.5047 4.9639 -1.6021 13 6 6.9454 5.7013 -2.8682 14 1 6.0670 5.9835 -3.4486 15 6 7.8383 4.7850 -3.7074 16 6 7.7262 6.9586 -2.4805 17 6 8.0542 7.7488 -3.7211 18 1 7.7377 7.3899 -4.6894 19 6 8.7582 8.9299 -3.6201 20 7 9.1431 9.3673 -2.4411 21 14 9.1653 9.9090 -5.1580 22 1 8.6233 9.2075 -6.3494 23 1 8.5566 11.2600 -5.0602 24 1 10.6391 10.0382 -5.2869 25 6 5.4057 2.9530 -0.8068 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0674 3.0819 1.2377 32 1 0.5857 2.1028 1.3572 33 1 1.8747 0.2868 2.4492 34 1 3.3552 1.2679 2.3315 35 1 2.0099 1.8074 3.3647 36 1 3.7263 0.7443 -1.0443 37 1 3.9955 1.1394 0.6703 38 1 3.3604 2.3406 -2.6981 39 1 2.3306 3.6239 -1.9802 40 1 4.0948 5.2555 -2.0837 41 1 4.3849 4.3327 -3.5903 42 1 7.3834 4.6041 -1.0668 43 1 5.9429 5.6444 -0.9622 44 1 8.7166 4.5028 -3.1271 45 1 7.2820 3.8893 -3.9837 46 1 8.1518 5.3102 -4.6096 47 1 7.1217 7.5694 -1.8100 48 1 8.6498 6.6721 -1.9774 49 1 9.6388 10.1980 -2.3700 50 1 5.8234 1.9628 -0.9885 51 1 5.8570 3.3878 0.0851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602474287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:16 Heat of formation + Delta-G solvation = -14.491303 kcal Electronic energy + Delta-G solvation = -23003.927793 eV Core-core repulsion = 19937.298383 eV Total energy + Delta-G solvation = -3066.629411 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.56649 -38.11637 -35.26118 -32.74605 -31.75398 -31.22801 -29.62508 -28.60213 -26.77294 -25.57713 -24.72312 -23.76362 -22.68485 -20.97446 -20.37149 -19.62390 -18.76037 -16.63854 -16.29448 -16.28406 -15.30204 -15.16481 -14.57329 -14.43997 -14.25859 -13.83147 -13.37050 -13.21085 -13.03673 -12.87926 -12.67041 -12.50800 -12.25836 -12.19319 -11.92272 -11.64398 -11.51827 -11.35215 -11.29514 -11.12387 -11.01031 -10.80234 -10.77720 -10.72891 -10.62018 -10.37085 -10.23113 -10.10893 -9.57678 -9.06749 -8.88420 -8.48400 -8.29216 -7.91049 -5.93916 -3.94564 3.34592 3.42011 3.46528 3.62870 4.33452 4.52271 4.57542 4.60822 4.77172 4.87678 4.89514 4.99494 5.02372 5.11970 5.22857 5.30535 5.31028 5.41878 5.43013 5.53319 5.55845 5.64794 5.69017 5.70294 5.73637 5.75338 5.83328 5.89060 5.96127 6.02669 6.11165 6.17195 6.23512 6.29759 6.39964 6.47404 6.62595 6.78307 6.85331 6.86037 7.10325 7.19973 7.27358 7.41009 7.54556 7.74828 7.91156 8.07022 8.51700 9.12162 9.68640 11.17744 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038201 B = 0.002671 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.781301 B =10480.368592 C =10640.196691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.045 3.955 5 C -0.195 4.195 6 C 0.063 3.937 7 C -0.103 4.103 8 H 0.073 0.927 9 C -0.107 4.107 10 C 0.041 3.959 11 N -0.525 5.525 12 C 0.057 3.943 13 C -0.079 4.079 14 H 0.054 0.946 15 C -0.122 4.122 16 C 0.026 3.974 17 C -0.509 4.509 18 H 0.057 0.943 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.047 3.953 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.028 0.972 44 H 0.038 0.962 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.015 0.985 49 H 0.258 0.742 50 H 0.071 0.929 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 -18.965 7.573 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.253 4.253 6 C -0.065 4.065 7 C -0.123 4.123 8 H 0.091 0.909 9 C -0.145 4.145 10 C -0.087 4.087 11 N -0.249 5.249 12 C -0.071 4.071 13 C -0.098 4.098 14 H 0.073 0.927 15 C -0.179 4.179 16 C -0.011 4.011 17 C -0.547 4.547 18 H 0.075 0.925 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.082 4.082 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.712 -18.854 6.876 25.487 hybrid contribution 0.360 0.764 0.664 1.074 sum -15.352 -18.090 7.540 24.896 Atomic orbital electron populations 1.21779 0.95004 1.01319 1.02467 1.22135 0.96055 0.89294 1.00777 1.62232 1.14034 1.15558 1.33813 1.22206 1.00839 0.98280 0.86978 1.22428 1.01758 1.01344 0.99787 1.22146 0.87193 0.97053 1.00079 1.22369 0.95483 0.96295 0.98139 0.90908 1.22595 0.98229 0.98732 0.94982 1.23075 0.88097 0.96759 1.00739 1.63608 1.13813 1.18809 1.28638 1.22519 0.95814 0.90458 0.98300 1.21165 0.98510 0.96204 0.93885 0.92727 1.21571 0.98388 0.98059 0.99887 1.19138 0.94743 0.90607 0.96656 1.21281 1.34298 1.05695 0.93458 0.92528 1.25027 0.96167 0.97692 0.95767 1.69980 1.39175 1.21939 1.22702 0.86581 0.78001 0.80022 0.83682 1.19742 1.21148 1.21110 1.22813 0.94061 0.98434 0.92874 0.92772 0.91837 0.92563 0.90979 0.94540 0.90553 0.90638 0.92403 0.92318 0.92121 0.90693 0.94330 0.91135 0.91048 0.93692 0.90445 0.91612 0.95394 0.94332 0.93920 0.92873 0.97037 0.96662 0.93215 0.91082 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.84 37.15 0.37 -0.62 16 2 C 0.05 0.34 5.40 -3.82 -0.02 0.32 16 3 N -0.53 -4.64 4.55 -234.62 -1.07 -5.71 16 4 C 0.04 0.36 5.68 -3.83 -0.02 0.34 16 5 C -0.19 -1.42 9.26 37.16 0.34 -1.07 16 6 C 0.06 0.58 4.15 -3.82 -0.02 0.57 16 7 C -0.10 -1.12 2.96 -88.79 -0.26 -1.38 16 8 H 0.07 0.83 6.56 -51.93 -0.34 0.49 16 9 C -0.11 -1.25 6.41 -24.60 -0.16 -1.41 16 10 C 0.04 0.59 5.72 -2.30 -0.01 0.57 16 11 N -0.52 -8.11 4.62 -231.24 -1.07 -9.18 16 12 C 0.06 1.03 3.95 -3.82 -0.02 1.01 16 13 C -0.08 -1.67 2.33 -90.62 -0.21 -1.88 16 14 H 0.05 1.18 7.34 -51.93 -0.38 0.80 16 15 C -0.12 -2.46 8.89 37.16 0.33 -2.12 16 16 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 17 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 18 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.05 0.60 6.46 -2.84 -0.02 0.58 16 26 H 0.05 0.35 6.58 -51.93 -0.34 0.01 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 30 H 0.04 0.27 5.95 -51.93 -0.31 -0.04 16 31 H 0.08 0.67 6.47 -51.93 -0.34 0.34 16 32 H 0.08 0.57 6.54 -51.93 -0.34 0.23 16 33 H 0.06 0.40 6.24 -51.93 -0.32 0.08 16 34 H 0.06 0.47 6.31 -51.93 -0.33 0.14 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.70 7.70 -51.93 -0.40 0.30 16 37 H 0.04 0.35 5.99 -51.93 -0.31 0.04 16 38 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.04 0.69 7.62 -51.93 -0.40 0.29 16 41 H 0.08 1.15 8.12 -51.92 -0.42 0.73 16 42 H 0.07 1.19 8.03 -51.93 -0.42 0.78 16 43 H 0.03 0.52 7.85 -51.93 -0.41 0.11 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 46 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.07 0.86 7.82 -51.93 -0.41 0.46 16 51 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -29.75 378.26 -10.83 -40.58 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -9.90 Total: -3.87 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -0.21 Total: -17.87 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -1.40 Total: -41.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.75 -10.83 -40.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602474287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.089 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds