Wall clock time and date at job start Tue Mar 31 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.46971 * 2 1 4 4 C 1.46905 * 111.00114 * 299.84539 * 3 2 1 5 5 C 1.52995 * 109.47319 * 298.22248 * 4 3 2 6 6 C 1.46901 * 111.00321 * 63.80007 * 3 2 1 7 7 C 1.53005 * 109.46885 * 78.64654 * 6 3 2 8 8 H 1.09005 * 110.62707 * 50.30220 * 7 6 3 9 9 C 1.55136 * 110.70657 * 287.00604 * 7 6 3 10 10 C 1.54912 * 101.65155 * 205.96332 * 9 7 6 11 11 N 1.47840 * 104.79467 * 37.06940 * 10 9 7 12 12 C 1.46902 * 111.00122 * 213.63682 * 11 10 9 13 13 C 1.53004 * 109.46999 * 295.05455 * 12 11 10 14 14 H 1.08998 * 109.47101 * 57.54345 * 13 12 11 15 15 C 1.52996 * 109.47160 * 177.54384 * 13 12 11 16 16 C 1.53004 * 109.46936 * 297.54550 * 13 12 11 17 17 C 1.50701 * 109.47111 * 175.00123 * 16 13 12 18 18 H 1.07997 * 119.99745 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99990 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99922 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99865 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47379 * 89.99874 * 21 19 17 23 23 H 1.48503 * 109.47280 * 210.00002 * 21 19 17 24 24 H 1.48499 * 109.47255 * 329.99987 * 21 19 17 25 25 C 1.47448 * 108.57096 * 335.90636 * 11 10 9 26 26 H 1.09001 * 109.47293 * 64.85598 * 1 2 3 27 27 H 1.09001 * 109.46752 * 184.86061 * 1 2 3 28 28 H 1.08997 * 109.46997 * 304.85558 * 1 2 3 29 29 H 1.08998 * 109.47112 * 240.00201 * 2 1 3 30 30 H 1.08997 * 109.47370 * 119.99757 * 2 1 3 31 31 H 1.08996 * 109.46925 * 58.22331 * 4 3 2 32 32 H 1.09002 * 109.47227 * 178.21931 * 4 3 2 33 33 H 1.09001 * 109.46894 * 65.24710 * 5 4 3 34 34 H 1.08996 * 109.47293 * 185.24917 * 5 4 3 35 35 H 1.09001 * 109.47160 * 305.25444 * 5 4 3 36 36 H 1.08996 * 109.46740 * 318.65090 * 6 3 2 37 37 H 1.09000 * 109.47351 * 198.64598 * 6 3 2 38 38 H 1.09000 * 110.99053 * 324.05296 * 9 7 6 39 39 H 1.08998 * 110.99011 * 87.83837 * 9 7 6 40 40 H 1.08995 * 110.37135 * 278.24217 * 10 9 7 41 41 H 1.09002 * 110.37291 * 155.89803 * 10 9 7 42 42 H 1.08997 * 109.47263 * 175.05202 * 12 11 10 43 43 H 1.08993 * 109.47047 * 55.05224 * 12 11 10 44 44 H 1.08994 * 109.46930 * 185.03434 * 15 13 12 45 45 H 1.08994 * 109.47289 * 305.03887 * 15 13 12 46 46 H 1.09005 * 109.47107 * 65.04037 * 15 13 12 47 47 H 1.09003 * 109.46876 * 295.00063 * 16 13 12 48 48 H 1.09000 * 109.47290 * 54.99580 * 16 13 12 49 49 H 0.96995 * 119.99522 * 180.02562 * 20 19 17 50 50 H 1.08997 * 109.89251 * 120.39344 * 25 11 10 51 51 H 1.08999 * 109.88623 * 241.42661 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5516 2.1089 -1.1896 5 6 2.1015 1.4329 -2.4471 6 6 1.6243 2.0832 1.2305 7 6 2.5527 1.6676 2.3734 8 1 3.5966 1.7628 2.0742 9 6 2.2404 0.2199 2.8351 10 6 2.7285 0.2481 4.3051 11 7 2.3723 1.5965 4.7954 12 6 3.3655 2.0849 5.7613 13 6 3.3414 1.1999 7.0092 14 1 3.5362 0.1659 6.7250 15 6 4.4175 1.6710 7.9893 16 6 1.9674 1.2955 7.6756 17 6 1.9022 0.3320 8.8326 18 1 2.7552 -0.2869 9.0686 19 6 0.7535 0.2406 9.5897 20 7 -0.2854 0.9939 9.3019 21 14 0.6725 -0.9542 11.0233 22 1 1.1366 -0.2757 12.2600 23 1 -0.7278 -1.4135 11.2064 24 1 1.5443 -2.1233 10.7432 25 6 2.2693 2.5048 3.6384 26 1 -0.3634 0.4366 -0.9303 27 1 -0.3633 -1.0240 0.0871 28 1 -0.3633 0.5873 0.8433 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.4621 2.0963 -1.2172 32 1 1.9021 3.1402 -1.1486 33 1 1.6771 0.4329 -2.5372 34 1 1.8323 2.0222 -3.3236 35 1 3.1869 1.3618 -2.3763 36 1 0.5970 1.8206 1.4831 37 1 1.6968 3.1599 1.0767 38 1 1.1710 0.0155 2.7827 39 1 2.8039 -0.5067 2.2499 40 1 3.8076 0.1010 4.3494 41 1 2.2161 -0.5159 4.8898 42 1 3.1277 3.1117 6.0393 43 1 4.3575 2.0510 5.3109 44 1 4.4608 0.9876 8.8373 45 1 5.3845 1.6881 7.4866 46 1 4.1739 2.6731 8.3425 47 1 1.8098 2.3109 8.0391 48 1 1.1934 1.0451 6.9501 49 1 -1.0933 0.9298 9.8348 50 1 1.2657 2.9270 3.5865 51 1 3.0039 3.3050 3.7287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602474288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:18 Heat of formation + Delta-G solvation = -6.646949 kcal Electronic energy + Delta-G solvation = -23373.011291 eV Core-core repulsion = 20306.722037 eV Total energy + Delta-G solvation = -3066.289254 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.61847 -37.98325 -35.20586 -32.62105 -31.72285 -31.13063 -29.75307 -28.43658 -26.91384 -25.46235 -24.69468 -23.36070 -22.74076 -20.98013 -20.20321 -19.83160 -18.66049 -16.62196 -16.25238 -16.01503 -15.30974 -15.21945 -14.59682 -14.39830 -13.87402 -13.67799 -13.24762 -13.22361 -13.02300 -12.86875 -12.56909 -12.36540 -12.28342 -11.96866 -11.82486 -11.74544 -11.62460 -11.36151 -11.25671 -11.02553 -11.01357 -10.79240 -10.70406 -10.60488 -10.47573 -10.26938 -10.20865 -10.03661 -9.57467 -9.01486 -8.78589 -8.41534 -8.20071 -7.70594 -5.84927 -3.85247 3.38482 3.44788 3.47834 3.73501 4.42623 4.56606 4.64164 4.74644 4.81701 4.97706 4.98336 5.10300 5.11360 5.24458 5.28593 5.37072 5.46659 5.50304 5.53952 5.56248 5.63975 5.68422 5.74437 5.77447 5.80483 5.86622 5.87901 5.93281 5.98799 6.05111 6.14240 6.17928 6.22916 6.32527 6.41346 6.46053 6.49364 6.57515 6.95042 6.96207 7.03116 7.10916 7.35639 7.49857 7.65893 7.89943 8.12182 8.26124 8.61629 9.23054 9.76635 11.26184 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025528 B = 0.003232 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.587017 B = 8661.487452 C = 9216.206477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 N -0.535 5.535 4 C 0.046 3.954 5 C -0.149 4.149 6 C 0.059 3.941 7 C -0.100 4.100 8 H 0.079 0.921 9 C -0.124 4.124 10 C 0.046 3.954 11 N -0.515 5.515 12 C 0.061 3.939 13 C -0.085 4.085 14 H 0.054 0.946 15 C -0.132 4.132 16 C 0.036 3.964 17 C -0.512 4.512 18 H 0.051 0.949 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.276 1.276 25 C 0.048 3.952 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.017 0.983 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.046 0.954 47 H 0.009 0.991 48 H 0.033 0.967 49 H 0.257 0.743 50 H 0.072 0.928 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.962 1.355 -21.446 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.097 4.097 3 N -0.258 5.258 4 C -0.082 4.082 5 C -0.207 4.207 6 C -0.069 4.069 7 C -0.120 4.120 8 H 0.097 0.903 9 C -0.162 4.162 10 C -0.082 4.082 11 N -0.238 5.238 12 C -0.067 4.067 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.190 4.190 16 C -0.001 4.001 17 C -0.551 4.551 18 H 0.069 0.931 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.713 3.287 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.201 1.201 25 C -0.081 4.081 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.027 0.973 48 H 0.051 0.949 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.826 1.376 -21.143 21.730 hybrid contribution -0.294 -0.520 0.512 0.787 sum 4.532 0.857 -20.631 21.140 Atomic orbital electron populations 1.22428 0.98422 1.02513 1.01920 1.22547 0.92968 0.90529 1.03662 1.62261 1.59415 1.02368 1.01797 1.22114 0.97746 0.97923 0.90401 1.21799 1.02007 1.00485 0.96370 1.22177 0.97527 0.97967 0.89191 1.22352 0.99927 0.95662 0.94023 0.90267 1.22942 1.01471 0.96129 0.95648 1.23037 0.98421 0.92513 0.94221 1.63532 1.47146 1.01384 1.11753 1.22438 0.91031 0.99625 0.93595 1.21225 0.99276 0.97103 0.92736 0.92762 1.21693 0.96293 1.01345 0.99623 1.19041 0.90129 0.96310 0.94608 1.21331 0.98645 1.21640 1.13453 0.93070 1.24992 0.95969 0.95971 0.97546 1.69982 1.03740 1.39901 1.39847 0.86722 0.77050 0.81672 0.83276 1.20903 1.21408 1.20066 1.22828 1.01383 0.95196 0.88702 0.92810 0.92070 0.91974 0.90947 0.89004 0.94670 0.91085 0.92781 0.92543 0.91847 0.93312 0.91239 0.90916 0.90912 0.94169 0.89869 0.91553 0.96525 0.92077 0.95402 0.93529 0.97301 0.94851 0.93318 0.90956 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 9.24 37.16 0.34 -1.39 16 2 C 0.03 0.28 5.46 -3.83 -0.02 0.26 16 3 N -0.53 -5.22 4.66 -234.63 -1.09 -6.31 16 4 C 0.05 0.39 5.31 -3.82 -0.02 0.37 16 5 C -0.15 -1.09 9.57 37.16 0.36 -0.73 16 6 C 0.06 0.62 4.43 -3.82 -0.02 0.61 16 7 C -0.10 -1.18 3.15 -88.80 -0.28 -1.46 16 8 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 9 C -0.12 -1.55 4.61 -24.59 -0.11 -1.66 16 10 C 0.05 0.71 5.54 -2.30 -0.01 0.70 16 11 N -0.51 -8.92 4.45 -231.25 -1.03 -9.95 16 12 C 0.06 1.10 3.93 -3.82 -0.01 1.08 16 13 C -0.08 -1.77 2.26 -90.62 -0.20 -1.98 16 14 H 0.05 1.16 7.27 -51.93 -0.38 0.78 16 15 C -0.13 -2.54 8.92 37.16 0.33 -2.21 16 16 C 0.04 0.95 4.38 -27.88 -0.12 0.83 16 17 C -0.51 -14.63 8.47 -34.44 -0.29 -14.93 16 18 H 0.05 1.43 7.06 -52.49 -0.37 1.06 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 21 Si 0.88 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.05 0.67 6.48 -2.83 -0.02 0.65 16 26 H 0.05 0.45 6.64 -51.93 -0.34 0.11 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.62 5.99 -51.93 -0.31 0.31 16 29 H 0.07 0.62 6.46 -51.93 -0.34 0.28 16 30 H 0.09 0.90 4.11 -51.93 -0.21 0.68 16 31 H 0.04 0.30 6.32 -51.93 -0.33 -0.03 16 32 H 0.07 0.58 7.92 -51.93 -0.41 0.17 16 33 H 0.05 0.39 6.72 -51.93 -0.35 0.04 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.54 5.52 -51.93 -0.29 0.26 16 37 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 38 H 0.07 0.94 7.77 -51.93 -0.40 0.54 16 39 H 0.07 0.81 6.60 -51.93 -0.34 0.47 16 40 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 43 H 0.02 0.27 7.97 -51.93 -0.41 -0.14 16 44 H 0.06 1.25 7.10 -51.93 -0.37 0.88 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.03 0.95 7.53 -51.93 -0.39 0.56 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.07 1.04 7.82 -51.93 -0.41 0.63 16 51 H 0.05 0.66 7.58 -51.93 -0.39 0.27 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -30.30 373.82 -10.74 -41.04 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -9.79 Total: -2.38 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -0.18 Total: -18.34 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -1.39 Total: -43.05 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.30 -10.74 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602474288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.394 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds