Wall clock time and date at job start Tue Mar 31 2020 06:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47298 * 2 1 4 4 C 1.46905 * 110.99833 * 297.47440 * 3 2 1 5 5 C 1.53008 * 109.46954 * 288.80540 * 4 3 2 6 6 C 1.46897 * 111.00076 * 61.42103 * 3 2 1 7 7 C 1.52999 * 109.46728 * 66.05038 * 6 3 2 8 8 H 1.08999 * 110.28020 * 307.08639 * 7 6 3 9 9 C 1.54594 * 110.39244 * 69.23624 * 7 6 3 10 10 C 1.54945 * 102.92144 * 140.91748 * 9 7 6 11 11 N 1.48531 * 103.22556 * 322.58180 * 10 9 7 12 12 C 1.46900 * 111.00061 * 159.72167 * 11 10 9 13 13 C 1.53007 * 109.46933 * 58.31445 * 12 11 10 14 14 H 1.09004 * 109.47203 * 303.56834 * 13 12 11 15 15 C 1.52999 * 109.46999 * 183.57014 * 13 12 11 16 16 C 1.52996 * 109.46846 * 63.57140 * 13 12 11 17 17 C 1.50702 * 109.47071 * 184.99807 * 16 13 12 18 18 H 1.07999 * 119.99836 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00289 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99903 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00103 * 179.72694 * 19 17 16 22 22 H 1.48497 * 109.47143 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47256 * 120.00604 * 21 19 17 24 24 H 1.48506 * 109.46868 * 240.00191 * 21 19 17 25 25 C 1.47901 * 105.81956 * 39.21142 * 11 10 9 26 26 H 1.09008 * 109.47031 * 59.28571 * 1 2 3 27 27 H 1.08997 * 109.47021 * 179.27902 * 1 2 3 28 28 H 1.08997 * 109.47198 * 299.28519 * 1 2 3 29 29 H 1.09003 * 109.47263 * 240.00282 * 2 1 3 30 30 H 1.08998 * 109.47401 * 119.99743 * 2 1 3 31 31 H 1.09000 * 109.47613 * 48.80378 * 4 3 2 32 32 H 1.08996 * 109.47015 * 168.80609 * 4 3 2 33 33 H 1.09000 * 109.46768 * 182.69158 * 5 4 3 34 34 H 1.08997 * 109.46837 * 302.69072 * 5 4 3 35 35 H 1.09001 * 109.46815 * 62.68534 * 5 4 3 36 36 H 1.08997 * 109.47470 * 306.05452 * 6 3 2 37 37 H 1.08997 * 109.47082 * 186.04833 * 6 3 2 38 38 H 1.09007 * 110.72363 * 259.27017 * 9 7 6 39 39 H 1.08995 * 110.72929 * 22.37974 * 9 7 6 40 40 H 1.09000 * 110.66528 * 204.14862 * 10 9 7 41 41 H 1.08995 * 110.66918 * 81.02033 * 10 9 7 42 42 H 1.09004 * 109.47152 * 298.32176 * 12 11 10 43 43 H 1.08998 * 109.47351 * 178.31639 * 12 11 10 44 44 H 1.08994 * 109.47093 * 294.43185 * 15 13 12 45 45 H 1.08998 * 109.47287 * 54.43620 * 15 13 12 46 46 H 1.09005 * 109.46728 * 174.43059 * 15 13 12 47 47 H 1.08998 * 109.47105 * 64.99822 * 16 13 12 48 48 H 1.09004 * 109.47365 * 305.00002 * 16 13 12 49 49 H 0.96997 * 120.00185 * 179.97438 * 20 19 17 50 50 H 1.08995 * 109.92235 * 94.02157 * 25 11 10 51 51 H 1.09000 * 109.91707 * 215.31447 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5986 2.0922 -1.2168 5 6 2.3775 1.5502 -2.4171 6 6 1.5767 2.1000 1.2043 7 6 2.2375 1.4804 2.4373 8 1 2.0654 0.4042 2.4574 9 6 3.7538 1.7815 2.4444 10 6 4.0450 2.0584 3.9408 11 7 2.8339 2.7898 4.3930 12 6 2.6939 2.7239 5.8539 13 6 3.9411 3.3163 6.5130 14 1 4.8258 2.7883 6.1570 15 6 3.8349 3.1670 8.0320 16 6 4.0527 4.7991 6.1528 17 6 5.3434 5.3530 6.6990 18 1 6.0169 4.7114 7.2478 19 6 5.6650 6.6784 6.4973 20 7 4.8450 7.4596 5.8286 21 14 7.2612 7.3668 7.1809 22 1 7.9977 6.2931 7.8950 23 1 8.0954 7.8830 6.0661 24 1 6.9592 8.4719 8.1259 25 6 1.6918 2.1329 3.7210 26 1 -0.3633 0.5249 -0.8836 27 1 -0.3633 -1.0276 -0.0129 28 1 -0.3633 0.5027 0.8963 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.5315 1.9375 -1.3763 32 1 1.7985 3.1579 -1.1052 33 1 2.0999 2.1073 -3.3119 34 1 3.4466 1.6616 -2.2367 35 1 2.1407 0.4955 -2.5575 36 1 0.4933 2.0223 1.2951 37 1 1.8607 3.1496 1.1287 38 1 4.3202 0.9183 2.0946 39 1 3.9757 2.6587 1.8367 40 1 4.9334 2.6802 4.0512 41 1 4.1576 1.1238 4.4902 42 1 2.5795 1.6844 6.1614 43 1 1.8159 3.2923 6.1608 44 1 3.0086 3.7751 8.3999 45 1 3.6564 2.1214 8.2827 46 1 4.7643 3.4982 8.4954 47 1 3.2124 5.3422 6.5852 48 1 4.0389 4.9117 5.0687 49 1 5.0710 8.3922 5.6870 50 1 1.2658 1.3704 4.3730 51 1 0.9338 2.8741 3.4675 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602474290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:20 Heat of formation + Delta-G solvation = -10.815378 kcal Electronic energy + Delta-G solvation = -23350.948595 eV Core-core repulsion = 20284.478584 eV Total energy + Delta-G solvation = -3066.470011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.48109 -37.97821 -35.22036 -32.59675 -31.74143 -31.14814 -29.51613 -28.44895 -26.90861 -25.45859 -24.56174 -23.39444 -22.77538 -21.04721 -20.34760 -19.40725 -18.56588 -16.55404 -16.20055 -16.16343 -15.34959 -15.03217 -14.53286 -14.41831 -13.90880 -13.89552 -13.33765 -13.16060 -12.82888 -12.81601 -12.57304 -12.40209 -12.15538 -11.95218 -11.81153 -11.62053 -11.49478 -11.31815 -11.15030 -11.06200 -10.93509 -10.80354 -10.76815 -10.63415 -10.51858 -10.25276 -10.19420 -10.04078 -9.57468 -9.01503 -8.77743 -8.35350 -8.20631 -7.81343 -5.84976 -3.85479 3.38087 3.45610 3.49206 3.76797 4.46960 4.56891 4.70932 4.73033 4.91674 4.97357 5.01561 5.08951 5.13310 5.21931 5.37056 5.41796 5.45126 5.50373 5.58105 5.60938 5.68563 5.74441 5.78959 5.80341 5.80770 5.86956 5.91964 5.96425 6.04284 6.12708 6.13889 6.17690 6.32606 6.34229 6.41824 6.49322 6.56834 6.59552 6.99459 6.99721 7.01987 7.09881 7.34180 7.42670 7.63816 7.89825 8.10826 8.24763 8.61047 9.22832 9.76656 11.26094 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.003425 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.795223 B = 8173.541213 C = 8980.344157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.044 3.956 5 C -0.146 4.146 6 C 0.062 3.938 7 C -0.092 4.092 8 H 0.069 0.931 9 C -0.102 4.102 10 C 0.035 3.965 11 N -0.501 5.501 12 C 0.056 3.944 13 C -0.086 4.086 14 H 0.056 0.944 15 C -0.131 4.131 16 C 0.036 3.964 17 C -0.512 4.512 18 H 0.052 0.948 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.884 3.116 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.040 3.960 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.034 0.966 42 H 0.016 0.984 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.027 0.973 46 H 0.060 0.940 47 H 0.009 0.991 48 H 0.033 0.967 49 H 0.257 0.743 50 H 0.036 0.964 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -15.559 -12.312 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.083 4.083 3 N -0.256 5.256 4 C -0.084 4.084 5 C -0.204 4.204 6 C -0.066 4.066 7 C -0.111 4.111 8 H 0.087 0.913 9 C -0.140 4.140 10 C -0.093 4.093 11 N -0.225 5.225 12 C -0.071 4.071 13 C -0.105 4.105 14 H 0.074 0.926 15 C -0.189 4.189 16 C -0.001 4.001 17 C -0.551 4.551 18 H 0.070 0.930 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.713 3.287 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.213 1.213 25 C -0.089 4.089 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.052 0.948 42 H 0.034 0.966 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.079 0.921 47 H 0.028 0.972 48 H 0.051 0.949 49 H 0.066 0.934 50 H 0.054 0.946 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.132 -14.828 -12.492 21.025 hybrid contribution -0.185 -0.339 0.682 0.783 sum -8.317 -15.167 -11.810 20.945 Atomic orbital electron populations 1.22433 0.98618 1.02161 1.02142 1.22194 0.92615 0.90800 1.02641 1.62227 1.59442 1.02054 1.01896 1.22138 0.97403 0.98625 0.90199 1.21760 1.01384 1.00613 0.96611 1.22270 0.96983 0.98441 0.88875 1.21990 0.96613 0.99089 0.93441 0.91264 1.22393 0.93998 1.01625 0.96000 1.23261 0.95334 0.96263 0.94437 1.64750 1.01200 1.49803 1.06723 1.22420 1.00481 0.97328 0.86919 1.21268 0.94574 1.00969 0.93707 0.92608 1.21693 1.02152 0.98200 0.96884 1.19054 0.95928 0.87342 0.97824 1.21359 1.04999 0.94707 1.34027 0.93002 1.24991 0.96555 0.97333 0.95575 1.69991 1.36228 1.05827 1.41338 0.86665 0.84300 0.79009 0.78767 1.19923 1.21178 1.21257 1.22886 0.95068 0.96700 0.94257 0.92470 0.92299 0.92199 0.90863 0.90565 0.94530 0.90839 0.92609 0.91759 0.93042 0.94616 0.90102 0.91728 0.90513 0.89262 0.94763 0.96558 0.91437 0.93495 0.95419 0.92070 0.97235 0.94894 0.93356 0.94574 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.55 9.27 37.15 0.34 -1.21 16 2 C 0.05 0.40 5.71 -3.83 -0.02 0.38 16 3 N -0.53 -5.44 4.54 -234.63 -1.06 -6.51 16 4 C 0.04 0.41 5.55 -3.82 -0.02 0.39 16 5 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 6 C 0.06 0.69 3.83 -3.83 -0.01 0.68 16 7 C -0.09 -1.12 2.94 -89.26 -0.26 -1.38 16 8 H 0.07 0.78 6.29 -51.93 -0.33 0.45 16 9 C -0.10 -1.39 6.48 -24.87 -0.16 -1.56 16 10 C 0.03 0.56 5.34 -1.89 -0.01 0.55 16 11 N -0.50 -8.74 4.66 -230.44 -1.07 -9.82 16 12 C 0.06 1.02 4.24 -3.82 -0.02 1.00 16 13 C -0.09 -1.81 2.13 -90.62 -0.19 -2.00 16 14 H 0.06 1.18 6.71 -51.93 -0.35 0.83 16 15 C -0.13 -2.54 8.91 37.16 0.33 -2.21 16 16 C 0.04 0.93 4.39 -27.88 -0.12 0.81 16 17 C -0.51 -14.61 8.48 -34.44 -0.29 -14.90 16 18 H 0.05 1.45 7.06 -52.49 -0.37 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 21 Si 0.88 22.09 29.54 -169.99 -5.02 17.07 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.04 0.56 6.36 -2.75 -0.02 0.54 16 26 H 0.06 0.45 6.21 -51.92 -0.32 0.13 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.52 6.34 -51.93 -0.33 0.19 16 29 H 0.07 0.60 6.63 -51.93 -0.34 0.26 16 30 H 0.08 0.69 6.29 -51.93 -0.33 0.37 16 31 H 0.04 0.32 5.87 -51.93 -0.30 0.01 16 32 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.39 6.80 -51.93 -0.35 0.04 16 36 H 0.04 0.38 6.06 -51.93 -0.31 0.07 16 37 H 0.08 1.03 7.73 -51.93 -0.40 0.63 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.15 7.77 -51.93 -0.40 0.74 16 40 H 0.09 1.64 7.57 -51.93 -0.39 1.25 16 41 H 0.03 0.52 8.01 -51.93 -0.42 0.11 16 42 H 0.02 0.27 7.97 -51.93 -0.41 -0.14 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.25 7.12 -51.93 -0.37 0.88 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.03 0.93 7.57 -51.93 -0.39 0.54 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.04 0.48 7.67 -51.93 -0.40 0.08 16 51 H 0.07 1.04 7.68 -51.93 -0.40 0.64 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -30.13 376.93 -10.78 -40.91 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -9.85 Total: -2.43 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.19 Total: -18.19 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: -1.40 Total: -43.05 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.13 -10.78 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602474290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.098 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds