Wall clock time and date at job start Tue Mar 31 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.47127 * 2 1 4 4 C 1.46894 * 110.99915 * 296.68003 * 3 2 1 5 5 C 1.52997 * 109.47478 * 288.20616 * 4 3 2 6 6 C 1.46895 * 111.00127 * 60.63647 * 3 2 1 7 7 C 1.52998 * 109.47224 * 66.04597 * 6 3 2 8 8 H 1.09002 * 110.35300 * 307.13947 * 7 6 3 9 9 C 1.54594 * 110.31143 * 69.28138 * 7 6 3 10 10 C 1.54939 * 102.92437 * 140.87192 * 9 7 6 11 11 N 1.48531 * 103.22711 * 322.59121 * 10 9 7 12 12 C 1.46898 * 111.00307 * 159.71866 * 11 10 9 13 13 C 1.53007 * 109.47150 * 52.59978 * 12 11 10 14 14 H 1.08997 * 109.46777 * 305.00383 * 13 12 11 15 15 C 1.52999 * 109.46809 * 65.00302 * 13 12 11 16 16 C 1.52993 * 109.47158 * 185.00157 * 13 12 11 17 17 C 1.50699 * 109.46977 * 175.00022 * 16 13 12 18 18 H 1.08000 * 120.00046 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00014 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99966 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99988 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47244 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46876 * 120.00170 * 21 19 17 24 24 H 1.48500 * 109.47004 * 239.99721 * 21 19 17 25 25 C 1.47897 * 105.82396 * 39.20224 * 11 10 9 26 26 H 1.08997 * 109.46973 * 301.06933 * 1 2 3 27 27 H 1.09003 * 109.46771 * 61.06679 * 1 2 3 28 28 H 1.08997 * 109.47529 * 181.06754 * 1 2 3 29 29 H 1.08992 * 109.46989 * 239.99574 * 2 1 3 30 30 H 1.09003 * 109.46689 * 119.99987 * 2 1 3 31 31 H 1.09004 * 109.47244 * 48.20193 * 4 3 2 32 32 H 1.08996 * 109.47315 * 168.20173 * 4 3 2 33 33 H 1.09007 * 109.47032 * 299.79807 * 5 4 3 34 34 H 1.09000 * 109.47371 * 59.79501 * 5 4 3 35 35 H 1.09001 * 109.47315 * 179.80200 * 5 4 3 36 36 H 1.08998 * 109.47558 * 306.04562 * 6 3 2 37 37 H 1.09001 * 109.47081 * 186.04451 * 6 3 2 38 38 H 1.08998 * 110.72893 * 259.23821 * 9 7 6 39 39 H 1.09007 * 110.72136 * 22.34188 * 9 7 6 40 40 H 1.08998 * 110.66323 * 81.02132 * 10 9 7 41 41 H 1.08995 * 110.66553 * 204.15343 * 10 9 7 42 42 H 1.09003 * 109.47443 * 172.60060 * 12 11 10 43 43 H 1.08996 * 109.47278 * 292.60446 * 12 11 10 44 44 H 1.09000 * 109.47117 * 59.99991 * 15 13 12 45 45 H 1.08998 * 109.46949 * 180.02562 * 15 13 12 46 46 H 1.09007 * 109.47280 * 300.00285 * 15 13 12 47 47 H 1.09000 * 109.47036 * 295.00156 * 16 13 12 48 48 H 1.09003 * 109.47013 * 55.00132 * 16 13 12 49 49 H 0.97007 * 119.99850 * 179.97438 * 20 19 17 50 50 H 1.08999 * 109.92403 * 215.32160 * 25 11 10 51 51 H 1.09000 * 109.91668 * 94.01950 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6146 2.0865 -1.2254 5 6 2.4197 1.5495 -2.4104 6 6 1.5612 2.1055 1.1952 7 6 2.2059 1.4915 2.4395 8 1 2.0350 0.4152 2.4631 9 6 3.7216 1.7948 2.4636 10 6 3.9941 2.0800 3.9620 11 7 2.7766 2.8119 4.3955 12 6 2.6188 2.7534 5.8548 13 6 3.9124 3.2184 6.5268 14 1 4.7480 2.6250 6.1558 15 6 4.1523 4.6947 6.2044 16 6 3.7929 3.0400 8.0416 17 6 5.1082 3.3816 8.6928 18 1 5.9455 3.6950 8.0870 19 6 5.2428 3.2940 10.0622 20 7 4.2230 2.9128 10.8001 21 14 6.8731 3.7181 10.8696 22 1 7.8526 4.1173 9.8274 23 1 6.6770 4.8419 11.8204 24 1 7.3853 2.5328 11.6031 25 6 1.6437 2.1500 3.7130 26 1 -0.3633 0.5303 0.8802 27 1 -0.3633 0.4972 -0.8994 28 1 -0.3634 -1.0274 0.0191 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 0.5520 1.9221 -1.4038 32 1 1.8031 3.1541 -1.1120 33 1 3.4822 1.7171 -2.2337 34 1 2.2340 0.4812 -2.5216 35 1 2.1166 2.0677 -3.3202 36 1 0.4767 2.0283 1.2723 37 1 1.8462 3.1548 1.1185 38 1 4.2934 0.9307 2.1252 39 1 3.9498 2.6692 1.8541 40 1 4.1012 1.1484 4.5176 41 1 4.8803 2.7035 4.0799 42 1 1.7979 3.4035 6.1579 43 1 2.4010 1.7288 6.1560 44 1 3.3165 5.2880 6.5754 45 1 5.0740 5.0258 6.6827 46 1 4.2373 4.8218 5.1252 47 1 3.0152 3.7006 8.4250 48 1 3.5340 2.0053 8.2662 49 1 4.3178 2.8508 11.7635 50 1 0.8879 2.8887 3.4463 51 1 1.2108 1.3902 4.3637 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602474292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:23 Heat of formation + Delta-G solvation = -12.904190 kcal Electronic energy + Delta-G solvation = -23081.707262 eV Core-core repulsion = 20015.146674 eV Total energy + Delta-G solvation = -3066.560588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.60349 -38.08927 -35.27345 -32.75950 -31.80015 -31.16510 -29.63673 -28.55881 -26.79409 -25.54793 -24.76369 -23.69837 -22.72038 -21.08392 -20.42109 -19.52336 -18.57840 -16.67118 -16.29785 -16.24521 -15.36727 -15.15260 -14.57911 -14.42989 -14.19865 -13.97948 -13.43438 -13.27441 -12.96378 -12.79863 -12.59769 -12.47611 -12.26269 -12.11458 -11.84890 -11.64553 -11.56838 -11.33651 -11.25977 -11.15750 -10.98011 -10.82084 -10.77582 -10.68893 -10.65762 -10.31248 -10.25185 -10.07785 -9.59520 -9.10915 -8.89603 -8.46082 -8.30522 -8.01698 -5.95206 -3.96016 3.33689 3.41196 3.45504 3.65977 4.35904 4.51131 4.62029 4.62330 4.79691 4.87778 4.92388 5.00285 5.02442 5.13732 5.26559 5.33623 5.35545 5.40692 5.47159 5.52782 5.60763 5.66249 5.71764 5.72882 5.76104 5.77650 5.84896 5.89597 5.94796 6.04625 6.07958 6.19208 6.23119 6.28094 6.39281 6.49161 6.58980 6.71719 6.88346 6.88946 7.07423 7.14209 7.24097 7.33993 7.50811 7.72817 7.88788 8.05436 8.49744 9.10616 9.67250 11.16410 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.039196 B = 0.002714 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.181550 B =10315.047798 C =10544.875593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.063 3.937 7 C -0.093 4.093 8 H 0.071 0.929 9 C -0.102 4.102 10 C 0.034 3.966 11 N -0.512 5.512 12 C 0.052 3.948 13 C -0.084 4.084 14 H 0.057 0.943 15 C -0.123 4.123 16 C 0.027 3.973 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.039 3.961 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.042 0.958 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.028 0.972 44 H 0.040 0.960 45 H 0.053 0.947 46 H 0.041 0.959 47 H 0.016 0.984 48 H 0.011 0.989 49 H 0.258 0.742 50 H 0.073 0.927 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -4.369 -24.352 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.065 4.065 7 C -0.113 4.113 8 H 0.090 0.910 9 C -0.140 4.140 10 C -0.094 4.094 11 N -0.236 5.236 12 C -0.076 4.076 13 C -0.103 4.103 14 H 0.075 0.925 15 C -0.180 4.180 16 C -0.011 4.011 17 C -0.548 4.548 18 H 0.075 0.925 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.090 4.090 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.034 0.966 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.091 0.909 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.596 -3.845 -24.294 25.466 hybrid contribution -0.249 -0.703 0.946 1.205 sum -6.845 -4.547 -23.348 24.752 Atomic orbital electron populations 1.22432 0.98526 1.02330 1.02073 1.22202 0.92691 0.90628 1.02770 1.62222 1.59461 1.02143 1.01838 1.22123 0.97503 0.98494 0.90189 1.21760 1.01127 1.00861 0.96637 1.22261 0.97071 0.98103 0.89054 1.22006 0.96450 0.99445 0.93370 0.91036 1.22399 0.94284 1.01525 0.95839 1.23246 0.94747 0.96896 0.94531 1.64812 1.01495 1.49794 1.07537 1.22492 1.00209 0.99097 0.85777 1.21271 0.94252 0.96325 0.98456 0.92509 1.21596 1.01229 0.96113 0.99102 1.19130 0.97173 0.96725 0.88054 1.21272 0.97486 1.44416 0.91657 0.92541 1.25028 0.96403 0.95579 0.97621 1.69980 1.30206 1.48247 1.05293 0.86581 0.84261 0.77976 0.79465 1.19741 1.21096 1.21135 1.22889 0.94899 0.96855 0.94336 0.92135 0.92553 0.92172 0.90796 0.90452 0.94508 0.91014 0.91862 0.92882 0.92628 0.94525 0.90396 0.91583 0.90843 0.93985 0.89918 0.91308 0.95343 0.94106 0.92774 0.94029 0.96592 0.97017 0.93193 0.90908 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.42 9.28 37.16 0.34 -1.08 16 2 C 0.05 0.36 5.71 -3.82 -0.02 0.34 16 3 N -0.53 -4.72 4.53 -234.64 -1.06 -5.78 16 4 C 0.04 0.35 5.56 -3.83 -0.02 0.32 16 5 C -0.15 -1.00 9.96 37.16 0.37 -0.63 16 6 C 0.06 0.60 3.81 -3.83 -0.01 0.58 16 7 C -0.09 -1.01 2.95 -89.26 -0.26 -1.28 16 8 H 0.07 0.76 6.31 -51.93 -0.33 0.44 16 9 C -0.10 -1.21 6.48 -24.87 -0.16 -1.37 16 10 C 0.03 0.49 5.09 -1.90 -0.01 0.48 16 11 N -0.51 -7.90 4.85 -230.45 -1.12 -9.02 16 12 C 0.05 0.94 4.42 -3.82 -0.02 0.92 16 13 C -0.08 -1.76 2.02 -90.62 -0.18 -1.95 16 14 H 0.06 1.20 6.52 -51.93 -0.34 0.86 16 15 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 16 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 17 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 18 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 21 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 C 0.04 0.50 6.36 -2.75 -0.02 0.48 16 26 H 0.06 0.48 6.23 -51.93 -0.32 0.16 16 27 H 0.06 0.40 6.30 -51.93 -0.33 0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.55 6.57 -51.93 -0.34 0.21 16 30 H 0.08 0.66 6.32 -51.93 -0.33 0.33 16 31 H 0.04 0.27 5.92 -51.93 -0.31 -0.03 16 32 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.36 6.69 -51.93 -0.35 0.01 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.04 0.34 6.00 -51.93 -0.31 0.03 16 37 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.89 7.76 -51.92 -0.40 0.49 16 40 H 0.04 0.64 8.01 -51.93 -0.42 0.23 16 41 H 0.08 1.26 7.56 -51.93 -0.39 0.87 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.53 7.81 -51.93 -0.41 0.12 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 46 H 0.04 0.75 7.75 -51.92 -0.40 0.34 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 51 H 0.04 0.54 7.57 -51.93 -0.39 0.15 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -29.54 376.34 -10.79 -40.33 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -9.82 Total: -3.55 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -0.17 Total: -18.01 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: -1.44 Total: -41.36 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.54 -10.79 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602474292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.425 kcal (2) G-P(sol) polarization free energy of solvation -29.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds