Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47091 * 2 1 4 4 N 1.46890 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.46908 * 111.00174 * 293.95142 * 4 3 2 6 6 C 1.46905 * 111.00035 * 169.99721 * 4 3 2 7 7 C 1.52998 * 109.47031 * 287.88023 * 6 4 3 8 8 H 1.09001 * 110.27673 * 52.65692 * 7 6 4 9 9 C 1.54601 * 110.30693 * 290.57261 * 7 6 4 10 10 C 1.55109 * 102.84119 * 219.18387 * 9 7 6 11 11 N 1.48534 * 103.28322 * 37.30915 * 10 9 7 12 12 C 1.46900 * 110.99915 * 200.32995 * 11 10 9 13 13 C 1.53004 * 109.47331 * 287.39756 * 12 11 10 14 14 H 1.08996 * 109.47071 * 54.99689 * 13 12 11 15 15 C 1.53007 * 109.46561 * 295.00095 * 13 12 11 16 16 C 1.52994 * 109.47281 * 175.00217 * 13 12 11 17 17 C 1.50705 * 109.47092 * 184.99975 * 16 13 12 18 18 H 1.07999 * 119.99942 * 359.97438 * 17 16 13 19 19 C 1.37876 * 120.00167 * 179.97438 * 17 16 13 20 20 N 1.31517 * 119.99531 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00049 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47014 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47088 * 120.00048 * 21 19 17 24 24 H 1.48500 * 109.47028 * 239.99722 * 21 19 17 25 25 C 1.47899 * 105.81855 * 320.84359 * 11 10 9 26 26 H 1.09004 * 109.46843 * 59.99926 * 1 2 3 27 27 H 1.08993 * 109.47113 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46839 * 300.00160 * 1 2 3 29 29 H 1.08996 * 109.46794 * 239.99741 * 2 1 3 30 30 H 1.09001 * 109.47140 * 119.99668 * 2 1 3 31 31 H 1.08994 * 109.46998 * 59.99622 * 3 2 1 32 32 H 1.09001 * 109.46858 * 299.99841 * 3 2 1 33 33 H 1.08994 * 109.46916 * 65.87055 * 5 4 3 34 34 H 1.09001 * 109.46589 * 305.86630 * 5 4 3 35 35 H 1.08997 * 109.46975 * 185.86672 * 5 4 3 36 36 H 1.08993 * 109.46960 * 47.88194 * 6 4 3 37 37 H 1.08998 * 109.46971 * 167.88312 * 6 4 3 38 38 H 1.08991 * 110.72726 * 337.48192 * 9 7 6 39 39 H 1.08999 * 110.72682 * 100.77219 * 9 7 6 40 40 H 1.08999 * 110.59494 * 278.87358 * 10 9 7 41 41 H 1.09004 * 110.82762 * 155.85051 * 10 9 7 42 42 H 1.09002 * 109.47084 * 47.39468 * 12 11 10 43 43 H 1.08998 * 109.47409 * 167.39692 * 12 11 10 44 44 H 1.08997 * 109.46578 * 299.99514 * 15 13 12 45 45 H 1.08998 * 109.47283 * 59.99925 * 15 13 12 46 46 H 1.09001 * 109.46309 * 180.02562 * 15 13 12 47 47 H 1.09000 * 109.46949 * 304.99594 * 16 13 12 48 48 H 1.08993 * 109.47510 * 64.99792 * 16 13 12 49 49 H 0.97005 * 119.99599 * 180.02562 * 20 19 17 50 50 H 1.09001 * 109.91695 * 265.97794 * 25 11 10 51 51 H 1.09003 * 109.92020 * 144.68815 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0360 0.8855 1.2525 6 6 4.0354 2.7931 -0.2389 7 6 3.8041 3.1801 -1.7009 8 1 2.7559 3.0426 -1.9668 9 6 4.7080 2.3362 -2.6287 10 6 5.1530 3.3626 -3.7031 11 7 5.3333 4.6148 -2.9249 12 6 5.2839 5.7918 -3.8025 13 6 6.5667 5.8627 -4.6335 14 1 6.7033 4.9247 -5.1716 15 6 7.7617 6.0982 -3.7074 16 6 6.4627 7.0147 -5.6348 17 6 7.6715 7.0088 -6.5347 18 1 8.4375 6.2586 -6.4050 19 6 7.7995 7.9611 -7.5235 20 7 6.8664 8.8743 -7.6817 21 14 9.2983 7.9541 -8.6385 22 1 10.1941 6.8331 -8.2565 23 1 8.8653 7.7841 -10.0488 24 1 10.0271 9.2401 -8.4961 25 6 4.2294 4.6405 -1.9410 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7740 -0.1703 1.3192 34 1 3.6044 1.4213 2.0980 35 1 5.1206 0.9925 1.2698 36 1 3.5225 3.5027 0.4103 37 1 5.1037 2.8100 -0.0232 38 1 5.5694 1.9518 -2.0827 39 1 4.1425 1.5219 -3.0819 40 1 4.3774 3.4874 -4.4587 41 1 6.0924 3.0578 -4.1647 42 1 4.4240 5.7131 -4.4678 43 1 5.1932 6.6933 -3.1966 44 1 7.6250 7.0361 -3.1693 45 1 7.8358 5.2774 -2.9940 46 1 8.6755 6.1491 -4.2994 47 1 5.5616 6.8933 -6.2360 48 1 6.4153 7.9611 -5.0963 49 1 6.9563 9.5440 -8.3776 50 1 3.3902 5.2109 -2.3393 51 1 4.5742 5.0851 -1.0074 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488658.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -20.693481 kcal Electronic energy + Delta-G solvation = -22773.559370 eV Core-core repulsion = 19706.661013 eV Total energy + Delta-G solvation = -3066.898357 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.40344 -37.78557 -35.29753 -33.59036 -32.42797 -30.94305 -29.29147 -27.30921 -26.92251 -26.27492 -24.89744 -22.87893 -22.60007 -21.29060 -20.73100 -19.86289 -18.74673 -16.46575 -16.13412 -15.80066 -15.68309 -15.09122 -14.56014 -14.47737 -14.33386 -14.14200 -13.41818 -13.32008 -13.05074 -12.89127 -12.61856 -12.44757 -12.28736 -12.10172 -11.91925 -11.60206 -11.56081 -11.32492 -11.20832 -11.09755 -10.96924 -10.90763 -10.80036 -10.70561 -10.59990 -10.36854 -10.23142 -10.13286 -9.56926 -9.07159 -8.89350 -8.55527 -8.29431 -8.02451 -5.94175 -3.94774 3.34439 3.41879 3.46384 3.62691 4.33710 4.51997 4.55847 4.69218 4.71686 4.78628 4.84838 5.06461 5.10470 5.15934 5.23596 5.36615 5.37343 5.41702 5.45056 5.49900 5.53903 5.61036 5.67115 5.70343 5.72601 5.73539 5.86510 5.89981 5.93752 5.97643 6.06634 6.21074 6.21768 6.27110 6.35885 6.46805 6.60765 6.77483 6.83075 6.84018 7.08760 7.16498 7.26717 7.35112 7.50942 7.74547 7.90827 8.06801 8.51394 9.11957 9.68380 11.17486 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038615 B = 0.002563 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.926312 B =10923.414343 C =11089.974323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.052 3.948 4 N -0.541 5.541 5 C 0.024 3.976 6 C 0.066 3.934 7 C -0.093 4.093 8 H 0.070 0.930 9 C -0.101 4.101 10 C 0.032 3.968 11 N -0.512 5.512 12 C 0.052 3.948 13 C -0.077 4.077 14 H 0.054 0.946 15 C -0.122 4.122 16 C 0.026 3.974 17 C -0.509 4.509 18 H 0.057 0.943 19 C 0.053 3.947 20 N -0.898 5.898 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.039 3.961 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.081 0.919 42 H 0.029 0.971 43 H 0.066 0.934 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.015 0.985 49 H 0.258 0.742 50 H 0.040 0.960 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 -16.408 17.649 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.076 4.076 4 N -0.265 5.265 5 C -0.124 4.124 6 C -0.061 4.061 7 C -0.112 4.112 8 H 0.089 0.911 9 C -0.139 4.139 10 C -0.095 4.095 11 N -0.236 5.236 12 C -0.075 4.075 13 C -0.096 4.096 14 H 0.073 0.927 15 C -0.179 4.179 16 C -0.012 4.012 17 C -0.547 4.547 18 H 0.075 0.925 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.090 4.090 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.048 0.952 43 H 0.084 0.916 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.030 0.970 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.059 0.941 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.937 -16.527 17.427 25.992 hybrid contribution -0.376 0.788 -0.465 0.989 sum -10.312 -15.739 16.962 25.333 Atomic orbital electron populations 1.21747 0.95747 1.01718 1.01777 1.21527 0.95272 0.96476 1.02585 1.22231 0.87378 0.97155 1.00791 1.61951 1.07449 1.22566 1.34491 1.22412 1.00354 1.00071 0.89609 1.22224 1.00320 0.87977 0.95620 1.21994 0.99729 0.94689 0.94797 0.91131 1.22406 0.98910 0.96677 0.95887 1.23311 1.00655 0.90240 0.95338 1.64784 1.41654 1.02483 1.14639 1.22487 0.98699 0.91989 0.94360 1.21146 0.92292 1.00575 0.95619 0.92727 1.21576 0.98515 0.99544 0.98303 1.19140 0.96879 0.92353 0.92788 1.21280 1.05787 1.12889 1.14787 0.92518 1.25032 0.96302 0.95720 0.97628 1.69984 1.33653 1.16765 1.33374 0.86576 0.83227 0.77845 0.80608 1.19742 1.21143 1.21121 1.22862 0.93176 0.95479 0.97449 0.92595 0.92580 0.92984 0.91112 0.92160 0.95156 0.90624 0.91343 0.95898 0.91411 0.94967 0.90218 0.90854 0.91508 0.94145 0.90018 0.95225 0.91573 0.94352 0.93884 0.92851 0.97025 0.96658 0.93215 0.94124 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.86 5.86 -26.73 -0.16 -1.02 16 3 C 0.05 0.43 4.81 -3.83 -0.02 0.41 16 4 N -0.54 -4.88 4.58 -242.92 -1.11 -6.00 16 5 C 0.02 0.18 9.24 60.07 0.55 0.74 16 6 C 0.07 0.64 4.07 -3.82 -0.02 0.63 16 7 C -0.09 -1.01 3.03 -89.26 -0.27 -1.28 16 8 H 0.07 0.75 6.45 -51.93 -0.34 0.42 16 9 C -0.10 -1.18 6.49 -24.77 -0.16 -1.34 16 10 C 0.03 0.46 5.91 -1.80 -0.01 0.45 16 11 N -0.51 -7.88 4.70 -230.34 -1.08 -8.96 16 12 C 0.05 0.95 4.09 -3.82 -0.02 0.93 16 13 C -0.08 -1.64 2.37 -90.62 -0.21 -1.85 16 14 H 0.05 1.18 7.17 -51.93 -0.37 0.81 16 15 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 17 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 18 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 21 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 25 C 0.04 0.50 6.32 -2.76 -0.02 0.48 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.41 6.68 -51.93 -0.35 0.07 16 31 H 0.03 0.25 8.06 -51.93 -0.42 -0.17 16 32 H 0.08 0.65 6.34 -51.93 -0.33 0.32 16 33 H 0.07 0.48 6.76 -51.93 -0.35 0.12 16 34 H 0.02 0.17 8.06 -51.93 -0.42 -0.25 16 35 H 0.07 0.51 7.86 -51.93 -0.41 0.10 16 36 H 0.03 0.31 8.05 -51.93 -0.42 -0.11 16 37 H 0.08 0.81 7.66 -51.93 -0.40 0.42 16 38 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.60 7.81 -51.93 -0.41 0.19 16 41 H 0.08 1.22 7.67 -51.93 -0.40 0.82 16 42 H 0.03 0.55 7.83 -51.93 -0.41 0.14 16 43 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 46 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.04 0.53 7.77 -51.93 -0.40 0.12 16 51 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -29.79 385.66 -11.09 -40.88 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -10.28 Total: -4.77 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.14 Total: -17.32 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -1.46 Total: -41.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.79 -11.09 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488658.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.189 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds