Wall clock time and date at job start Tue Mar 31 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46968 * 2 1 4 4 N 1.46899 * 109.47223 * 179.97438 * 3 2 1 5 5 C 1.46891 * 111.00428 * 293.95771 * 4 3 2 6 6 C 1.46902 * 110.99824 * 170.00063 * 4 3 2 7 7 C 1.52996 * 109.47195 * 287.61548 * 6 4 3 8 8 H 1.09007 * 110.27291 * 52.23158 * 7 6 4 9 9 C 1.54591 * 110.31368 * 290.14182 * 7 6 4 10 10 C 1.55102 * 102.84656 * 219.18600 * 9 7 6 11 11 N 1.48538 * 103.28442 * 37.30575 * 10 9 7 12 12 C 1.46899 * 110.99952 * 200.33325 * 11 10 9 13 13 C 1.53004 * 109.47066 * 301.81212 * 12 11 10 14 14 H 1.09004 * 109.46856 * 54.34090 * 13 12 11 15 15 C 1.52997 * 109.46925 * 174.33748 * 13 12 11 16 16 C 1.53002 * 109.47053 * 294.33723 * 13 12 11 17 17 C 1.50701 * 109.46944 * 175.00141 * 16 13 12 18 18 H 1.07997 * 119.99986 * 0.02562 * 17 16 13 19 19 C 1.37873 * 119.99760 * 180.02562 * 17 16 13 20 20 N 1.31523 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47093 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47365 * 119.99701 * 21 19 17 24 24 H 1.48501 * 109.47166 * 239.99814 * 21 19 17 25 25 C 1.47898 * 105.81472 * 320.84568 * 11 10 9 26 26 H 1.08996 * 109.47194 * 299.99760 * 1 2 3 27 27 H 1.09001 * 109.46770 * 59.99948 * 1 2 3 28 28 H 1.09003 * 109.46484 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47469 * 240.00819 * 2 1 3 30 30 H 1.08992 * 109.47356 * 120.00045 * 2 1 3 31 31 H 1.09006 * 109.46872 * 60.00086 * 3 2 1 32 32 H 1.08997 * 109.47577 * 300.00139 * 3 2 1 33 33 H 1.09000 * 109.47295 * 57.13200 * 5 4 3 34 34 H 1.09004 * 109.47032 * 297.13591 * 5 4 3 35 35 H 1.08997 * 109.47410 * 177.13430 * 5 4 3 36 36 H 1.08997 * 109.47292 * 47.61887 * 6 4 3 37 37 H 1.08997 * 109.46807 * 167.61950 * 6 4 3 38 38 H 1.09004 * 110.72357 * 337.48235 * 9 7 6 39 39 H 1.08999 * 110.72662 * 100.76416 * 9 7 6 40 40 H 1.08994 * 110.59717 * 278.86847 * 10 9 7 41 41 H 1.09002 * 110.83109 * 155.84746 * 10 9 7 42 42 H 1.09004 * 109.47258 * 61.80859 * 12 11 10 43 43 H 1.08993 * 109.47019 * 181.81053 * 12 11 10 44 44 H 1.08997 * 109.47107 * 65.29952 * 15 13 12 45 45 H 1.09004 * 109.47137 * 185.29719 * 15 13 12 46 46 H 1.08999 * 109.47550 * 305.29597 * 15 13 12 47 47 H 1.08995 * 109.46941 * 295.00492 * 16 13 12 48 48 H 1.09006 * 109.46830 * 55.00344 * 16 13 12 49 49 H 0.96996 * 119.99524 * 180.02562 * 20 19 17 50 50 H 1.09004 * 109.91614 * 265.97543 * 25 11 10 51 51 H 1.09010 * 109.91299 * 144.68930 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0350 0.8860 1.2541 6 6 4.0354 2.7932 -0.2375 7 6 3.8113 3.1772 -1.7014 8 1 2.7661 3.0312 -1.9744 9 6 4.7283 2.3401 -2.6223 10 6 5.1726 3.3692 -3.6943 11 7 5.3374 4.6234 -2.9158 12 6 5.2846 5.7994 -3.7946 13 6 6.3796 5.6911 -4.8578 14 1 6.2839 4.7404 -5.3824 15 6 6.2362 6.8413 -5.8565 16 6 7.7521 5.7671 -4.1859 17 6 8.8286 5.5378 -5.2152 18 1 8.5607 5.3565 -6.2456 19 6 10.1555 5.5596 -4.8415 20 7 10.4818 5.7809 -3.5867 21 14 11.4900 5.2762 -6.1174 22 1 10.8652 5.0523 -7.4458 23 1 12.3754 6.4667 -6.1807 24 1 12.2904 4.0836 -5.7401 25 6 4.2264 4.6409 -1.9397 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9564 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.6446 -0.1217 1.3963 34 1 3.7273 1.5159 2.0887 35 1 5.1234 0.8507 1.2075 36 1 3.5187 3.5036 0.4077 37 1 5.1026 2.8113 -0.0165 38 1 5.5890 1.9630 -2.0700 39 1 4.1725 1.5210 -3.0787 40 1 4.4013 3.4873 -4.4554 41 1 6.1175 3.0718 -4.1491 42 1 4.3099 5.8464 -4.2805 43 1 5.4399 6.7019 -3.2036 44 1 6.4250 7.7878 -5.3500 45 1 6.9556 6.7121 -6.6651 46 1 5.2260 6.8433 -6.2658 47 1 7.8826 6.7515 -3.7366 48 1 7.8205 5.0025 -3.4120 49 1 11.4153 5.7966 -3.3239 50 1 3.3855 5.2043 -2.3442 51 1 4.5612 5.0889 -1.0040 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:54 Heat of formation + Delta-G solvation = -17.545929 kcal Electronic energy + Delta-G solvation = -23075.222813 eV Core-core repulsion = 20008.460943 eV Total energy + Delta-G solvation = -3066.761869 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.30856 -37.72563 -35.25271 -33.49209 -32.32256 -30.90725 -29.17625 -27.20639 -26.93383 -26.36561 -24.55413 -22.79381 -22.58445 -21.23921 -20.77143 -19.74015 -18.56360 -16.40697 -16.04360 -15.76605 -15.58456 -15.09620 -14.54254 -14.40329 -14.26140 -13.88775 -13.36726 -13.24676 -12.96871 -12.80053 -12.55731 -12.29831 -12.20329 -12.00627 -11.87447 -11.66984 -11.44190 -11.30982 -11.10530 -11.01724 -10.89722 -10.82407 -10.80197 -10.72041 -10.53119 -10.25758 -10.22828 -10.04823 -9.57643 -9.01676 -8.78350 -8.44088 -8.21099 -7.82374 -5.85477 -3.85954 3.37789 3.45298 3.48904 3.73476 4.46278 4.56486 4.63849 4.76681 4.81541 4.89363 4.98364 5.13845 5.19965 5.23484 5.35018 5.44556 5.47054 5.49870 5.53291 5.60359 5.64504 5.71538 5.74626 5.77305 5.79573 5.83693 5.90252 5.94269 6.00239 6.05829 6.12814 6.16576 6.32066 6.33872 6.40885 6.48170 6.56146 6.57821 6.94258 6.95550 7.02104 7.09559 7.33871 7.41866 7.62856 7.89206 8.10105 8.23775 8.60503 9.22275 9.76210 11.25654 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.003131 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.374492 B = 8941.783011 C = 9492.314633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.052 3.948 4 N -0.541 5.541 5 C 0.023 3.977 6 C 0.066 3.934 7 C -0.091 4.091 8 H 0.068 0.932 9 C -0.102 4.102 10 C 0.034 3.966 11 N -0.502 5.502 12 C 0.056 3.944 13 C -0.087 4.087 14 H 0.056 0.944 15 C -0.132 4.132 16 C 0.035 3.965 17 C -0.512 4.512 18 H 0.052 0.948 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.884 3.116 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C 0.039 3.961 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.022 0.978 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.089 0.911 42 H 0.017 0.983 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.027 0.973 47 H 0.009 0.991 48 H 0.032 0.968 49 H 0.257 0.743 50 H 0.037 0.963 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 -8.750 7.848 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.075 4.075 4 N -0.264 5.264 5 C -0.125 4.125 6 C -0.062 4.062 7 C -0.111 4.111 8 H 0.087 0.913 9 C -0.140 4.140 10 C -0.093 4.093 11 N -0.225 5.225 12 C -0.071 4.071 13 C -0.105 4.105 14 H 0.075 0.925 15 C -0.189 4.189 16 C -0.002 4.002 17 C -0.550 4.550 18 H 0.070 0.930 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.713 3.287 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.212 1.212 25 C -0.089 4.089 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.040 0.960 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.035 0.965 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.046 0.954 47 H 0.028 0.972 48 H 0.050 0.950 49 H 0.067 0.933 50 H 0.055 0.945 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.319 -8.997 7.844 21.865 hybrid contribution -0.230 0.515 -0.373 0.676 sum -18.549 -8.482 7.472 21.722 Atomic orbital electron populations 1.21743 0.95817 1.01663 1.01711 1.21544 0.95188 0.96569 1.02640 1.22210 0.87613 0.97051 1.00671 1.61940 1.07276 1.22709 1.34513 1.22419 1.00899 0.99614 0.89616 1.22229 1.00605 0.87784 0.95583 1.21978 0.99482 0.94703 0.94899 0.91317 1.22414 0.98887 0.96625 0.96044 1.23291 1.00812 0.90089 0.95131 1.64745 1.40986 1.02108 1.14705 1.22425 0.96996 0.93086 0.94639 1.21272 0.97250 0.97600 0.94408 0.92542 1.21696 0.98841 0.98718 0.99687 1.19062 0.88120 0.97434 0.95593 1.21352 0.91186 1.47591 0.94897 0.92981 1.24996 0.98678 0.95828 0.94989 1.69995 1.17130 1.50485 1.15817 0.86662 0.82352 0.77654 0.82050 1.19921 1.21244 1.21178 1.22891 0.92779 0.95478 0.97794 0.92998 0.92665 0.92613 0.91091 0.92092 0.95259 0.90703 0.91349 0.95976 0.91184 0.95013 0.89976 0.90598 0.91627 0.94754 0.89285 0.96528 0.91398 0.93504 0.92053 0.95411 0.97216 0.94958 0.93348 0.94515 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.96 5.86 -26.73 -0.16 -1.12 16 3 C 0.05 0.48 4.81 -3.82 -0.02 0.46 16 4 N -0.54 -5.65 4.59 -242.92 -1.11 -6.77 16 5 C 0.02 0.21 9.32 60.06 0.56 0.77 16 6 C 0.07 0.75 4.07 -3.82 -0.02 0.73 16 7 C -0.09 -1.12 3.04 -89.27 -0.27 -1.39 16 8 H 0.07 0.79 6.46 -51.93 -0.34 0.45 16 9 C -0.10 -1.39 6.50 -24.78 -0.16 -1.55 16 10 C 0.03 0.56 5.34 -1.81 -0.01 0.55 16 11 N -0.50 -8.75 4.76 -230.34 -1.10 -9.85 16 12 C 0.06 1.02 4.23 -3.82 -0.02 1.01 16 13 C -0.09 -1.81 2.16 -90.62 -0.20 -2.01 16 14 H 0.06 1.20 6.60 -51.93 -0.34 0.85 16 15 C -0.13 -2.54 8.91 37.16 0.33 -2.21 16 16 C 0.03 0.92 4.40 -27.88 -0.12 0.79 16 17 C -0.51 -14.59 8.47 -34.44 -0.29 -14.88 16 18 H 0.05 1.45 7.06 -52.49 -0.37 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 21 Si 0.88 22.10 29.54 -169.99 -5.02 17.08 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.04 0.56 6.36 -2.76 -0.02 0.54 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.47 6.49 -51.93 -0.34 0.13 16 31 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 32 H 0.07 0.70 6.35 -51.93 -0.33 0.37 16 33 H 0.07 0.56 6.34 -51.93 -0.33 0.23 16 34 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.03 0.35 8.05 -51.93 -0.42 -0.07 16 37 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16 38 H 0.08 1.12 7.75 -51.93 -0.40 0.72 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.53 8.02 -51.93 -0.42 0.11 16 41 H 0.09 1.63 7.52 -51.93 -0.39 1.23 16 42 H 0.02 0.27 7.97 -51.93 -0.41 -0.14 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.25 7.11 -51.93 -0.37 0.88 16 46 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.03 0.92 7.64 -51.93 -0.40 0.52 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.04 0.49 7.66 -51.93 -0.40 0.09 16 51 H 0.07 1.04 7.68 -51.92 -0.40 0.64 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -30.28 384.73 -11.07 -41.34 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -10.26 Total: -3.42 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -0.11 Total: -17.43 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -1.47 Total: -43.37 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.28 -11.07 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.796 kcal (2) G-P(sol) polarization free energy of solvation -30.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds