Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46894 * 109.47515 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00086 * 293.95813 * 4 3 2 6 6 C 1.46900 * 111.00167 * 169.99883 * 4 3 2 7 7 C 1.53008 * 109.47001 * 190.00016 * 6 4 3 8 8 H 1.08997 * 110.28748 * 305.70529 * 7 6 4 9 9 C 1.54263 * 110.32237 * 67.83068 * 7 6 4 10 10 C 1.54380 * 105.06108 * 118.89529 * 9 7 6 11 11 N 1.48565 * 104.59382 * 23.85048 * 10 9 7 12 12 C 1.46896 * 110.99732 * 200.96008 * 11 10 9 13 13 C 1.53004 * 109.47418 * 290.12606 * 12 11 10 14 14 H 1.09002 * 109.46555 * 55.00324 * 13 12 11 15 15 C 1.52999 * 109.47066 * 295.00289 * 13 12 11 16 16 C 1.52995 * 109.47103 * 175.00245 * 13 12 11 17 17 C 1.50706 * 109.46897 * 184.99952 * 16 13 12 18 18 H 1.07994 * 120.00162 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99908 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99947 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00252 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47056 * 89.99495 * 21 19 17 23 23 H 1.48499 * 109.47347 * 209.99784 * 21 19 17 24 24 H 1.48503 * 109.46928 * 329.99571 * 21 19 17 25 25 C 1.48724 * 104.28800 * 320.57598 * 11 10 9 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 33 33 H 1.08994 * 109.47768 * 59.99563 * 5 4 3 34 34 H 1.09001 * 109.47114 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46895 * 299.99681 * 5 4 3 36 36 H 1.09000 * 109.47344 * 309.99988 * 6 4 3 37 37 H 1.08997 * 109.47244 * 70.00491 * 6 4 3 38 38 H 1.09002 * 110.32352 * 237.78992 * 9 7 6 39 39 H 1.08996 * 110.32507 * 359.97438 * 9 7 6 40 40 H 1.08997 * 110.41161 * 142.63399 * 10 9 7 41 41 H 1.08999 * 110.41113 * 264.95510 * 10 9 7 42 42 H 1.08993 * 109.47592 * 50.12881 * 12 11 10 43 43 H 1.09005 * 109.46694 * 170.12783 * 12 11 10 44 44 H 1.08996 * 109.47283 * 299.99884 * 15 13 12 45 45 H 1.09007 * 109.46986 * 59.99889 * 15 13 12 46 46 H 1.09002 * 109.47349 * 179.97438 * 15 13 12 47 47 H 1.08996 * 109.47579 * 305.00016 * 16 13 12 48 48 H 1.09001 * 109.47107 * 65.00633 * 16 13 12 49 49 H 0.97008 * 119.99902 * 180.02562 * 20 19 17 50 50 H 1.09000 * 110.38693 * 280.63977 * 25 11 10 51 51 H 1.08996 * 110.50971 * 158.14873 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0359 0.8856 1.2523 6 6 4.0352 2.7932 -0.2388 7 6 5.5442 2.7174 -0.4804 8 1 6.0331 2.1973 0.3433 9 6 5.8377 2.0020 -1.8153 10 6 6.5787 3.0476 -2.6762 11 7 7.1775 3.9860 -1.6924 12 6 7.4846 5.2792 -2.3179 13 6 8.6526 5.1103 -3.2916 14 1 8.4162 4.3253 -4.0099 15 6 9.9134 4.7272 -2.5140 16 6 8.8917 6.4262 -4.0345 17 6 9.9592 6.2265 -5.0793 18 1 10.4207 5.2578 -5.2015 19 6 10.3460 7.2802 -5.8798 20 7 11.2780 7.1061 -6.7913 21 14 9.5474 8.9558 -5.6690 22 1 10.3172 9.7498 -4.6779 23 1 9.5372 9.6669 -6.9726 24 1 8.1529 8.7825 -5.1888 25 6 6.1329 4.1350 -0.6444 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.6866 -0.1402 1.3693 34 1 5.1255 0.8979 1.2254 35 1 3.6868 1.4863 2.0922 36 1 3.5483 3.2238 -1.1138 37 1 3.8377 3.4189 0.6316 38 1 6.4723 1.1319 -1.6470 39 1 4.9069 1.7046 -2.2981 40 1 7.3585 2.5687 -3.2683 41 1 5.8772 3.5713 -3.3255 42 1 6.6093 5.6379 -2.8593 43 1 7.7556 6.0004 -1.5469 44 1 10.1498 5.5122 -1.7957 45 1 9.7431 3.7896 -1.9847 46 1 10.7455 4.6065 -3.2077 47 1 7.9672 6.7449 -4.5159 48 1 9.2145 7.1896 -3.3266 49 1 11.5504 7.8476 -7.3543 50 1 5.3615 4.8312 -0.9735 51 1 6.5767 4.4730 0.2920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -16.246290 kcal Electronic energy + Delta-G solvation = -22741.536702 eV Core-core repulsion = 19674.831189 eV Total energy + Delta-G solvation = -3066.705513 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47751 -37.85009 -35.47598 -33.72167 -32.34687 -30.95081 -29.25756 -27.59137 -27.44833 -26.40514 -24.97446 -22.83530 -22.51360 -21.13392 -20.71906 -19.93244 -18.57301 -16.73908 -16.45092 -16.07549 -15.59510 -15.42226 -14.72044 -14.53469 -14.07697 -14.02470 -13.76517 -13.30961 -13.16593 -12.85512 -12.55468 -12.49680 -12.34898 -12.16953 -12.02483 -11.82826 -11.73123 -11.53939 -11.37616 -11.19160 -10.99048 -10.92628 -10.82031 -10.72997 -10.59240 -10.38836 -10.35678 -9.70224 -9.66491 -9.33743 -9.01160 -8.61033 -8.48197 -8.17665 -5.98453 -3.94912 3.33614 3.40771 3.44530 3.55363 4.23606 4.49812 4.53233 4.65436 4.69802 4.78116 4.81458 4.99318 5.07414 5.11918 5.18763 5.25910 5.34970 5.37001 5.39111 5.41321 5.45109 5.49821 5.61473 5.63316 5.69963 5.72077 5.79124 5.81687 5.83959 5.92988 6.01160 6.09376 6.20423 6.23937 6.27616 6.37277 6.46404 6.65869 6.76516 6.78850 6.89859 7.05556 7.12853 7.23447 7.32704 7.41453 7.54225 7.86971 8.61835 9.07767 9.64616 11.15005 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.002635 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.436407 B =10624.506878 C =10847.181036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.054 3.946 4 N -0.540 5.540 5 C 0.019 3.981 6 C 0.063 3.937 7 C -0.087 4.087 8 H 0.078 0.922 9 C -0.106 4.106 10 C 0.030 3.970 11 N -0.505 5.505 12 C 0.048 3.952 13 C -0.070 4.070 14 H 0.061 0.939 15 C -0.124 4.124 16 C -0.010 4.010 17 C -0.510 4.510 18 H 0.074 0.926 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.036 3.964 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.029 0.971 43 H 0.067 0.933 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.058 0.942 47 H 0.011 0.989 48 H 0.010 0.990 49 H 0.261 0.739 50 H 0.040 0.960 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.657 -12.453 16.674 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.074 4.074 4 N -0.263 5.263 5 C -0.129 4.129 6 C -0.065 4.065 7 C -0.107 4.107 8 H 0.096 0.904 9 C -0.144 4.144 10 C -0.098 4.098 11 N -0.228 5.228 12 C -0.080 4.080 13 C -0.089 4.089 14 H 0.079 0.921 15 C -0.181 4.181 16 C -0.048 4.048 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.192 1.192 25 C -0.093 4.093 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.092 0.908 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.029 0.971 48 H 0.029 0.971 49 H 0.071 0.929 50 H 0.058 0.942 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.889 -12.842 16.365 28.098 hybrid contribution -1.356 1.974 0.319 2.416 sum -20.245 -10.868 16.684 28.396 Atomic orbital electron populations 1.21743 0.95711 1.01769 1.01746 1.21536 0.95278 0.96387 1.02711 1.22174 0.87245 0.97269 1.00673 1.61950 1.07221 1.22293 1.34861 1.22477 1.01132 0.99812 0.89446 1.22219 0.95340 0.88673 1.00293 1.21903 0.93687 0.95957 0.99110 0.90352 1.22225 1.00036 0.97724 0.94408 1.23157 0.97543 0.94335 0.94734 1.65420 1.36121 1.11093 1.10215 1.22497 0.98320 0.89814 0.97369 1.20973 0.93159 0.99592 0.95168 0.92079 1.21591 0.97839 0.99545 0.99168 1.19627 0.96862 0.92833 0.95450 1.21134 1.19474 0.98355 1.15857 0.90819 1.25036 0.94836 0.98780 0.95033 1.69919 1.30556 1.31997 1.22029 0.86803 0.80574 0.84719 0.77312 1.20390 1.21526 1.19175 1.23124 0.93504 0.95730 0.96934 0.92531 0.92977 0.92621 0.92035 0.91047 0.90896 0.95127 0.91315 0.90902 0.95906 0.90812 0.94947 0.91491 0.90941 0.89985 0.94148 0.95274 0.91435 0.94340 0.93655 0.92283 0.97053 0.97131 0.92880 0.94220 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.81 5.86 -26.73 -0.16 -0.97 16 3 C 0.05 0.41 4.96 -3.83 -0.02 0.39 16 4 N -0.54 -4.70 4.55 -242.92 -1.11 -5.81 16 5 C 0.02 0.15 9.14 60.06 0.55 0.70 16 6 C 0.06 0.58 4.02 -3.82 -0.02 0.56 16 7 C -0.09 -0.91 3.00 -89.23 -0.27 -1.18 16 8 H 0.08 0.81 6.29 -51.93 -0.33 0.49 16 9 C -0.11 -1.21 6.49 -25.35 -0.16 -1.37 16 10 C 0.03 0.42 5.74 -2.18 -0.01 0.41 16 11 N -0.50 -7.50 4.82 -229.83 -1.11 -8.60 16 12 C 0.05 0.82 4.20 -3.82 -0.02 0.80 16 13 C -0.07 -1.42 2.34 -90.62 -0.21 -1.64 16 14 H 0.06 1.29 7.05 -51.93 -0.37 0.92 16 15 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 16 C -0.01 -0.24 3.52 -27.88 -0.10 -0.34 16 17 C -0.51 -14.64 8.96 -34.44 -0.31 -14.95 16 18 H 0.07 2.27 7.30 -52.49 -0.38 1.89 16 19 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 21 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 25 C 0.04 0.43 6.05 -2.09 -0.01 0.42 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 6.55 -51.93 -0.34 0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 32 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 33 H 0.07 0.48 6.47 -51.93 -0.34 0.14 16 34 H 0.07 0.58 6.21 -51.93 -0.32 0.26 16 35 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.07 0.71 7.93 -51.93 -0.41 0.29 16 37 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 40 H 0.08 1.21 7.64 -51.93 -0.40 0.82 16 41 H 0.04 0.57 7.83 -51.93 -0.41 0.17 16 42 H 0.03 0.50 7.88 -51.93 -0.41 0.09 16 43 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.82 7.75 -51.92 -0.40 0.41 16 46 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 47 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 48 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 49 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.04 0.48 7.72 -51.93 -0.40 0.07 16 51 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -30.21 381.86 -10.74 -40.95 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -10.26 Total: -4.25 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.13 Total: -17.99 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -1.44 Total: -41.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.21 -10.74 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.703 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds