Wall clock time and date at job start Tue Mar 31 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46901 * 110.99975 * 293.94862 * 4 3 2 6 6 C 1.46903 * 110.99790 * 169.99915 * 4 3 2 7 7 C 1.52998 * 109.47073 * 189.99823 * 6 4 3 8 8 H 1.08999 * 110.63045 * 305.69844 * 7 6 4 9 9 C 1.55141 * 110.70796 * 68.80522 * 7 6 4 10 10 C 1.55114 * 101.56232 * 153.90641 * 9 7 6 11 11 N 1.47845 * 104.90142 * 323.16077 * 10 9 7 12 12 C 1.46904 * 110.99803 * 146.24248 * 11 10 9 13 13 C 1.52998 * 109.47117 * 69.15237 * 12 11 10 14 14 H 1.08997 * 109.47374 * 305.00074 * 13 12 11 15 15 C 1.52997 * 109.47298 * 65.00459 * 13 12 11 16 16 C 1.53001 * 109.46787 * 184.99957 * 13 12 11 17 17 C 1.50698 * 109.47070 * 175.00056 * 16 13 12 18 18 H 1.07999 * 120.00202 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00134 * 179.97438 * 17 16 13 20 20 N 1.31511 * 119.99964 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46885 * 90.00350 * 21 19 17 23 23 H 1.48506 * 109.47100 * 209.99960 * 21 19 17 24 24 H 1.48498 * 109.47678 * 330.00254 * 21 19 17 25 25 C 1.47436 * 108.56949 * 23.96912 * 11 10 9 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 32 32 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 33 33 H 1.08999 * 109.46894 * 60.00348 * 5 4 3 34 34 H 1.09005 * 109.47342 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47121 * 300.00361 * 5 4 3 36 36 H 1.09005 * 109.47192 * 309.99470 * 6 4 3 37 37 H 1.08993 * 109.47271 * 69.99789 * 6 4 3 38 38 H 1.09005 * 110.99287 * 272.13016 * 9 7 6 39 39 H 1.08996 * 110.98877 * 35.94411 * 9 7 6 40 40 H 1.08996 * 110.42795 * 204.23954 * 10 9 7 41 41 H 1.08998 * 110.30861 * 82.01602 * 10 9 7 42 42 H 1.08996 * 109.47184 * 189.15540 * 12 11 10 43 43 H 1.09001 * 109.46917 * 309.15053 * 12 11 10 44 44 H 1.09000 * 109.47711 * 59.99437 * 15 13 12 45 45 H 1.09000 * 109.47683 * 179.97438 * 15 13 12 46 46 H 1.09005 * 109.46926 * 299.99806 * 15 13 12 47 47 H 1.09000 * 109.47369 * 295.00104 * 16 13 12 48 48 H 1.09003 * 109.47444 * 55.00303 * 16 13 12 49 49 H 0.97007 * 120.00316 * 180.02562 * 20 19 17 50 50 H 1.09003 * 109.89158 * 239.60053 * 25 11 10 51 51 H 1.09002 * 109.88556 * 118.41715 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0359 0.8855 1.2524 6 6 4.0353 2.7931 -0.2388 7 6 5.5442 2.7171 -0.4804 8 1 6.0389 2.1979 0.3405 9 6 5.8489 2.0207 -1.8328 10 6 7.2278 2.6325 -2.1938 11 7 7.1526 4.0363 -1.7359 12 6 8.4608 4.5055 -1.2600 13 6 9.4197 4.6314 -2.4456 14 1 9.4661 3.6813 -2.9778 15 6 8.9185 5.7229 -3.3933 16 6 10.8147 4.9993 -1.9362 17 6 11.7855 5.0031 -3.0889 18 1 11.4418 4.7671 -4.0852 19 6 13.1123 5.3089 -2.8718 20 7 13.5308 5.5968 -1.6588 21 14 14.3157 5.3128 -4.3006 22 1 14.3598 6.6677 -4.9068 23 1 15.6683 4.9459 -3.8095 24 1 13.8757 4.3280 -5.3212 25 6 6.1382 4.1287 -0.6700 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.6864 -0.1403 1.3694 34 1 5.1256 0.8977 1.2256 35 1 3.6867 1.4863 2.0922 36 1 3.5485 3.2237 -1.1139 37 1 3.8378 3.4187 0.6315 38 1 5.9185 0.9400 -1.7086 39 1 5.1005 2.2787 -2.5821 40 1 7.3915 2.5928 -3.2707 41 1 8.0247 2.1047 -1.6699 42 1 8.3457 5.4778 -0.7810 43 1 8.8633 3.7918 -0.5412 44 1 8.8721 6.6730 -2.8611 45 1 9.6019 5.8129 -4.2377 46 1 7.9246 5.4608 -3.7561 47 1 10.7862 5.9898 -1.4821 48 1 11.1351 4.2683 -1.1939 49 1 14.4642 5.8123 -1.5061 50 1 5.3530 4.8250 -0.9647 51 1 6.6040 4.4626 0.2572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602488665.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:58 Heat of formation + Delta-G solvation = -20.465845 kcal Electronic energy + Delta-G solvation = -22675.001268 eV Core-core repulsion = 19608.112781 eV Total energy + Delta-G solvation = -3066.888486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.42441 -37.82855 -35.32350 -33.69345 -32.34986 -30.76806 -29.29505 -27.50286 -26.93398 -26.26282 -24.97697 -22.94716 -22.58841 -21.14076 -20.63769 -19.97945 -18.76369 -16.50510 -16.18288 -15.97045 -15.53973 -15.13509 -14.60442 -14.48173 -14.38272 -14.08154 -13.40201 -13.27152 -13.05939 -12.96354 -12.66592 -12.45266 -12.16418 -12.10036 -11.97497 -11.69486 -11.55364 -11.41735 -11.29581 -11.03551 -10.97944 -10.82481 -10.77868 -10.72404 -10.64726 -10.42648 -10.23253 -10.13262 -9.57775 -9.06864 -8.89777 -8.57358 -8.29049 -7.92094 -5.93927 -3.94621 3.35597 3.41621 3.45276 3.59576 4.32196 4.51984 4.52995 4.63920 4.69168 4.75269 4.93893 4.99091 5.08103 5.13813 5.20842 5.30429 5.40352 5.41786 5.43402 5.45736 5.52415 5.56437 5.63950 5.68252 5.73320 5.75333 5.83619 5.87271 5.94643 5.96002 6.09485 6.15233 6.22877 6.28778 6.38313 6.46845 6.62035 6.77803 6.79608 6.82067 7.09797 7.19382 7.26895 7.40129 7.53686 7.74386 7.90889 8.06840 8.51515 9.11819 9.68420 11.17633 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044803 B = 0.002447 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.814369 B =11441.220157 C =11481.402824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.019 3.981 6 C 0.068 3.932 7 C -0.107 4.107 8 H 0.074 0.926 9 C -0.107 4.107 10 C 0.041 3.959 11 N -0.525 5.525 12 C 0.057 3.943 13 C -0.079 4.079 14 H 0.054 0.946 15 C -0.122 4.122 16 C 0.027 3.973 17 C -0.510 4.510 18 H 0.056 0.944 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 C 0.047 3.953 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.028 0.972 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.011 0.989 49 H 0.259 0.741 50 H 0.072 0.928 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.315 -9.261 5.112 26.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.073 4.073 4 N -0.264 5.264 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.126 4.126 8 H 0.092 0.908 9 C -0.145 4.145 10 C -0.087 4.087 11 N -0.249 5.249 12 C -0.071 4.071 13 C -0.098 4.098 14 H 0.073 0.927 15 C -0.179 4.179 16 C -0.011 4.011 17 C -0.548 4.548 18 H 0.074 0.926 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 C -0.081 4.081 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.129 -9.177 4.414 26.190 hybrid contribution 0.842 0.104 0.777 1.150 sum -23.287 -9.073 5.191 25.526 Atomic orbital electron populations 1.21740 0.95718 1.01743 1.01738 1.21538 0.95266 0.96447 1.02687 1.22169 0.87265 0.97213 1.00675 1.61973 1.07215 1.22431 1.34743 1.22478 1.01039 0.99836 0.89543 1.22104 0.94923 0.88568 1.00397 1.22422 0.94622 0.96807 0.98787 0.90817 1.22632 0.96658 0.99486 0.95743 1.23108 0.96416 0.87990 1.01163 1.63603 1.07245 1.20105 1.33922 1.22519 0.88008 0.99051 0.97505 1.21170 0.95657 0.98592 0.94390 0.92715 1.21572 0.99192 0.97734 0.99418 1.19132 0.89181 0.96519 0.96257 1.21242 0.93073 1.46029 0.94496 0.92575 1.25030 0.98489 0.95657 0.95490 1.69969 1.15827 1.47852 1.20109 0.86629 0.80542 0.78285 0.82753 1.20743 1.21359 1.19915 1.22811 0.95510 0.95869 0.93940 0.92564 0.92973 0.92626 0.91075 0.92068 0.90843 0.95139 0.91321 0.91070 0.95874 0.90457 0.94975 0.91032 0.91038 0.90406 0.93705 0.91586 0.95383 0.94328 0.92867 0.93903 0.96664 0.97045 0.93161 0.90994 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.83 5.86 -26.73 -0.16 -0.99 16 3 C 0.05 0.42 4.96 -3.82 -0.02 0.40 16 4 N -0.54 -4.86 4.63 -242.92 -1.12 -5.99 16 5 C 0.02 0.16 9.14 60.07 0.55 0.71 16 6 C 0.07 0.64 4.25 -3.82 -0.02 0.63 16 7 C -0.11 -1.16 2.86 -88.80 -0.25 -1.42 16 8 H 0.07 0.83 6.32 -51.93 -0.33 0.50 16 9 C -0.11 -1.25 6.42 -24.48 -0.16 -1.40 16 10 C 0.04 0.59 5.72 -2.19 -0.01 0.57 16 11 N -0.52 -8.11 4.62 -231.12 -1.07 -9.18 16 12 C 0.06 1.03 3.95 -3.82 -0.02 1.01 16 13 C -0.08 -1.68 2.33 -90.62 -0.21 -1.89 16 14 H 0.05 1.18 7.34 -51.93 -0.38 0.80 16 15 C -0.12 -2.46 8.89 37.16 0.33 -2.12 16 16 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 17 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 18 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 21 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.05 0.60 6.46 -2.84 -0.02 0.59 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.42 6.55 -51.93 -0.34 0.08 16 31 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 32 H 0.03 0.23 8.12 -51.93 -0.42 -0.19 16 33 H 0.07 0.51 6.47 -51.93 -0.34 0.18 16 34 H 0.07 0.62 6.22 -51.93 -0.32 0.30 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 37 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.83 7.98 -51.93 -0.41 0.42 16 40 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 41 H 0.04 0.68 7.62 -51.93 -0.40 0.29 16 42 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16 43 H 0.03 0.52 7.85 -51.93 -0.41 0.11 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 46 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 47 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.07 0.87 7.82 -51.93 -0.41 0.47 16 51 H 0.05 0.65 7.55 -51.93 -0.39 0.26 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -29.81 385.69 -11.09 -40.90 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -10.30 Total: -4.72 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.12 Total: -17.20 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -1.46 Total: -41.78 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.81 -11.09 -40.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602488665.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.431 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds