Wall clock time and date at job start Tue Mar 31 2020 05:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47463 * 2 1 4 4 C 1.53001 * 109.47398 * 239.99642 * 2 1 3 5 5 C 1.50699 * 109.46898 * 64.99626 * 4 2 1 6 6 H 1.08000 * 120.00046 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00004 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99984 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46540 * 90.00179 * 9 7 5 11 11 H 1.48493 * 109.47170 * 209.99635 * 9 7 5 12 12 H 1.48500 * 109.47130 * 330.00370 * 9 7 5 13 13 C 1.53008 * 109.47130 * 120.00006 * 2 1 3 14 14 N 1.46902 * 109.46965 * 294.99880 * 13 2 1 15 15 C 1.46892 * 110.99980 * 180.02562 * 14 13 2 16 16 C 1.53003 * 109.47137 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47145 * 179.97438 * 16 15 14 18 18 N 1.46901 * 109.47090 * 180.02562 * 17 16 15 19 19 C 1.46847 * 110.99995 * 66.28450 * 18 17 16 20 20 C 1.53040 * 109.52327 * 185.84150 * 19 18 17 21 21 C 1.53117 * 109.27567 * 300.81735 * 20 19 18 22 22 C 1.53117 * 109.16301 * 57.65806 * 21 20 19 23 23 C 1.46844 * 111.00216 * 190.48972 * 18 17 16 24 24 H 1.08992 * 109.46763 * 294.18038 * 23 18 17 25 25 C 1.53006 * 109.46110 * 54.14545 * 23 18 17 26 26 H 1.09001 * 109.47157 * 299.99592 * 1 2 3 27 27 H 1.08997 * 109.47135 * 60.00635 * 1 2 3 28 28 H 1.09009 * 109.46880 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47202 * 185.00016 * 4 2 1 30 30 H 1.08999 * 109.47128 * 305.00041 * 4 2 1 31 31 H 0.96994 * 119.99693 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47224 * 175.00280 * 13 2 1 33 33 H 1.09000 * 109.46985 * 54.99801 * 13 2 1 34 34 H 1.00907 * 110.99934 * 56.04308 * 14 13 2 35 35 H 1.08996 * 109.47606 * 60.00337 * 15 14 13 36 36 H 1.09002 * 109.47147 * 299.99800 * 15 14 13 37 37 H 1.09005 * 109.46851 * 60.00505 * 16 15 14 38 38 H 1.08993 * 109.47451 * 300.00387 * 16 15 14 39 39 H 1.09002 * 109.47318 * 300.00023 * 17 16 15 40 40 H 1.08996 * 109.47428 * 60.00556 * 17 16 15 41 41 H 1.08999 * 109.46493 * 305.85229 * 19 18 17 42 42 H 1.08997 * 109.46612 * 65.83455 * 19 18 17 43 43 H 1.08990 * 109.50589 * 60.75857 * 20 19 18 44 44 H 1.09004 * 109.50033 * 180.84002 * 20 19 18 45 45 H 1.09003 * 109.52079 * 177.56548 * 21 20 19 46 46 H 1.08998 * 109.52668 * 297.75027 * 21 20 19 47 47 H 1.09001 * 109.50194 * 62.28473 * 22 21 20 48 48 H 1.08998 * 109.50304 * 182.36577 * 22 21 20 49 49 H 1.09002 * 109.46692 * 52.49681 * 25 23 18 50 50 H 1.09001 * 109.47350 * 172.49252 * 25 23 18 51 51 H 1.08998 * 109.47042 * 292.50339 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4765 6 1 1.0806 0.9744 -2.3757 7 6 1.9933 -0.4019 -3.7282 8 7 1.6457 0.2775 -4.7993 9 14 2.9637 -1.9885 -3.9026 10 1 2.0245 -3.1327 -4.0199 11 1 3.8126 -1.9183 -5.1190 12 1 3.8253 -2.1757 -2.7077 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.1258 -0.6264 3.6672 16 6 1.7034 0.1917 4.8892 17 6 2.1970 -0.5001 6.1614 18 7 1.7909 0.2851 7.3347 19 6 0.3305 0.2860 7.4876 20 6 -0.0639 1.2279 8.6275 21 6 0.6033 0.7598 9.9237 22 6 2.1207 0.7214 9.7225 23 6 2.4517 -0.2057 8.5508 24 1 2.0999 -1.2129 8.7741 25 6 3.9659 -0.2316 8.3332 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 3.1263 -0.7995 -1.2055 30 1 1.6055 -1.7199 -1.2951 31 1 1.8930 -0.0454 -5.6799 32 1 3.1263 -0.7995 1.2057 33 1 1.6054 -1.7198 1.2952 34 1 0.6528 0.1794 2.4753 35 1 3.2127 -0.7036 3.6401 36 1 1.6921 -1.6245 3.7301 37 1 0.6165 0.2692 4.9165 38 1 2.1373 1.1895 4.8260 39 1 1.7626 -1.4978 6.2244 40 1 3.2838 -0.5780 6.1344 41 1 -0.1316 0.6249 6.5603 42 1 -0.0115 -0.7234 7.7160 43 1 0.2656 2.2402 8.3937 44 1 -1.1469 1.2170 8.7504 45 1 0.3601 1.4525 10.7294 46 1 0.2444 -0.2373 10.1787 47 1 2.4846 1.7258 9.5059 48 1 2.5986 0.3487 10.6285 49 1 4.2989 0.7444 7.9800 50 1 4.4642 -0.4670 9.2736 51 1 4.2134 -0.9904 7.5908 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504816.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:05 Heat of formation + Delta-G solvation = -31.434001 kcal Electronic energy + Delta-G solvation = -22296.692483 eV Core-core repulsion = 19229.328381 eV Total energy + Delta-G solvation = -3067.364101 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.72421 -37.28211 -35.24607 -33.74687 -32.89904 -32.05820 -30.24159 -27.59776 -27.30030 -26.01122 -24.64837 -23.18055 -21.86285 -21.51274 -21.00996 -19.96106 -18.93652 -16.81833 -16.33482 -16.09705 -15.62449 -14.87790 -14.79991 -14.65491 -14.40168 -14.08697 -13.86675 -13.66737 -13.45531 -13.01134 -12.64117 -12.52239 -12.30741 -12.18149 -12.12165 -11.94041 -11.70438 -11.59889 -11.40338 -11.24619 -11.11601 -11.00114 -10.91680 -10.70038 -10.49220 -10.40775 -10.37423 -9.77919 -9.70550 -9.40141 -9.02944 -8.56773 -8.49303 -8.17227 -5.99536 -3.96244 3.32918 3.40444 3.44430 3.50977 4.34814 4.41584 4.49034 4.50324 4.54020 4.74175 4.87699 4.99820 5.00948 5.14731 5.16080 5.20416 5.31201 5.33855 5.35039 5.37294 5.50160 5.50527 5.56069 5.59016 5.64551 5.67860 5.71411 5.74293 5.80323 5.82312 5.90691 5.97709 6.05698 6.10713 6.15902 6.24455 6.41067 6.49091 6.79584 6.85637 6.88028 6.99555 7.08994 7.28758 7.35662 7.51748 7.64592 7.85564 8.60248 9.06359 9.63420 11.13901 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038449 B = 0.002282 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.063663 B =12267.817741 C =12745.359619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.076 4.076 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.689 5.689 15 C 0.060 3.940 16 C -0.112 4.112 17 C 0.053 3.947 18 N -0.532 5.532 19 C 0.052 3.948 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.036 0.964 25 C -0.150 4.150 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.039 0.961 29 H 0.015 0.985 30 H 0.009 0.991 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.338 0.662 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -1.901 30.856 30.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.066 4.066 14 N -0.321 5.321 15 C -0.071 4.071 16 C -0.151 4.151 17 C -0.075 4.075 18 N -0.257 5.257 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.027 4.027 24 H 0.054 0.946 25 C -0.207 4.207 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.040 0.960 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.360 -1.002 30.557 30.576 hybrid contribution -0.404 -2.551 -0.125 2.586 sum -0.044 -3.553 30.432 30.639 Atomic orbital electron populations 1.21752 0.96279 1.00442 1.00829 1.21033 0.95193 1.00228 0.93012 0.90989 1.19605 0.95937 0.95666 0.93464 1.21140 1.35210 1.09551 0.89085 0.90802 1.25040 0.95700 0.96972 0.95981 1.69918 1.47271 1.39300 0.97979 0.86796 0.80647 0.84308 0.77623 1.20473 1.21483 1.19080 1.22158 1.00250 0.94382 0.89858 1.60517 1.19649 1.50514 1.01397 1.21886 1.00552 0.94819 0.89805 1.21560 1.00850 1.00632 0.92020 1.22160 1.01228 0.94287 0.89874 1.61943 1.06878 1.54121 1.02740 1.22143 0.87987 0.97996 0.99437 1.21586 0.99659 1.00093 0.94175 1.21589 0.95620 1.01104 0.97669 1.21631 0.95912 1.00594 0.96782 1.21595 0.94660 0.96214 0.90235 0.94564 1.21939 0.94378 1.02790 1.01618 0.94696 0.91323 0.94155 0.96682 0.97294 0.92858 0.91556 0.95993 0.84302 0.91249 0.96017 0.92275 0.90137 0.95287 0.90061 0.90200 0.95274 0.90964 0.91662 0.91842 0.92490 0.90958 0.91748 0.91418 0.92238 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.52 2.55 -90.62 -0.23 -1.75 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.60 8.96 -34.44 -0.31 -14.91 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.87 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 9 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 1.04 5.14 -3.82 -0.02 1.02 16 14 N -0.69 -9.95 6.50 -113.78 -0.74 -10.69 16 15 C 0.06 0.71 5.69 -3.83 -0.02 0.69 16 16 C -0.11 -1.15 5.42 -26.73 -0.14 -1.30 16 17 C 0.05 0.48 4.69 -3.83 -0.02 0.46 16 18 N -0.53 -4.76 4.49 -226.69 -1.02 -5.78 16 19 C 0.05 0.44 5.29 -3.83 -0.02 0.42 16 20 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 21 C -0.12 -0.80 6.00 -26.61 -0.16 -0.96 16 22 C -0.11 -0.77 5.37 -26.65 -0.14 -0.91 16 23 C 0.08 0.64 2.44 -67.72 -0.17 0.47 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 C -0.15 -1.07 8.53 37.16 0.32 -0.75 16 26 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 27 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 28 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 29 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.34 4.64 6.98 -39.29 -0.27 4.37 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.60 6.44 -51.93 -0.33 0.26 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.08 0.73 5.80 -51.93 -0.30 0.43 16 41 H 0.08 0.69 6.23 -51.93 -0.32 0.36 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 51 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 LS Contribution 379.64 15.07 5.72 5.72 Total: -1.00 -30.02 379.64 -11.09 -41.10 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -10.21 Total: -1.06 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -0.95 Total: -19.26 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.98 Total: -43.87 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.02 -11.09 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504816.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.670 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds