Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47229 * 2 1 4 4 C 1.53002 * 109.47305 * 119.99389 * 2 1 3 5 5 C 1.50692 * 109.47541 * 295.00163 * 4 2 1 6 6 H 1.08002 * 119.99845 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00534 * 179.97438 * 5 4 2 8 8 N 1.31503 * 120.00294 * 180.02562 * 7 5 4 9 9 Si 1.86808 * 119.99580 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47013 * 90.00049 * 9 7 5 11 11 H 1.48492 * 109.46839 * 209.99859 * 9 7 5 12 12 H 1.48501 * 109.46867 * 329.99945 * 9 7 5 13 13 C 1.52996 * 109.47374 * 239.99887 * 2 1 3 14 14 N 1.46900 * 109.47468 * 64.99492 * 13 2 1 15 15 C 1.46894 * 111.00163 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47151 * 179.97438 * 15 14 13 17 17 C 1.52995 * 109.47352 * 180.02562 * 16 15 14 18 18 N 1.46901 * 109.47277 * 180.02562 * 17 16 15 19 19 C 1.46847 * 110.99936 * 66.27947 * 18 17 16 20 20 C 1.53035 * 109.52291 * 185.84028 * 19 18 17 21 21 C 1.53121 * 109.27874 * 300.82075 * 20 19 18 22 22 C 1.53112 * 109.16151 * 57.65582 * 21 20 19 23 23 C 1.46848 * 111.00345 * 190.49182 * 18 17 16 24 24 H 1.09008 * 109.45728 * 294.17889 * 23 18 17 25 25 C 1.53001 * 109.46241 * 54.14320 * 23 18 17 26 26 H 1.09003 * 109.46897 * 300.00092 * 1 2 3 27 27 H 1.09002 * 109.47534 * 60.00256 * 1 2 3 28 28 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46720 * 55.00434 * 4 2 1 30 30 H 1.09004 * 109.47301 * 174.99676 * 4 2 1 31 31 H 0.97008 * 120.00233 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.46895 * 304.99455 * 13 2 1 33 33 H 1.08999 * 109.47260 * 185.00048 * 13 2 1 34 34 H 1.00908 * 110.99748 * 56.04677 * 14 13 2 35 35 H 1.09006 * 109.47292 * 60.00769 * 15 14 13 36 36 H 1.08994 * 109.47360 * 300.00276 * 15 14 13 37 37 H 1.09003 * 109.47252 * 300.00629 * 16 15 14 38 38 H 1.09006 * 109.46859 * 60.00410 * 16 15 14 39 39 H 1.09003 * 109.47140 * 300.00311 * 17 16 15 40 40 H 1.08996 * 109.47138 * 60.00161 * 17 16 15 41 41 H 1.09002 * 109.46362 * 305.85407 * 19 18 17 42 42 H 1.09000 * 109.46257 * 65.83565 * 19 18 17 43 43 H 1.08997 * 109.50726 * 60.76251 * 20 19 18 44 44 H 1.09006 * 109.50564 * 180.84081 * 20 19 18 45 45 H 1.09007 * 109.52351 * 177.56192 * 21 20 19 46 46 H 1.08994 * 109.52224 * 297.74873 * 21 20 19 47 47 H 1.09006 * 109.50586 * 62.28307 * 22 21 20 48 48 H 1.09000 * 109.50410 * 182.36390 * 22 21 20 49 49 H 1.09000 * 109.47020 * 52.49649 * 25 23 18 50 50 H 1.08997 * 109.46768 * 172.50421 * 25 23 18 51 51 H 1.09006 * 109.46905 * 292.49877 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9924 -0.4020 3.7284 8 7 1.6441 0.2770 4.7994 9 14 2.9629 -1.9886 3.9030 10 1 4.4163 -1.6850 3.8793 11 1 2.6147 -2.6427 5.1898 12 1 2.6290 -2.8993 2.7785 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0373 -2.4456 15 6 2.1258 -0.6267 -3.6671 16 6 1.7023 0.1906 -4.8892 17 6 2.1959 -0.5012 -6.1614 18 7 1.7898 0.2838 -7.3348 19 6 2.4741 1.5828 -7.3613 20 6 1.9213 2.4286 -8.5107 21 6 2.1395 1.6886 -9.8333 22 6 1.4579 0.3195 -9.7615 23 6 2.0240 -0.4652 -8.5759 24 1 3.0952 -0.6113 -8.7153 25 6 1.3313 -1.8267 -8.4882 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7197 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 1.8914 -0.0459 5.6801 32 1 1.6054 -1.7199 -1.2950 33 1 3.1263 -0.7995 -1.2055 34 1 1.9881 0.9873 -2.3967 35 1 1.6921 -1.6248 -3.7300 36 1 3.2126 -0.7038 -3.6399 37 1 0.6153 0.2674 -4.9161 38 1 2.1356 1.1889 -4.8266 39 1 3.2828 -0.5783 -6.1347 40 1 1.7623 -1.4993 -6.2238 41 1 2.3075 2.1005 -6.4167 42 1 3.5431 1.4273 -7.5066 43 1 0.8550 2.5963 -8.3591 44 1 2.4399 3.3870 -8.5394 45 1 1.7085 2.2677 -10.6502 46 1 3.2077 1.5553 -10.0042 47 1 0.3842 0.4539 -9.6295 48 1 1.6452 -0.2291 -10.6846 49 1 0.2853 -1.6852 -8.2162 50 1 1.3912 -2.3276 -9.4543 51 1 1.8242 -2.4370 -7.7313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -31.786344 kcal Electronic energy + Delta-G solvation = -22288.433854 eV Core-core repulsion = 19221.054474 eV Total energy + Delta-G solvation = -3067.379380 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.72382 -37.21063 -35.23655 -33.76201 -32.90079 -32.05586 -30.26053 -27.57903 -27.28153 -25.93479 -24.54004 -23.13321 -21.90645 -21.56166 -21.01865 -19.96214 -19.01806 -16.73895 -16.32985 -16.05611 -15.55402 -14.92114 -14.70196 -14.61636 -14.35709 -14.21615 -13.88048 -13.68739 -13.41403 -13.10787 -12.65052 -12.42630 -12.30563 -12.18123 -12.02876 -11.83827 -11.72379 -11.56024 -11.39915 -11.23209 -11.11485 -10.93369 -10.92214 -10.65221 -10.49305 -10.40682 -10.33157 -9.88703 -9.62900 -9.37534 -9.02728 -8.56841 -8.49301 -8.15293 -5.99609 -3.96263 3.32643 3.40195 3.44262 3.50883 4.34562 4.41508 4.48879 4.50172 4.53962 4.74116 4.87644 4.99771 5.00862 5.14669 5.15945 5.20317 5.31151 5.33843 5.35067 5.37242 5.50130 5.50391 5.55752 5.58705 5.63735 5.65978 5.71687 5.79609 5.80089 5.82169 5.90602 6.05635 6.06331 6.10720 6.21877 6.35117 6.46468 6.63255 6.84909 6.87685 6.89669 7.08136 7.18228 7.29772 7.33971 7.51145 7.63970 7.85682 8.60336 9.06411 9.63368 11.13817 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038031 B = 0.002267 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.056456 B =12346.953919 C =12651.406157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 H 0.059 0.941 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.062 3.938 14 N -0.686 5.686 15 C 0.060 3.940 16 C -0.112 4.112 17 C 0.052 3.948 18 N -0.532 5.532 19 C 0.052 3.948 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.036 0.964 25 C -0.150 4.150 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.007 0.993 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.337 0.663 35 H 0.068 0.932 36 H 0.022 0.978 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -0.554 -30.821 30.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.048 4.048 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.317 5.317 15 C -0.070 4.070 16 C -0.150 4.150 17 C -0.076 4.076 18 N -0.257 5.257 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.027 4.027 24 H 0.054 0.946 25 C -0.207 4.207 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.155 0.845 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.709 -0.765 -30.628 30.646 hybrid contribution 2.503 -0.817 0.299 2.650 sum 3.213 -1.582 -30.329 30.540 Atomic orbital electron populations 1.21595 0.95231 1.00634 1.00702 1.21004 0.96408 0.98970 0.92893 0.92277 1.19619 0.95322 0.96266 0.93543 1.21139 1.35253 1.09483 0.89087 0.90808 1.25037 0.95761 0.96905 0.95980 1.69913 1.47258 1.39313 0.97984 0.86802 0.80555 0.84584 0.77465 1.20480 1.21477 1.19075 1.22172 0.96954 0.97795 0.89780 1.60488 1.64027 1.05736 1.01412 1.21883 0.96774 0.98440 0.89932 1.21556 1.02823 0.98632 0.92014 1.22160 0.97688 0.97863 0.89846 1.61944 1.58339 1.03623 1.01781 1.22143 0.95326 0.90473 0.99618 1.21587 1.02165 0.97776 0.93984 1.21589 1.00345 0.96386 0.97665 1.21630 1.01080 0.95481 0.96725 1.21596 0.97545 0.93539 0.90030 0.94564 1.21937 1.01744 0.95394 1.01638 0.92268 0.93633 0.94246 0.96614 0.97450 0.92858 0.91605 0.95975 0.84514 0.91307 0.96007 0.90176 0.92233 0.95289 0.90091 0.90185 0.95271 0.90972 0.91657 0.91843 0.92486 0.90966 0.91752 0.91427 0.92241 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.15 0.33 -2.10 16 2 C -0.07 -1.48 2.48 -90.62 -0.22 -1.70 16 3 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.01 -0.23 3.52 -27.89 -0.10 -0.33 16 5 C -0.51 -14.63 8.96 -34.44 -0.31 -14.94 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -28.21 13.96 55.43 0.77 -27.43 16 9 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.06 1.03 5.07 -3.83 -0.02 1.01 16 14 N -0.69 -9.68 5.96 -113.78 -0.68 -10.36 16 15 C 0.06 0.70 5.68 -3.83 -0.02 0.68 16 16 C -0.11 -1.13 5.41 -26.73 -0.14 -1.28 16 17 C 0.05 0.48 4.69 -3.83 -0.02 0.46 16 18 N -0.53 -4.73 4.49 -226.69 -1.02 -5.75 16 19 C 0.05 0.44 5.29 -3.83 -0.02 0.42 16 20 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 21 C -0.12 -0.80 6.00 -26.61 -0.16 -0.96 16 22 C -0.11 -0.76 5.37 -26.66 -0.14 -0.91 16 23 C 0.08 0.64 2.44 -67.72 -0.17 0.47 16 24 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 25 C -0.15 -1.06 8.53 37.16 0.32 -0.74 16 26 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 27 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 30 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.34 4.55 8.73 -39.29 -0.34 4.20 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.60 6.44 -51.93 -0.33 0.26 16 39 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.08 0.72 5.80 -51.93 -0.30 0.42 16 41 H 0.08 0.69 6.23 -51.93 -0.32 0.37 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 51 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -30.05 381.91 -11.10 -41.16 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -10.33 Total: -1.59 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.94 Total: -19.16 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.92 Total: -43.54 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.05 -11.10 -41.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.370 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds