Wall clock time and date at job start Tue Mar 31 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47356 * 2 1 4 4 C 1.53008 * 109.47085 * 239.99976 * 2 1 3 5 5 C 1.50700 * 109.47027 * 64.99640 * 4 2 1 6 6 H 1.07999 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99796 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00246 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46888 * 60.00835 * 9 7 5 11 11 H 1.48501 * 109.47094 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47486 * 300.00747 * 9 7 5 13 13 C 1.53000 * 109.47239 * 120.00399 * 2 1 3 14 14 N 1.46901 * 109.46874 * 294.99476 * 13 2 1 15 15 C 1.46901 * 111.00268 * 179.97438 * 14 13 2 16 16 C 1.52996 * 109.47098 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46966 * 180.02562 * 16 15 14 18 18 N 1.46899 * 109.47188 * 180.02562 * 17 16 15 19 19 C 1.46845 * 110.99678 * 289.69226 * 18 17 16 20 20 C 1.53041 * 109.52450 * 174.16113 * 19 18 17 21 21 C 1.53121 * 109.27732 * 59.17952 * 20 19 18 22 22 C 1.53117 * 109.16223 * 302.34600 * 21 20 19 23 23 C 1.46846 * 111.00080 * 165.48542 * 18 17 16 24 24 H 1.09007 * 109.46592 * 65.83369 * 23 18 17 25 25 C 1.52994 * 109.46196 * 305.85013 * 23 18 17 26 26 H 1.09008 * 109.46940 * 300.00015 * 1 2 3 27 27 H 1.09004 * 109.47262 * 59.99599 * 1 2 3 28 28 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46886 * 185.00275 * 4 2 1 30 30 H 1.09003 * 109.46946 * 305.00078 * 4 2 1 31 31 H 0.97004 * 120.00559 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47427 * 54.99230 * 13 2 1 33 33 H 1.08998 * 109.47423 * 174.99816 * 13 2 1 34 34 H 1.00903 * 111.00368 * 303.95855 * 14 13 2 35 35 H 1.08999 * 109.46891 * 300.00229 * 15 14 13 36 36 H 1.08999 * 109.46766 * 59.99974 * 15 14 13 37 37 H 1.09009 * 109.47231 * 299.99764 * 16 15 14 38 38 H 1.08999 * 109.47536 * 60.00197 * 16 15 14 39 39 H 1.09009 * 109.46966 * 299.99377 * 17 16 15 40 40 H 1.08999 * 109.47721 * 59.99781 * 17 16 15 41 41 H 1.09001 * 109.46650 * 294.17411 * 19 18 17 42 42 H 1.08999 * 109.46535 * 54.14671 * 19 18 17 43 43 H 1.08999 * 109.50314 * 299.23958 * 20 19 18 44 44 H 1.09001 * 109.50777 * 179.12146 * 20 19 18 45 45 H 1.09001 * 109.52470 * 182.43920 * 21 20 19 46 46 H 1.09001 * 109.52248 * 62.25647 * 21 20 19 47 47 H 1.08999 * 109.50312 * 297.71864 * 22 21 20 48 48 H 1.08997 * 109.54010 * 177.61320 * 22 21 20 49 49 H 1.09004 * 109.46876 * 67.29656 * 25 23 18 50 50 H 1.09002 * 109.47318 * 187.29220 * 25 23 18 51 51 H 1.08996 * 109.47775 * 307.29626 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6412 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9931 -0.4018 -3.7283 8 7 2.6763 -1.5188 -3.8511 9 14 1.4994 0.5633 -5.2496 10 1 2.0918 1.9236 -5.1866 11 1 1.9943 -0.1368 -6.4621 12 1 0.0195 0.6700 -5.3096 13 6 2.0400 -0.7213 1.2492 14 7 1.6515 0.0374 2.4456 15 6 2.1248 -0.6272 3.6672 16 6 1.7015 0.1903 4.8892 17 6 2.1950 -0.5015 6.1615 18 7 1.7881 0.2830 7.3349 19 6 2.5415 1.5410 7.4138 20 6 1.9925 2.3950 8.5590 21 6 2.1186 1.6195 9.8733 22 6 1.3657 0.2921 9.7478 23 6 1.9329 -0.5009 8.5681 24 1 2.9883 -0.7089 8.7445 25 6 1.1700 -1.8195 8.4265 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1262 -0.7995 -1.2056 30 1 1.6053 -1.7199 -1.2952 31 1 2.9236 -1.8418 -4.7318 32 1 1.6053 -1.7198 1.2952 33 1 3.1263 -0.7996 1.2055 34 1 1.9882 0.9873 2.3966 35 1 1.6903 -1.6249 3.7296 36 1 3.2117 -0.7052 3.6405 37 1 2.1356 1.1883 4.8270 38 1 0.6146 0.2679 4.9157 39 1 1.7611 -1.4996 6.2240 40 1 3.2819 -0.5789 6.1349 41 1 3.5940 1.3233 7.5954 42 1 2.4401 2.0846 6.4745 43 1 0.9437 2.6247 8.3712 44 1 2.5621 3.3218 8.6273 45 1 1.6892 2.2065 10.6852 46 1 3.1705 1.4235 10.0811 47 1 0.3071 0.4888 9.5786 48 1 1.4869 -0.2838 10.6652 49 1 1.6550 -2.4407 7.6734 50 1 1.1681 -2.3427 9.3827 51 1 0.1436 -1.6147 8.1223 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:10 Heat of formation + Delta-G solvation = -35.305515 kcal Electronic energy + Delta-G solvation = -22234.344477 eV Core-core repulsion = 19166.812494 eV Total energy + Delta-G solvation = -3067.531983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.68941 -37.09964 -35.14838 -33.71821 -32.87131 -32.02807 -30.13948 -27.43506 -26.81738 -25.87280 -24.50710 -23.18066 -22.09657 -21.55531 -21.00444 -19.93816 -18.96391 -16.30390 -16.28877 -16.01963 -15.47914 -14.84710 -14.67239 -14.58410 -14.47807 -14.06785 -13.94564 -13.70164 -13.37026 -12.87832 -12.56686 -12.29378 -12.19775 -12.15116 -12.03962 -11.72369 -11.52384 -11.37601 -11.28057 -11.18791 -11.07666 -10.89884 -10.81826 -10.69287 -10.48540 -10.36793 -10.25778 -10.17351 -9.65780 -9.10556 -8.92761 -8.53938 -8.30070 -8.06253 -5.94910 -3.95987 3.36354 3.40453 3.43161 3.54024 4.39449 4.43780 4.49313 4.55180 4.57912 4.76439 4.91852 5.02387 5.04011 5.18137 5.19614 5.25125 5.34460 5.39749 5.40578 5.41912 5.52589 5.54887 5.59292 5.61580 5.68267 5.73705 5.79085 5.82933 5.84628 5.92488 5.93278 6.08131 6.15923 6.20611 6.27999 6.46557 6.60195 6.73702 6.88509 6.90927 7.06262 7.22826 7.24347 7.42701 7.69540 7.73815 7.89009 8.05438 8.49644 9.10211 9.67110 11.16587 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.002164 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.350355 B =12936.071500 C =13227.637380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.687 5.687 15 C 0.060 3.940 16 C -0.110 4.110 17 C 0.051 3.949 18 N -0.532 5.532 19 C 0.053 3.947 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.036 0.964 25 C -0.150 4.150 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.022 0.978 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 3.386 28.440 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.318 5.318 15 C -0.071 4.071 16 C -0.148 4.148 17 C -0.077 4.077 18 N -0.257 5.257 19 C -0.075 4.075 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.027 4.027 24 H 0.054 0.946 25 C -0.207 4.207 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.153 0.847 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.558 3.087 28.290 28.501 hybrid contribution 1.738 0.398 -0.920 2.006 sum 0.180 3.485 27.371 27.592 Atomic orbital electron populations 1.21585 0.95710 1.00558 1.00136 1.21199 0.96025 0.98871 0.94050 0.92894 1.19122 0.95866 0.95588 0.90470 1.21207 1.34581 1.08270 0.91003 0.92610 1.25029 0.95373 0.95129 0.99104 1.69957 1.39092 1.21242 1.23442 0.86683 0.78909 0.80077 0.82463 1.20328 1.21402 1.20257 1.22145 0.97039 0.97726 0.89534 1.60506 1.64054 1.05683 1.01535 1.21882 0.96806 0.98422 0.89944 1.21530 1.02719 0.98589 0.92000 1.22188 0.97774 0.97846 0.89906 1.61938 1.56696 1.04915 1.02129 1.22131 0.94714 0.91129 0.99498 1.21587 1.02185 0.97662 0.94070 1.21588 1.00204 0.96542 0.97640 1.21631 1.00776 0.95730 0.96776 1.21596 0.97709 0.93323 0.90097 0.94561 1.21944 1.01406 0.95751 1.01636 0.93896 0.92819 0.94194 0.96985 0.96567 0.93072 0.91622 0.95932 0.84693 0.91322 0.96015 0.92362 0.90268 0.90053 0.95178 0.95260 0.90306 0.90984 0.91686 0.91865 0.92483 0.90977 0.91758 0.92409 0.92247 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.06 1.14 5.07 -3.82 -0.02 1.12 16 14 N -0.69 -10.21 5.95 -113.78 -0.68 -10.89 16 15 C 0.06 0.74 5.69 -3.83 -0.02 0.72 16 16 C -0.11 -1.17 5.50 -26.73 -0.15 -1.31 16 17 C 0.05 0.48 4.75 -3.82 -0.02 0.47 16 18 N -0.53 -4.87 4.46 -226.68 -1.01 -5.88 16 19 C 0.05 0.45 5.30 -3.83 -0.02 0.43 16 20 C -0.12 -0.86 6.09 -26.65 -0.16 -1.03 16 21 C -0.12 -0.82 6.00 -26.61 -0.16 -0.98 16 22 C -0.11 -0.78 5.37 -26.65 -0.14 -0.93 16 23 C 0.08 0.65 2.44 -67.72 -0.17 0.49 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 C -0.15 -1.10 8.56 37.15 0.32 -0.79 16 26 H 0.04 0.77 7.75 -51.92 -0.40 0.37 16 27 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 4.75 8.73 -39.29 -0.34 4.41 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.61 6.59 -51.92 -0.34 0.27 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.75 5.61 -51.92 -0.29 0.46 16 40 H 0.03 0.29 8.07 -51.93 -0.42 -0.13 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.70 6.42 -51.93 -0.33 0.36 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.43 6.46 -51.93 -0.34 0.09 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -29.63 385.67 -11.47 -41.10 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -10.37 Total: -1.85 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.94 Total: -18.65 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.95 Total: -43.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.63 -11.47 -41.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.797 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds