Wall clock time and date at job start Tue Mar 31 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47333 * 2 1 4 4 C 1.53000 * 109.47133 * 119.99544 * 2 1 3 5 5 C 1.50697 * 109.47132 * 295.00094 * 4 2 1 6 6 H 1.07995 * 120.00172 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00029 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99861 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00449 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46812 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46998 * 119.99959 * 9 7 5 12 12 H 1.48494 * 109.47362 * 240.00388 * 9 7 5 13 13 C 1.53000 * 109.47310 * 239.99731 * 2 1 3 14 14 N 1.46895 * 109.47042 * 64.99785 * 13 2 1 15 15 C 1.46898 * 111.00149 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47285 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47149 * 180.02562 * 16 15 14 18 18 N 1.46901 * 109.47230 * 179.97438 * 17 16 15 19 19 C 1.46850 * 110.99906 * 289.65119 * 18 17 16 20 20 C 1.53042 * 109.52020 * 174.15824 * 19 18 17 21 21 C 1.53118 * 109.27636 * 59.18402 * 20 19 18 22 22 C 1.53123 * 109.15241 * 302.33383 * 21 20 19 23 23 C 1.46850 * 111.00000 * 165.44027 * 18 17 16 24 24 H 1.09003 * 109.46024 * 65.83710 * 23 18 17 25 25 C 1.52995 * 109.46400 * 305.85636 * 23 18 17 26 26 H 1.08999 * 109.46701 * 59.99720 * 1 2 3 27 27 H 1.08991 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46733 * 300.00452 * 1 2 3 29 29 H 1.09008 * 109.46860 * 54.99907 * 4 2 1 30 30 H 1.08999 * 109.47448 * 174.99807 * 4 2 1 31 31 H 0.97003 * 120.00338 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46762 * 305.00192 * 13 2 1 33 33 H 1.08998 * 109.47279 * 185.00313 * 13 2 1 34 34 H 1.00909 * 111.00218 * 56.04720 * 14 13 2 35 35 H 1.09003 * 109.47241 * 60.00532 * 15 14 13 36 36 H 1.08997 * 109.47165 * 300.00060 * 15 14 13 37 37 H 1.08994 * 109.47700 * 59.99965 * 16 15 14 38 38 H 1.09007 * 109.46756 * 299.99874 * 16 15 14 39 39 H 1.09000 * 109.47714 * 59.99504 * 17 16 15 40 40 H 1.09007 * 109.46981 * 299.99482 * 17 16 15 41 41 H 1.08992 * 109.46041 * 294.17723 * 19 18 17 42 42 H 1.09001 * 109.46116 * 54.15567 * 19 18 17 43 43 H 1.08996 * 109.49791 * 179.12396 * 20 19 18 44 44 H 1.08996 * 109.50580 * 299.20136 * 20 19 18 45 45 H 1.08999 * 109.52809 * 62.24481 * 21 20 19 46 46 H 1.09002 * 109.51887 * 182.37470 * 21 20 19 47 47 H 1.09003 * 109.50984 * 297.73096 * 22 21 20 48 48 H 1.08997 * 109.49466 * 177.60852 * 22 21 20 49 49 H 1.09001 * 109.47188 * 67.31392 * 25 23 18 50 50 H 1.08998 * 109.46989 * 187.31144 * 25 23 18 51 51 H 1.09002 * 109.47439 * 307.31164 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0807 0.9747 2.3756 7 6 1.9924 -0.4020 3.7283 8 7 2.6755 -1.5190 3.8513 9 14 1.4988 0.5631 5.2497 10 1 0.7423 1.7747 4.8433 11 1 0.6441 -0.2853 6.1184 12 1 2.7171 0.9670 5.9965 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.1248 -0.6273 -3.6671 16 6 1.7025 0.1907 -4.8892 17 6 2.1950 -0.5018 -6.1615 18 7 1.7889 0.2833 -7.3349 19 6 0.3373 0.2061 -7.5430 20 6 -0.0670 1.1477 -8.6798 21 6 0.6728 0.7437 -9.9580 22 6 2.1816 0.7859 -9.6999 23 6 2.5208 -0.1452 -8.5337 24 1 2.2345 -1.1656 -8.7886 25 6 4.0250 -0.0913 -8.2592 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6054 -1.7198 1.2953 30 1 3.1263 -0.7994 1.2057 31 1 2.9229 -1.8419 4.7319 32 1 1.6054 -1.7198 -1.2950 33 1 3.1264 -0.7996 -1.2055 34 1 1.9882 0.9873 -2.3967 35 1 1.6904 -1.6250 -3.7296 36 1 3.2117 -0.7052 -3.6405 37 1 2.1371 1.1883 -4.8266 38 1 0.6155 0.2690 -4.9160 39 1 1.7600 -1.4993 -6.2240 40 1 3.2819 -0.5804 -6.1349 41 1 0.0615 -0.8159 -7.8024 42 1 -0.1769 0.5000 -6.6279 43 1 -1.1423 1.0785 -8.8443 44 1 0.1955 2.1718 -8.4148 45 1 0.3803 -0.2664 -10.2446 46 1 0.4200 1.4375 -10.7598 47 1 2.4800 1.8043 -9.4510 48 1 2.7128 0.4584 -10.5935 49 1 4.2867 -0.8479 -7.5195 50 1 4.5701 -0.2829 -9.1834 51 1 4.2898 0.8954 -7.8791 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504819.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:12 Heat of formation + Delta-G solvation = -35.528861 kcal Electronic energy + Delta-G solvation = -22235.923242 eV Core-core repulsion = 19168.381574 eV Total energy + Delta-G solvation = -3067.541668 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.68310 -37.09846 -35.14697 -33.71567 -32.87014 -32.02899 -30.13537 -27.43535 -26.82074 -25.87366 -24.50904 -23.17067 -22.08682 -21.56349 -21.00534 -19.92900 -18.96630 -16.39947 -16.28861 -15.86608 -15.49192 -14.84267 -14.73807 -14.59038 -14.47418 -14.03954 -13.90868 -13.79318 -13.24153 -12.83021 -12.61160 -12.30296 -12.25672 -12.15883 -12.12907 -11.58445 -11.54732 -11.35315 -11.30935 -11.22746 -11.06284 -10.89684 -10.82289 -10.70955 -10.44744 -10.36655 -10.26054 -10.16139 -9.66244 -9.11035 -8.90976 -8.53619 -8.30896 -8.06250 -5.95437 -3.96300 3.33665 3.41113 3.45475 3.54519 4.39136 4.44163 4.49387 4.56689 4.57413 4.78782 4.94188 5.01443 5.03965 5.17847 5.21446 5.23332 5.35309 5.36887 5.40363 5.43755 5.52843 5.56977 5.60655 5.62136 5.70396 5.74189 5.78694 5.82749 5.84871 5.92286 5.94508 6.08455 6.17149 6.19869 6.23938 6.45935 6.59793 6.73132 6.88619 6.91782 7.05894 7.22177 7.24040 7.42740 7.69988 7.74141 7.88807 8.05195 8.49492 9.10418 9.66946 11.16154 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.041823 B = 0.002171 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.334701 B =12896.423872 C =13280.249760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.060 3.940 16 C -0.110 4.110 17 C 0.051 3.949 18 N -0.532 5.532 19 C 0.053 3.947 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C 0.081 3.919 24 H 0.037 0.963 25 C -0.150 4.150 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.337 0.663 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.059 0.941 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 2.966 -28.500 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.149 4.149 17 C -0.077 4.077 18 N -0.258 5.258 19 C -0.075 4.075 20 C -0.155 4.155 21 C -0.160 4.160 22 C -0.149 4.149 23 C -0.027 4.027 24 H 0.055 0.945 25 C -0.207 4.207 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.154 0.846 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.712 3.047 -28.320 28.535 hybrid contribution 0.569 -0.345 0.859 1.086 sum -1.143 2.701 -27.461 27.618 Atomic orbital electron populations 1.21585 0.95753 1.00512 1.00128 1.21199 0.95991 0.98909 0.94050 0.92847 1.19133 0.95900 0.95587 0.90502 1.21284 1.34412 1.08231 0.90972 0.92495 1.25037 0.95398 0.95130 0.99135 1.69980 1.39232 1.21292 1.23223 0.86566 0.78218 0.80137 0.83272 1.19739 1.21107 1.21137 1.22141 0.97086 0.97679 0.89540 1.60509 1.64067 1.05765 1.01529 1.21879 0.97009 0.98222 0.89955 1.21527 1.01846 0.99443 0.92045 1.22184 1.01042 0.94538 0.89963 1.61941 1.05097 1.55460 1.03254 1.22140 0.88239 0.97831 0.99289 1.21585 0.99354 1.00255 0.94305 1.21589 0.95475 1.01234 0.97683 1.21629 0.95914 1.00556 0.96792 1.21595 0.94118 0.96586 0.90442 0.94517 1.21943 0.94422 1.02787 1.01570 0.93933 0.94230 0.92803 0.96580 0.96947 0.93189 0.91695 0.95869 0.84570 0.91562 0.95770 0.91382 0.91235 0.94951 0.90275 0.95189 0.90136 0.91661 0.91033 0.92465 0.91882 0.91016 0.91776 0.92436 0.92240 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 14 N -0.69 -10.21 5.95 -113.79 -0.68 -10.89 16 15 C 0.06 0.74 5.69 -3.82 -0.02 0.71 16 16 C -0.11 -1.17 5.50 -26.73 -0.15 -1.32 16 17 C 0.05 0.48 4.75 -3.82 -0.02 0.46 16 18 N -0.53 -4.88 4.46 -226.68 -1.01 -5.89 16 19 C 0.05 0.46 5.30 -3.83 -0.02 0.44 16 20 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 21 C -0.12 -0.82 6.00 -26.61 -0.16 -0.98 16 22 C -0.11 -0.78 5.37 -26.65 -0.14 -0.92 16 23 C 0.08 0.65 2.44 -67.72 -0.17 0.49 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 C -0.15 -1.10 8.56 37.16 0.32 -0.78 16 26 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 29 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.34 4.78 8.73 -39.29 -0.34 4.43 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.78 6.59 -51.93 -0.34 0.44 16 39 H 0.03 0.32 8.07 -51.93 -0.42 -0.10 16 40 H 0.08 0.73 5.61 -51.93 -0.29 0.44 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.73 6.42 -51.93 -0.33 0.40 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.43 6.46 -51.93 -0.34 0.09 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -29.64 385.67 -11.47 -41.11 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -10.37 Total: -1.87 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -0.94 Total: -18.64 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: -0.95 Total: -43.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.64 -11.47 -41.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504819.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.585 kcal (2) G-P(sol) polarization free energy of solvation -29.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds