Wall clock time and date at job start Tue Mar 31 2020 05:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47059 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.47439 * 180.02562 * 16 15 14 18 18 N 1.46897 * 109.47333 * 179.97438 * 17 16 15 19 19 C 1.46857 * 110.99976 * 45.78877 * 18 17 16 20 20 C 1.53035 * 109.52178 * 185.83985 * 19 18 17 21 21 C 1.53122 * 109.27715 * 300.82059 * 20 19 18 22 22 C 1.52999 * 109.57159 * 177.59567 * 21 20 19 23 23 C 1.53114 * 109.16278 * 57.65660 * 21 20 19 24 24 C 1.46843 * 111.00199 * 169.99752 * 18 17 16 25 25 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 28 28 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 29 29 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 30 30 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 31 31 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 32 32 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 33 33 H 1.00902 * 111.00152 * 56.04664 * 14 13 2 34 34 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 35 35 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 36 36 H 1.09008 * 109.47237 * 300.00217 * 16 15 14 37 37 H 1.08999 * 109.47484 * 59.99634 * 16 15 14 38 38 H 1.08993 * 109.46624 * 300.00000 * 17 16 15 39 39 H 1.08999 * 109.46678 * 60.00026 * 17 16 15 40 40 H 1.08995 * 109.45935 * 305.85311 * 19 18 17 41 41 H 1.09000 * 109.45757 * 65.82071 * 19 18 17 42 42 H 1.08998 * 109.50241 * 180.88319 * 20 19 18 43 43 H 1.08996 * 109.50534 * 60.76061 * 20 19 18 44 44 H 1.09000 * 109.52398 * 297.75007 * 21 20 19 45 45 H 1.08996 * 109.46952 * 300.28130 * 22 21 20 46 46 H 1.08994 * 109.47390 * 60.28861 * 22 21 20 47 47 H 1.09005 * 109.47117 * 180.28954 * 22 21 20 48 48 H 1.08998 * 109.50541 * 182.40327 * 23 21 20 49 49 H 1.09000 * 109.53519 * 62.30422 * 23 21 20 50 50 H 1.09000 * 109.46394 * 294.18081 * 24 18 17 51 51 H 1.09004 * 109.46108 * 54.15525 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7025 0.1904 -4.8892 17 6 2.1961 -0.5015 -6.1614 18 7 1.7891 0.2829 -7.3349 19 6 2.0619 1.7117 -7.1332 20 6 1.4950 2.5115 -8.3084 21 6 2.1431 2.0275 -9.6085 22 6 1.5376 2.7812 -10.7944 23 6 1.8853 0.5269 -9.7704 24 6 2.4408 -0.2153 -8.5528 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 3.1263 -0.7995 1.2057 29 1 1.6053 -1.7197 1.2953 30 1 2.9286 -2.0221 3.0617 31 1 3.1263 -0.7997 -1.2054 32 1 1.6053 -1.7200 -1.2950 33 1 1.9883 0.9871 -2.3967 34 1 3.2127 -0.7042 -3.6399 35 1 1.6921 -1.6250 -3.7299 36 1 0.6155 0.2673 -4.9162 37 1 2.1358 1.1886 -4.8266 38 1 3.2829 -0.5787 -6.1347 39 1 1.7623 -1.4995 -6.2238 40 1 1.5920 2.0440 -6.2075 41 1 3.1385 1.8706 -7.0713 42 1 1.7114 3.5702 -8.1661 43 1 0.4165 2.3639 -8.3624 44 1 3.2169 2.2106 -9.5705 45 1 0.4635 2.5993 -10.8304 46 1 1.7216 3.8492 -10.6784 47 1 1.9963 2.4318 -11.7195 48 1 2.3804 0.1678 -10.6726 49 1 0.8130 0.3476 -9.8478 50 1 3.5156 -0.0474 -8.4843 51 1 2.2460 -1.2826 -8.6583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505603.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:35 Heat of formation + Delta-G solvation = -40.994982 kcal Electronic energy + Delta-G solvation = -22065.792160 eV Core-core repulsion = 18998.013463 eV Total energy + Delta-G solvation = -3067.778696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.63587 -37.26509 -35.73976 -34.23492 -32.39047 -31.29399 -30.59728 -28.10581 -26.41175 -25.45429 -23.94246 -23.57215 -22.41685 -21.93432 -20.84806 -19.96893 -19.23413 -16.68517 -16.41472 -15.93350 -15.32262 -15.12918 -14.76835 -14.48804 -14.28942 -14.10003 -14.06935 -13.67580 -13.38519 -13.18711 -12.74277 -12.41875 -12.31285 -12.28845 -11.94637 -11.70408 -11.56033 -11.54779 -11.32082 -11.30327 -11.01406 -10.96429 -10.85649 -10.64842 -10.60957 -10.38581 -10.16884 -10.06496 -9.79181 -9.41640 -8.57361 -8.44536 -8.27620 -8.16927 -6.30313 -3.98179 3.46542 3.48757 3.56291 3.67229 4.30588 4.41302 4.44858 4.45834 4.59537 4.79518 4.88876 4.98788 5.02417 5.11524 5.19017 5.19252 5.27727 5.32542 5.35287 5.42749 5.45482 5.46734 5.53033 5.56707 5.63847 5.68187 5.72182 5.78808 5.80576 5.82910 5.84444 6.04824 6.07613 6.08372 6.15409 6.34733 6.47035 6.61873 6.81205 6.83523 6.91966 7.09044 7.14729 7.30358 7.43809 7.57969 7.65018 8.29482 8.52714 8.94849 9.73238 11.10048 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044915 B = 0.002062 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.250564 B =13574.086724 C =13913.542719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.014 3.986 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.063 3.937 14 N -0.687 5.687 15 C 0.060 3.940 16 C -0.119 4.119 17 C 0.058 3.942 18 N -0.537 5.537 19 C 0.047 3.953 20 C -0.112 4.112 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.111 4.111 24 C 0.055 3.945 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.054 0.946 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.267 0.733 31 H 0.022 0.978 32 H 0.065 0.935 33 H 0.336 0.664 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.030 0.970 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.553 5.630 -28.906 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.317 5.317 15 C -0.070 4.070 16 C -0.157 4.157 17 C -0.071 4.071 18 N -0.261 5.261 19 C -0.081 4.081 20 C -0.150 4.150 21 C -0.114 4.114 22 C -0.203 4.203 23 C -0.149 4.149 24 C -0.073 4.073 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.025 0.975 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.153 0.847 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.049 0.951 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.598 5.287 -27.342 27.894 hybrid contribution 1.875 0.188 -1.546 2.437 sum 0.276 5.475 -28.888 29.404 Atomic orbital electron populations 1.21575 0.95458 1.00563 1.00320 1.21066 0.96200 0.98803 0.93423 0.92737 1.19254 0.95091 0.95652 0.92388 1.22035 1.38564 1.10279 0.92278 0.93203 1.25837 0.94771 0.97173 1.01400 1.70781 1.36335 1.14693 1.33450 0.83560 0.76070 0.75102 0.75632 1.20869 1.21544 1.21466 1.22155 0.96977 0.97759 0.89639 1.60508 1.64008 1.05685 1.01502 1.21885 0.96872 0.98477 0.89814 1.21713 1.02853 0.98790 0.92383 1.22084 0.97789 0.97764 0.89420 1.61984 1.58729 1.02868 1.02551 1.22240 0.98404 0.88047 0.99371 1.21659 1.01125 0.98650 0.93528 1.21197 0.99818 0.95214 0.95190 1.21807 1.01018 0.99968 0.97521 1.21641 1.02049 0.94462 0.96713 1.22082 0.95761 0.99379 0.90086 0.93741 0.94263 0.92660 0.97922 0.97471 0.92221 0.95990 0.91616 0.84664 0.95908 0.91173 0.90099 0.91896 0.95101 0.90504 0.89682 0.95221 0.91641 0.90990 0.91735 0.92539 0.92751 0.92841 0.91720 0.90998 0.95137 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.60 2.48 -90.62 -0.22 -1.82 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.25 16 5 C -0.59 -17.05 8.41 -34.44 -0.29 -17.34 16 6 H 0.05 1.41 7.06 -52.49 -0.37 1.04 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.56 13.65 55.43 0.76 -27.80 16 9 Si 1.07 25.73 29.90 -169.99 -5.08 20.65 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.69 -10.09 5.96 -113.78 -0.68 -10.77 16 15 C 0.06 0.73 5.68 -3.82 -0.02 0.70 16 16 C -0.12 -1.23 4.72 -26.73 -0.13 -1.35 16 17 C 0.06 0.54 5.27 -3.83 -0.02 0.52 16 18 N -0.54 -4.94 4.81 -234.67 -1.13 -6.07 16 19 C 0.05 0.41 4.85 -3.83 -0.02 0.39 16 20 C -0.11 -0.84 5.38 -26.65 -0.14 -0.98 16 21 C -0.10 -0.65 2.79 -90.50 -0.25 -0.90 16 22 C -0.15 -0.84 9.20 37.16 0.34 -0.50 16 23 C -0.11 -0.77 5.38 -26.65 -0.14 -0.91 16 24 C 0.05 0.44 5.42 -3.84 -0.02 0.42 16 25 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 28 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 29 H 0.01 0.19 8.00 -51.93 -0.42 -0.22 16 30 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.34 4.69 8.73 -39.29 -0.34 4.35 16 34 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.06 0.63 6.21 -51.93 -0.32 0.30 16 38 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.76 5.81 -51.93 -0.30 0.46 16 41 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 51 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -30.41 386.92 -11.59 -42.00 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -10.47 Total: -1.54 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -0.81 Total: -22.32 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -1.05 Total: -44.63 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.65 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.41 -11.59 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505603.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.004 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds