Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08994 * 109.46704 * 2 1 4 4 C 1.53001 * 109.46855 * 239.99996 * 2 1 3 5 5 C 1.50703 * 109.47012 * 65.00264 * 4 2 1 6 6 H 1.07998 * 119.99974 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00187 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99776 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00185 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.46813 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46906 * 119.99992 * 9 7 5 12 12 H 1.48497 * 109.46783 * 239.99773 * 9 7 5 13 13 C 1.52995 * 109.47130 * 120.00342 * 2 1 3 14 14 N 1.46906 * 109.46978 * 294.99913 * 13 2 1 15 15 C 1.46901 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46769 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46886 * 180.02562 * 16 15 14 18 18 N 1.46902 * 109.46901 * 180.02562 * 17 16 15 19 19 C 1.46839 * 111.00092 * 45.78796 * 18 17 16 20 20 C 1.53039 * 109.52305 * 185.83868 * 19 18 17 21 21 C 1.53125 * 109.27890 * 300.81995 * 20 19 18 22 22 C 1.52995 * 109.57442 * 177.58625 * 21 20 19 23 23 C 1.53118 * 109.15877 * 57.65365 * 21 20 19 24 24 C 1.46852 * 110.99971 * 169.99744 * 18 17 16 25 25 H 1.08994 * 109.47203 * 59.99889 * 1 2 3 26 26 H 1.08994 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46753 * 299.99894 * 1 2 3 28 28 H 1.09004 * 109.46816 * 184.99631 * 4 2 1 29 29 H 1.08993 * 109.47518 * 305.00266 * 4 2 1 30 30 H 0.96999 * 120.00038 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46859 * 175.00205 * 13 2 1 32 32 H 1.09002 * 109.47639 * 54.99873 * 13 2 1 33 33 H 1.00898 * 110.99995 * 303.95410 * 14 13 2 34 34 H 1.09002 * 109.47401 * 59.99808 * 15 14 13 35 35 H 1.09001 * 109.46874 * 299.99821 * 15 14 13 36 36 H 1.09001 * 109.47194 * 299.99524 * 16 15 14 37 37 H 1.08992 * 109.47399 * 59.99697 * 16 15 14 38 38 H 1.09001 * 109.47109 * 299.99380 * 17 16 15 39 39 H 1.09002 * 109.47508 * 59.99571 * 17 16 15 40 40 H 1.09001 * 109.46400 * 305.85111 * 19 18 17 41 41 H 1.08995 * 109.46502 * 65.82322 * 19 18 17 42 42 H 1.08994 * 109.50793 * 180.87369 * 20 19 18 43 43 H 1.09003 * 109.50071 * 60.75960 * 20 19 18 44 44 H 1.08991 * 109.52310 * 297.74805 * 21 20 19 45 45 H 1.08997 * 109.47792 * 300.28543 * 22 21 20 46 46 H 1.09003 * 109.47082 * 60.28363 * 22 21 20 47 47 H 1.08998 * 109.47076 * 180.28294 * 22 21 20 48 48 H 1.08998 * 109.49987 * 182.40758 * 23 21 20 49 49 H 1.09000 * 109.54004 * 62.30692 * 23 21 20 50 50 H 1.09005 * 109.46090 * 294.18098 * 24 18 17 51 51 H 1.09009 * 109.46391 * 54.14781 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6414 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5182 -3.8512 9 14 1.4984 0.5629 -5.2497 10 1 0.7401 1.7732 -4.8434 11 1 2.7162 0.9685 -5.9964 12 1 0.6451 -0.2869 -6.1185 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1259 -0.6267 3.6671 16 6 1.7024 0.1907 4.8892 17 6 2.1971 -0.5005 6.1613 18 7 1.7900 0.2840 7.3347 19 6 0.3838 0.6943 7.2314 20 6 0.0366 1.6274 8.3937 21 6 0.2788 0.8974 9.7178 22 6 -0.0088 1.8438 10.8849 23 6 1.7382 0.4384 9.7789 24 6 2.0361 -0.4602 8.5765 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.1264 -0.7994 -1.2056 29 1 1.6054 -1.7197 -1.2952 30 1 2.9251 -1.8407 -4.7318 31 1 3.1263 -0.7995 1.2055 32 1 1.6055 -1.7199 1.2951 33 1 1.9882 0.9872 2.3967 34 1 3.2128 -0.7039 3.6400 35 1 1.6921 -1.6247 3.7299 36 1 2.1358 1.1889 4.8266 37 1 0.6155 0.2676 4.9161 38 1 1.7640 -1.4988 6.2242 39 1 3.2840 -0.5770 6.1342 40 1 0.2261 1.2159 6.2874 41 1 -0.2556 -0.1875 7.2702 42 1 -1.0113 1.9194 8.3255 43 1 0.6663 2.5160 8.3476 44 1 -0.3787 0.0305 9.7813 45 1 0.6475 2.7116 10.8195 46 1 -1.0479 2.1702 10.8406 47 1 0.1689 1.3241 11.8264 48 1 1.9059 -0.1193 10.7003 49 1 2.3952 1.3078 9.7550 50 1 1.3889 -1.3368 8.6089 51 1 3.0785 -0.7772 8.6095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602505604.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = -37.352710 kcal Electronic energy + Delta-G solvation = -22035.029588 eV Core-core repulsion = 18967.408832 eV Total energy + Delta-G solvation = -3067.620756 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.59941 -37.16940 -35.65927 -34.06728 -32.26528 -31.27091 -30.58843 -28.10744 -26.75458 -25.41027 -23.94624 -23.57918 -22.37554 -21.84561 -20.79988 -19.93787 -18.97418 -16.36173 -16.30406 -15.96185 -15.22021 -14.91962 -14.78972 -14.63870 -14.40514 -14.18579 -13.96995 -13.84070 -13.13219 -12.92252 -12.73537 -12.46466 -12.29309 -12.14341 -12.08071 -11.54690 -11.51826 -11.42369 -11.34190 -11.23105 -10.98358 -10.90672 -10.82277 -10.69985 -10.57451 -10.34009 -10.26895 -10.17780 -9.67339 -9.12025 -8.91830 -8.54068 -8.31434 -8.08714 -5.95997 -3.96941 3.33256 3.40728 3.45056 3.60122 4.34893 4.44840 4.47172 4.48371 4.52839 4.89062 4.90355 5.01650 5.06019 5.18344 5.20555 5.23616 5.30287 5.34768 5.39221 5.39835 5.43003 5.55146 5.59738 5.61563 5.68539 5.74673 5.76603 5.81714 5.85573 5.88358 5.91997 6.09108 6.13924 6.14872 6.19163 6.44413 6.58211 6.71678 6.84655 6.87165 7.04452 7.20845 7.22724 7.40393 7.68103 7.72869 7.87940 8.04561 8.48748 9.09754 9.66369 11.15584 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.047663 B = 0.002055 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.322887 B =13619.371085 C =14011.786545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.060 3.940 16 C -0.120 4.120 17 C 0.057 3.943 18 N -0.537 5.537 19 C 0.047 3.953 20 C -0.112 4.112 21 C -0.096 4.096 22 C -0.146 4.146 23 C -0.111 4.111 24 C 0.055 3.945 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.012 0.988 29 H 0.016 0.984 30 H 0.259 0.741 31 H 0.024 0.976 32 H 0.065 0.935 33 H 0.337 0.663 34 H 0.026 0.974 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.031 0.969 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.987 3.637 28.735 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.071 4.071 18 N -0.262 5.262 19 C -0.081 4.081 20 C -0.150 4.150 21 C -0.114 4.114 22 C -0.203 4.203 23 C -0.149 4.149 24 C -0.073 4.073 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.049 0.951 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.256 3.653 28.653 29.068 hybrid contribution 0.330 -0.247 -1.022 1.102 sum -2.925 3.406 27.631 27.993 Atomic orbital electron populations 1.21585 0.95749 1.00517 1.00124 1.21203 0.95997 0.98921 0.94062 0.92835 1.19132 0.95916 0.95586 0.90485 1.21287 1.34411 1.08280 0.90983 0.92490 1.25036 0.95382 0.95125 0.99131 1.69982 1.39184 1.21309 1.23233 0.86564 0.78227 0.80128 0.83267 1.19743 1.21132 1.21100 1.22145 0.97132 0.97680 0.89501 1.60532 1.64023 1.05779 1.01555 1.21876 0.97136 0.98200 0.89851 1.21713 1.01941 0.99657 0.92463 1.22087 1.00733 0.94773 0.89497 1.61988 1.20514 1.41927 1.01797 1.22241 0.87961 0.98197 0.99670 1.21661 1.01114 0.98780 0.93404 1.21197 0.96709 0.98367 0.95153 1.21807 1.01463 0.99407 0.97634 1.21639 0.96409 0.99966 0.96838 1.22082 1.00863 0.94657 0.89716 0.92783 0.94225 0.93957 0.96928 0.96570 0.93184 0.95815 0.91665 0.84586 0.95615 0.91484 0.91247 0.90783 0.94872 0.90734 0.89586 0.95092 0.91628 0.91074 0.91698 0.92573 0.92752 0.92860 0.91749 0.91056 0.95080 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.95 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.13 5.07 -3.82 -0.02 1.11 16 14 N -0.69 -10.10 5.96 -113.78 -0.68 -10.77 16 15 C 0.06 0.73 5.68 -3.82 -0.02 0.71 16 16 C -0.12 -1.23 4.72 -26.73 -0.13 -1.36 16 17 C 0.06 0.54 5.27 -3.82 -0.02 0.52 16 18 N -0.54 -4.97 4.81 -234.67 -1.13 -6.10 16 19 C 0.05 0.41 4.85 -3.84 -0.02 0.39 16 20 C -0.11 -0.85 5.38 -26.65 -0.14 -0.99 16 21 C -0.10 -0.66 2.79 -90.50 -0.25 -0.91 16 22 C -0.15 -0.85 9.20 37.15 0.34 -0.51 16 23 C -0.11 -0.77 5.38 -26.65 -0.14 -0.92 16 24 C 0.05 0.44 5.42 -3.83 -0.02 0.42 16 25 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.34 4.71 8.73 -39.29 -0.34 4.36 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.80 6.21 -51.93 -0.32 0.48 16 38 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.79 5.81 -51.93 -0.30 0.49 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 51 H 0.07 0.56 8.12 -51.92 -0.42 0.14 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -29.60 388.23 -11.60 -41.21 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -10.53 Total: -2.21 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.83 Total: -18.35 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -1.07 Total: -43.38 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.60 -11.60 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602505604.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.853 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds