Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47293 * 2 1 4 4 C 1.52999 * 109.47412 * 119.99701 * 2 1 3 5 5 C 1.50697 * 109.47428 * 295.00631 * 4 2 1 6 6 H 1.08002 * 119.99676 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00359 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99803 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00245 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46984 * 59.99803 * 9 7 5 11 11 H 1.48491 * 109.47460 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47113 * 300.00480 * 9 7 5 13 13 C 1.52998 * 109.47398 * 240.00118 * 2 1 3 14 14 N 1.46901 * 109.47479 * 64.99622 * 13 2 1 15 15 C 1.46896 * 111.00335 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47205 * 180.02562 * 15 14 13 17 17 C 1.53003 * 109.47158 * 174.08756 * 16 15 14 18 18 C 1.53002 * 109.47253 * 294.09070 * 16 15 14 19 19 N 1.46900 * 109.47205 * 54.08670 * 16 15 14 20 20 C 1.46847 * 111.00203 * 187.73287 * 19 16 15 21 21 C 1.53031 * 109.52513 * 174.16545 * 20 19 16 22 22 C 1.53117 * 109.28211 * 59.17878 * 21 20 19 23 23 C 1.53119 * 109.16019 * 302.34683 * 22 21 20 24 24 C 1.46853 * 110.99613 * 63.52504 * 19 16 15 25 25 H 1.08997 * 109.47283 * 299.99886 * 1 2 3 26 26 H 1.08997 * 109.47198 * 60.00211 * 1 2 3 27 27 H 1.09002 * 109.46587 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46854 * 54.99959 * 4 2 1 29 29 H 1.09001 * 109.47661 * 174.99757 * 4 2 1 30 30 H 0.97000 * 120.00121 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47264 * 185.00192 * 13 2 1 32 32 H 1.09006 * 109.46921 * 304.99610 * 13 2 1 33 33 H 1.00904 * 111.00048 * 303.96052 * 14 13 2 34 34 H 1.09006 * 109.47152 * 299.99801 * 15 14 13 35 35 H 1.08993 * 109.47136 * 59.99938 * 15 14 13 36 36 H 1.08998 * 109.46594 * 59.99962 * 17 16 15 37 37 H 1.09003 * 109.46777 * 179.97438 * 17 16 15 38 38 H 1.08994 * 109.47169 * 299.99985 * 17 16 15 39 39 H 1.09004 * 109.47036 * 59.99901 * 18 16 15 40 40 H 1.08998 * 109.47339 * 179.97438 * 18 16 15 41 41 H 1.09002 * 109.46786 * 299.99930 * 18 16 15 42 42 H 1.09005 * 109.46310 * 294.17936 * 20 19 16 43 43 H 1.08995 * 109.46412 * 54.14502 * 20 19 16 44 44 H 1.09001 * 109.50346 * 299.24009 * 21 20 19 45 45 H 1.09001 * 109.50553 * 179.11977 * 21 20 19 46 46 H 1.08998 * 109.52432 * 182.44550 * 22 21 20 47 47 H 1.08998 * 109.52583 * 62.25107 * 22 21 20 48 48 H 1.09005 * 109.50392 * 297.71373 * 23 22 21 49 49 H 1.09003 * 109.50676 * 177.59431 * 23 22 21 50 50 H 1.08995 * 109.46056 * 305.85030 * 24 19 16 51 51 H 1.08999 * 109.46556 * 65.82682 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6757 -1.5191 3.8512 9 14 1.4987 0.5628 5.2496 10 1 0.0188 0.6704 5.3089 11 1 1.9937 -0.1371 6.4621 12 1 2.0917 1.9229 5.1871 13 6 2.0401 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.1248 -0.6271 -3.6672 16 6 1.7025 0.1909 -4.8892 17 6 2.3192 -0.4194 -6.1494 18 6 0.1773 0.1773 -5.0098 19 7 2.1692 1.5754 -4.7368 20 6 1.6280 2.4332 -5.7987 21 6 2.0142 3.8888 -5.5270 22 6 3.5401 4.0064 -5.4783 23 6 4.0822 3.0673 -4.3973 24 6 3.6361 1.6354 -4.7017 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7994 1.2056 30 1 2.9223 -1.8424 4.7318 31 1 3.1264 -0.7994 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 0.6529 0.1793 -2.4753 34 1 3.2118 -0.7050 -3.6406 35 1 1.6905 -1.6249 -3.7297 36 1 1.9729 -1.4467 -6.2625 37 1 2.0179 0.1632 -7.0201 38 1 3.4058 -0.4096 -6.0635 39 1 -0.2620 0.6121 -4.1119 40 1 -0.1236 0.7604 -5.8801 41 1 -0.1690 -0.8500 -5.1229 42 1 2.0366 2.1224 -6.7603 43 1 0.5419 2.3435 -5.8198 44 1 1.5943 4.2046 -4.5720 45 1 1.6256 4.5232 -6.3236 46 1 3.8189 5.0333 -5.2420 47 1 3.9580 3.7279 -6.4457 48 1 3.6948 3.3701 -3.4244 49 1 5.1712 3.1147 -4.3867 50 1 4.0084 0.9663 -3.9260 51 1 4.0354 1.3284 -5.6684 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506411.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = -21.601662 kcal Electronic energy + Delta-G solvation = -23697.064001 eV Core-core repulsion = 20630.126262 eV Total energy + Delta-G solvation = -3066.937739 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96641 -36.98334 -35.54232 -33.23877 -31.69645 -31.04587 -30.26778 -27.52962 -27.02108 -26.14975 -24.44940 -23.83488 -22.65536 -21.90747 -20.10654 -19.01249 -18.55644 -16.75290 -16.26466 -15.20756 -14.98605 -14.75850 -14.45451 -14.44222 -14.24573 -14.07643 -13.59187 -13.44482 -13.06951 -12.88863 -12.58277 -12.34824 -12.13422 -12.03300 -11.97258 -11.75027 -11.60123 -11.32522 -11.15965 -11.12840 -10.83877 -10.81115 -10.73078 -10.66196 -10.29712 -10.25754 -10.11558 -10.06797 -9.61989 -9.05936 -8.89525 -8.27148 -8.09065 -7.85191 -5.92167 -3.92913 3.38354 3.42370 3.45253 3.82114 4.47560 4.55460 4.70813 4.74127 4.85808 4.90597 4.96693 5.13525 5.23944 5.31091 5.36337 5.43561 5.47601 5.52062 5.55710 5.62479 5.66607 5.70275 5.74384 5.79353 5.89169 5.90562 5.92024 5.96088 5.97528 6.00863 6.13246 6.15046 6.20395 6.25534 6.36625 6.40694 6.58035 6.66808 7.05925 7.19681 7.22218 7.25015 7.27714 7.58118 7.76607 7.87404 7.95567 8.08924 8.53302 9.13487 9.70114 11.19425 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.003449 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.155007 B = 8115.915584 C = 8638.036879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.669 5.669 15 C 0.073 3.927 16 C 0.110 3.890 17 C -0.181 4.181 18 C -0.146 4.146 19 N -0.501 5.501 20 C 0.049 3.951 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.116 4.116 24 C 0.059 3.941 25 H 0.061 0.939 26 H 0.032 0.968 27 H 0.038 0.962 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.337 0.663 34 H 0.067 0.933 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.060 0.940 50 H 0.080 0.920 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 5.716 -22.962 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.301 5.301 15 C -0.058 4.058 16 C 0.020 3.980 17 C -0.240 4.240 18 C -0.204 4.204 19 N -0.225 5.225 20 C -0.079 4.079 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.069 4.069 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.098 0.902 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.706 6.201 -22.333 23.189 hybrid contribution -0.457 -0.709 0.054 0.845 sum -1.164 5.492 -22.280 22.976 Atomic orbital electron populations 1.21724 0.96845 1.00208 1.00202 1.21181 0.94711 1.00098 0.94074 0.91620 1.19104 0.96050 0.95297 0.90477 1.21220 1.34524 1.08202 0.91023 0.92632 1.25014 0.95383 0.95094 0.99051 1.69957 1.39177 1.21287 1.23389 0.86700 0.78842 0.80178 0.82531 1.20333 1.21429 1.20277 1.22126 1.00046 0.94201 0.90073 1.60450 1.19629 1.49641 1.00360 1.21948 1.00224 0.93851 0.89743 1.21070 0.95052 0.88509 0.93414 1.22477 1.01518 1.01440 0.98591 1.21986 0.94298 1.01566 1.02520 1.61992 1.08603 1.06923 1.44964 1.22194 1.00079 0.93287 0.92329 1.21565 0.95944 0.95654 1.02183 1.21564 0.95890 0.99513 0.98753 1.21568 0.99528 0.94465 0.99849 1.22068 0.87705 0.97551 0.99543 0.92035 0.94924 0.94245 0.96901 0.96772 0.93112 0.91882 0.96433 0.84303 0.91441 0.95630 0.92186 0.92534 0.92225 0.91228 0.92404 0.92489 0.95627 0.90596 0.90873 0.92239 0.92198 0.92893 0.90556 0.92110 0.90152 0.95731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.15 5.14 -3.82 -0.02 1.13 16 14 N -0.67 -10.02 6.20 -113.78 -0.71 -10.73 16 15 C 0.07 0.92 4.22 -3.83 -0.02 0.90 16 16 C 0.11 1.16 0.47 -131.60 -0.06 1.10 16 17 C -0.18 -1.67 7.76 37.16 0.29 -1.39 16 18 C -0.15 -1.43 7.78 37.16 0.29 -1.14 16 19 N -0.50 -5.62 4.18 -219.02 -0.91 -6.54 16 20 C 0.05 0.48 4.67 -3.84 -0.02 0.46 16 21 C -0.12 -1.08 6.09 -26.65 -0.16 -1.25 16 22 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 23 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 24 C 0.06 0.66 4.59 -3.83 -0.02 0.64 16 25 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 26 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.34 4.94 5.28 -39.29 -0.21 4.74 16 34 H 0.07 0.88 6.66 -51.93 -0.35 0.54 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 6.74 -51.93 -0.35 0.15 16 38 H 0.06 0.56 6.48 -51.93 -0.34 0.23 16 39 H 0.07 0.76 6.70 -51.93 -0.35 0.41 16 40 H 0.06 0.51 6.19 -51.93 -0.32 0.18 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.03 0.24 6.80 -51.93 -0.35 -0.11 16 43 H 0.08 0.72 5.84 -51.93 -0.30 0.41 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 1.02 6.25 -51.93 -0.32 0.69 16 51 H 0.02 0.26 6.59 -51.93 -0.34 -0.08 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -29.42 371.63 -10.55 -39.97 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -9.79 Total: 0.45 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -0.46 Total: -19.09 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: -0.88 Total: -43.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.42 -10.55 -39.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506411.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.368 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds