Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 C 1.52996 * 109.47395 * 240.00039 * 2 1 3 5 5 C 1.50702 * 109.47330 * 64.99785 * 4 2 1 6 6 H 1.08000 * 119.99465 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99900 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00066 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99836 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47184 * 89.99850 * 9 7 5 11 11 H 1.48500 * 109.46877 * 210.00062 * 9 7 5 12 12 H 1.48501 * 109.47233 * 330.00024 * 9 7 5 13 13 C 1.53003 * 109.46974 * 119.99837 * 2 1 3 14 14 N 1.46902 * 109.47108 * 295.00270 * 13 2 1 15 15 C 1.46897 * 111.00074 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47328 * 182.39177 * 15 14 13 17 17 C 1.53000 * 109.47214 * 64.97717 * 16 15 14 18 18 C 1.53001 * 109.47582 * 184.97903 * 16 15 14 19 19 N 1.46907 * 109.47316 * 304.98356 * 16 15 14 20 20 C 1.46854 * 110.99181 * 303.76711 * 19 16 15 21 21 C 1.53038 * 109.51676 * 174.16205 * 20 19 16 22 22 C 1.53120 * 109.28371 * 59.17957 * 21 20 19 23 23 C 1.53125 * 109.15761 * 302.34167 * 22 21 20 24 24 C 1.46846 * 111.00366 * 179.55678 * 19 16 15 25 25 H 1.09005 * 109.46527 * 60.00271 * 1 2 3 26 26 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47312 * 300.00305 * 1 2 3 28 28 H 1.08994 * 109.47136 * 185.00498 * 4 2 1 29 29 H 1.09006 * 109.47052 * 304.99791 * 4 2 1 30 30 H 0.96998 * 120.00163 * 180.02562 * 8 7 5 31 31 H 1.08988 * 109.47138 * 175.00346 * 13 2 1 32 32 H 1.08995 * 109.46773 * 54.99504 * 13 2 1 33 33 H 1.00902 * 111.00313 * 56.04579 * 14 13 2 34 34 H 1.08992 * 109.47321 * 62.39087 * 15 14 13 35 35 H 1.08999 * 109.47085 * 302.39066 * 15 14 13 36 36 H 1.09004 * 109.46999 * 60.00302 * 17 16 15 37 37 H 1.09002 * 109.47617 * 179.97438 * 17 16 15 38 38 H 1.09005 * 109.47647 * 300.00056 * 17 16 15 39 39 H 1.08998 * 109.46454 * 60.00015 * 18 16 15 40 40 H 1.08993 * 109.47096 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.46677 * 300.00493 * 18 16 15 42 42 H 1.09000 * 109.46175 * 294.17345 * 20 19 16 43 43 H 1.08993 * 109.46553 * 54.14389 * 20 19 16 44 44 H 1.09003 * 109.50578 * 299.23263 * 21 20 19 45 45 H 1.09008 * 109.50320 * 179.12038 * 21 20 19 46 46 H 1.08996 * 109.52399 * 182.44315 * 22 21 20 47 47 H 1.08996 * 109.52012 * 62.24654 * 22 21 20 48 48 H 1.08997 * 109.50443 * 297.71794 * 23 22 21 49 49 H 1.08998 * 109.50137 * 177.59330 * 23 22 21 50 50 H 1.09004 * 109.46130 * 305.85515 * 24 19 16 51 51 H 1.08997 * 109.45718 * 65.81864 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3756 7 6 1.9926 -0.4023 -3.7283 8 7 2.6749 -1.5198 -3.8511 9 14 1.4990 0.5628 -5.2497 10 1 2.5650 1.5416 -5.5824 11 1 1.3113 -0.3712 -6.3889 12 1 0.2283 1.2850 -4.9871 13 6 2.0401 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1246 -0.6271 3.6673 16 6 1.6508 0.1587 4.8916 17 6 0.1236 0.1096 4.9693 18 6 2.2461 -0.4614 6.1573 19 7 2.0905 1.5557 4.7772 20 6 3.5473 1.6367 4.6103 21 6 3.9520 3.0894 4.3495 22 6 3.5055 3.9582 5.5286 23 6 1.9916 3.8182 5.7110 24 6 1.6436 2.3444 5.9325 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 2.9222 -1.8428 -4.7317 31 1 3.1263 -0.7994 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 0.6528 0.1793 2.4753 34 1 3.2138 -0.6670 3.6605 35 1 1.7242 -1.6400 3.7083 36 1 -0.2028 -0.9270 5.0542 37 1 -0.2141 0.6690 5.8418 38 1 -0.3006 0.5514 4.0676 39 1 3.3341 -0.4263 6.1019 40 1 1.9088 0.0987 7.0294 41 1 1.9198 -1.4979 6.2421 42 1 4.0370 1.2804 5.5166 43 1 3.8512 1.0178 3.7662 44 1 3.4736 3.4420 3.4358 45 1 5.0349 3.1516 4.2412 46 1 3.7531 5.0005 5.3274 47 1 4.0136 3.6305 6.4354 48 1 1.4823 4.1822 4.8188 49 1 1.6738 4.4010 6.5756 50 1 0.5649 2.2394 6.0485 51 1 2.1423 1.9847 6.8324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506412.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -21.976561 kcal Electronic energy + Delta-G solvation = -23707.107946 eV Core-core repulsion = 20640.153950 eV Total energy + Delta-G solvation = -3066.953996 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97583 -36.98980 -35.54497 -33.24758 -31.70956 -31.00916 -30.27046 -27.51862 -27.03076 -26.16025 -24.44803 -23.86755 -22.64997 -21.90627 -20.10927 -19.02474 -18.55314 -16.77088 -16.26925 -15.20884 -14.94930 -14.77837 -14.47086 -14.41244 -14.25971 -14.07740 -13.59199 -13.46057 -13.06108 -12.90722 -12.59774 -12.30277 -12.13072 -12.06782 -11.97026 -11.78230 -11.59370 -11.32508 -11.16391 -11.12498 -10.85265 -10.79918 -10.73290 -10.65953 -10.29431 -10.25812 -10.10874 -10.05869 -9.63091 -9.06671 -8.89149 -8.27889 -8.11035 -7.87780 -5.92768 -3.93459 3.36622 3.42642 3.46169 3.82021 4.47121 4.55140 4.69476 4.74367 4.86295 4.90601 4.96652 5.12998 5.24509 5.31339 5.36098 5.43100 5.48432 5.52139 5.56469 5.62586 5.66755 5.70309 5.74550 5.79568 5.88668 5.90350 5.92211 5.96388 5.97056 6.01141 6.12699 6.14839 6.21919 6.27311 6.36015 6.41330 6.57308 6.66062 7.05037 7.19255 7.21723 7.25130 7.26987 7.56157 7.76201 7.86024 7.94708 8.08354 8.52744 9.13166 9.69691 11.18848 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021890 B = 0.003439 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.824986 B = 8138.998320 C = 8667.556893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.670 5.670 15 C 0.070 3.930 16 C 0.109 3.891 17 C -0.144 4.144 18 C -0.181 4.181 19 N -0.502 5.502 20 C 0.058 3.942 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.115 4.115 24 C 0.049 3.951 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.032 0.968 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.063 0.937 32 H 0.018 0.982 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.074 0.926 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 5.594 22.952 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.303 5.303 15 C -0.060 4.060 16 C 0.019 3.981 17 C -0.201 4.201 18 C -0.240 4.240 19 N -0.226 5.226 20 C -0.070 4.070 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.079 4.079 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.819 6.101 22.355 23.187 hybrid contribution -0.370 -0.749 -0.101 0.842 sum -1.189 5.352 22.254 22.920 Atomic orbital electron populations 1.21726 0.96826 1.00219 1.00224 1.21182 0.94732 1.00081 0.94062 0.91628 1.19109 0.96051 0.95315 0.90490 1.21257 1.34457 1.08175 0.91008 0.92574 1.25016 0.95409 0.95076 0.99064 1.69966 1.39297 1.21239 1.23293 0.86641 0.78934 0.79817 0.82892 1.20743 1.21382 1.19911 1.22131 1.00053 0.94241 0.90063 1.60485 1.19828 1.49593 1.00373 1.21997 1.00194 0.94136 0.89699 1.21075 0.95289 0.88235 0.93503 1.21933 0.94187 1.01425 1.02572 1.22473 1.01441 1.01451 0.98670 1.61996 1.12549 1.08805 1.39289 1.22092 0.87420 0.97334 1.00109 1.21562 1.00058 0.94717 0.99026 1.21570 0.96033 0.99752 0.98397 1.21564 0.96273 0.95635 1.01851 1.22180 1.00317 0.93743 0.91626 0.92019 0.94235 0.94914 0.96774 0.96881 0.93168 0.91876 0.96371 0.84142 0.91330 0.95541 0.92536 0.92507 0.91247 0.92391 0.92369 0.92171 0.95922 0.89647 0.90589 0.92090 0.92211 0.92882 0.90941 0.92242 0.90807 0.95456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.78 37.16 0.33 -2.21 16 2 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.50 8.41 -34.44 -0.29 -14.79 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.13 5.14 -3.82 -0.02 1.11 16 14 N -0.67 -9.98 6.24 -113.79 -0.71 -10.69 16 15 C 0.07 0.88 4.01 -3.83 -0.02 0.86 16 16 C 0.11 1.16 0.47 -131.60 -0.06 1.09 16 17 C -0.14 -1.42 8.01 37.16 0.30 -1.12 16 18 C -0.18 -1.67 7.79 37.16 0.29 -1.39 16 19 N -0.50 -5.62 4.20 -219.01 -0.92 -6.54 16 20 C 0.06 0.66 4.67 -3.83 -0.02 0.64 16 21 C -0.12 -1.24 6.09 -26.65 -0.16 -1.41 16 22 C -0.12 -1.11 6.00 -26.60 -0.16 -1.27 16 23 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 24 C 0.05 0.48 4.65 -3.83 -0.02 0.46 16 25 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 31 H 0.06 1.16 8.14 -51.94 -0.42 0.74 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.34 4.95 5.16 -39.29 -0.20 4.75 16 34 H 0.07 0.89 6.51 -51.93 -0.34 0.55 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.50 6.27 -51.93 -0.33 0.18 16 38 H 0.07 0.76 6.63 -51.93 -0.34 0.42 16 39 H 0.06 0.55 6.62 -51.93 -0.34 0.21 16 40 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.24 6.70 -51.93 -0.35 -0.10 16 43 H 0.09 1.11 6.02 -51.93 -0.31 0.80 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.69 5.99 -51.93 -0.31 0.38 16 51 H 0.03 0.26 6.64 -51.93 -0.34 -0.08 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -29.32 371.35 -10.53 -39.85 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -9.77 Total: 0.52 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -0.45 Total: -19.09 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.89 Total: -43.82 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.32 -10.53 -39.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506412.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.869 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds