Wall clock time and date at job start Tue Mar 31 2020 06:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47125 * 2 1 4 4 C 1.52997 * 109.47280 * 120.00881 * 2 1 3 5 5 C 1.50701 * 109.47016 * 294.99628 * 4 2 1 6 6 H 1.08008 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99984 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00240 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99635 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47281 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47068 * 120.00055 * 9 7 5 12 12 H 1.48503 * 109.46869 * 239.99427 * 9 7 5 13 13 C 1.53004 * 109.46796 * 240.00589 * 2 1 3 14 14 N 1.46902 * 109.46969 * 64.99989 * 13 2 1 15 15 C 1.46908 * 110.99903 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47083 * 174.49201 * 15 14 13 17 17 N 1.46893 * 109.47382 * 55.29644 * 16 15 14 18 18 C 1.46900 * 111.00387 * 57.96324 * 17 16 15 19 19 C 1.46901 * 111.00147 * 181.92428 * 17 16 15 20 20 C 1.53004 * 109.46959 * 295.29413 * 16 15 14 21 21 C 1.52996 * 109.47023 * 300.00058 * 20 16 15 22 22 C 1.52993 * 109.47568 * 299.99998 * 21 20 16 23 23 C 1.53004 * 109.46947 * 59.99956 * 22 21 20 24 24 C 1.52994 * 109.47241 * 300.00066 * 23 22 21 25 25 H 1.08996 * 109.47451 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46804 * 299.99515 * 1 2 3 27 27 H 1.08996 * 109.47125 * 59.99254 * 1 2 3 28 28 H 1.09002 * 109.47377 * 54.99672 * 4 2 1 29 29 H 1.09001 * 109.46996 * 175.00050 * 4 2 1 30 30 H 0.96999 * 120.00200 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47180 * 304.99971 * 13 2 1 32 32 H 1.09000 * 109.47142 * 184.99993 * 13 2 1 33 33 H 1.00896 * 111.00363 * 56.05026 * 14 13 2 34 34 H 1.09001 * 109.46474 * 294.49177 * 15 14 13 35 35 H 1.09002 * 109.46606 * 54.49099 * 15 14 13 36 36 H 1.09007 * 109.46511 * 58.90035 * 18 17 16 37 37 H 1.08997 * 109.47344 * 178.89634 * 18 17 16 38 38 H 1.09001 * 109.46814 * 298.90586 * 18 17 16 39 39 H 1.08996 * 109.47610 * 59.99827 * 19 17 16 40 40 H 1.09001 * 109.47102 * 180.02562 * 19 17 16 41 41 H 1.09006 * 109.47016 * 299.99399 * 19 17 16 42 42 H 1.08999 * 109.46904 * 60.00552 * 20 16 15 43 43 H 1.09007 * 109.46805 * 180.02562 * 20 16 15 44 44 H 1.09012 * 109.46687 * 179.97438 * 21 20 16 45 45 H 1.08997 * 109.47121 * 60.00480 * 21 20 16 46 46 H 1.09007 * 109.47127 * 300.00449 * 22 21 20 47 47 H 1.09001 * 109.47688 * 180.02562 * 22 21 20 48 48 H 1.08999 * 109.46703 * 180.02562 * 23 22 21 49 49 H 1.08994 * 109.47103 * 60.00515 * 23 22 21 50 50 H 1.09004 * 109.47581 * 300.00360 * 24 23 22 51 51 H 1.08995 * 109.47202 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6414 0.0568 2.4765 6 1 1.0808 0.9744 2.3757 7 6 1.9934 -0.4021 3.7282 8 7 2.6765 -1.5192 3.8509 9 14 1.4987 0.5622 5.2496 10 1 0.7414 1.7733 4.8436 11 1 0.6454 -0.2876 6.1185 12 1 2.7166 0.9676 5.9964 13 6 2.0399 -0.7212 -1.2494 14 7 1.6513 0.0377 -2.4457 15 6 2.1246 -0.6268 -3.6674 16 6 1.5861 0.1147 -4.8925 17 7 1.9703 1.5304 -4.8161 18 6 3.4296 1.6762 -4.7320 19 6 1.4306 2.2847 -5.9553 20 6 0.0606 0.0014 -4.9275 21 6 -0.3395 -1.4732 -5.0071 22 6 0.2471 -2.0930 -6.2769 23 6 1.7726 -1.9797 -6.2420 24 6 2.1727 -0.5051 -6.1624 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -1.7200 1.2949 29 1 3.1264 -0.7996 1.2054 30 1 2.9238 -1.8422 4.7315 31 1 1.6053 -1.7197 -1.2954 32 1 3.1263 -0.7994 -1.2058 33 1 1.9881 0.9875 -2.3967 34 1 3.2144 -0.6175 -3.6870 35 1 1.7696 -1.6573 -3.6813 36 1 3.8913 1.2190 -5.6073 37 1 3.6876 2.7346 -4.6963 38 1 3.7926 1.1829 -3.8303 39 1 0.3427 2.2172 -5.9532 40 1 1.7303 3.3295 -5.8741 41 1 1.8187 1.8669 -6.8843 42 1 -0.3573 0.4430 -4.0228 43 1 -0.3230 0.5293 -5.8006 44 1 -1.4263 -1.5539 -5.0316 45 1 0.0441 -2.0014 -4.1343 46 1 -0.1365 -1.5647 -7.1498 47 1 -0.0383 -3.1434 -6.3340 48 1 2.1904 -2.4208 -7.1469 49 1 2.1562 -2.5079 -5.3692 50 1 1.7890 0.0232 -7.0352 51 1 3.2594 -0.4244 -6.1380 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602508920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:55 Heat of formation + Delta-G solvation = -20.496870 kcal Electronic energy + Delta-G solvation = -23948.335947 eV Core-core repulsion = 20881.446115 eV Total energy + Delta-G solvation = -3066.889832 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.39982 -36.44054 -35.81417 -33.63317 -31.85963 -30.94693 -29.78250 -28.01841 -26.76753 -25.68743 -24.33064 -23.69474 -22.66798 -21.95533 -21.05427 -19.12843 -17.91592 -16.64474 -16.25194 -15.59473 -15.12772 -14.89812 -14.61739 -14.44820 -14.20668 -13.90568 -13.63704 -13.52532 -13.17955 -12.77792 -12.30479 -12.28623 -12.22255 -12.06323 -11.92116 -11.79603 -11.54955 -11.41622 -11.27957 -11.13635 -10.90678 -10.79097 -10.65086 -10.44884 -10.23770 -10.18551 -10.17262 -10.02419 -9.60487 -9.05593 -8.86946 -8.28112 -8.27672 -7.86526 -5.92752 -3.93292 3.35444 3.42909 3.47520 3.80648 4.42720 4.53107 4.57441 4.74989 4.87496 4.97966 5.05584 5.13174 5.19365 5.25197 5.32308 5.41069 5.43183 5.44680 5.48148 5.59506 5.63613 5.70880 5.72418 5.80220 5.81453 5.88770 5.92908 5.97127 6.00996 6.03127 6.06344 6.21571 6.27185 6.40660 6.49310 6.54415 6.67116 6.81006 6.98684 7.04130 7.14092 7.28978 7.31203 7.56327 7.76053 7.90274 7.96391 8.08472 8.53206 9.13612 9.69903 11.18902 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.003420 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.345158 B = 8185.176133 C = 8517.165616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.509 4.509 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.675 5.675 15 C 0.069 3.931 16 C 0.120 3.880 17 N -0.528 5.528 18 C 0.017 3.983 19 C 0.020 3.980 20 C -0.096 4.096 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.147 4.147 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.015 0.985 29 H 0.011 0.989 30 H 0.258 0.742 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.346 0.654 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.086 0.914 43 H 0.052 0.948 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.065 0.935 50 H 0.063 0.937 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 2.400 -23.607 23.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.065 4.065 14 N -0.307 5.307 15 C -0.061 4.061 16 C 0.030 3.970 17 N -0.250 5.250 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.187 4.187 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.165 0.835 34 H 0.038 0.962 35 H 0.095 0.905 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.082 0.918 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.748 2.229 -23.063 23.333 hybrid contribution 1.289 0.259 0.183 1.327 sum -1.459 2.488 -22.880 23.061 Atomic orbital electron populations 1.21563 0.95757 1.00366 1.00110 1.21161 0.95964 0.98830 0.93965 0.92948 1.19127 0.95811 0.95549 0.90589 1.21300 1.34271 1.08212 0.91001 0.92513 1.25021 0.95404 0.95106 0.99075 1.69978 1.39346 1.21314 1.23169 0.86589 0.78218 0.80172 0.83354 1.19728 1.21123 1.21176 1.22133 0.96741 0.97644 0.89978 1.60379 1.63763 1.06053 1.00456 1.22051 0.96031 0.98174 0.89812 1.21089 0.96153 0.86585 0.93202 1.62162 1.10760 1.10085 1.42029 1.22478 0.88044 1.01817 1.00808 1.22443 1.00952 0.98010 0.91367 1.21466 0.93316 0.96116 1.02479 1.21570 1.00116 0.96204 0.97863 1.21556 0.95284 1.00461 0.98385 1.21503 0.96268 0.95959 1.01701 1.22203 1.00587 0.96863 0.99039 0.94363 0.93008 0.93778 0.96653 0.97069 0.93234 0.91970 0.96372 0.83515 0.96210 0.90483 0.95569 0.91546 0.91302 0.90994 0.91779 0.95762 0.89525 0.92944 0.92116 0.91100 0.92491 0.92257 0.92477 0.91601 0.91819 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.52 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.59 7.06 -52.48 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.06 1.13 5.06 -3.82 -0.02 1.11 16 14 N -0.67 -9.95 5.33 -113.77 -0.61 -10.56 16 15 C 0.07 0.87 3.33 -3.82 -0.01 0.85 16 16 C 0.12 1.27 0.21 -131.61 -0.03 1.24 16 17 N -0.53 -5.63 4.06 -235.41 -0.96 -6.59 16 18 C 0.02 0.17 8.64 60.06 0.52 0.69 16 19 C 0.02 0.18 8.81 60.06 0.53 0.71 16 20 C -0.10 -1.03 4.32 -26.73 -0.12 -1.15 16 21 C -0.12 -1.21 5.65 -26.74 -0.15 -1.36 16 22 C -0.12 -1.05 5.92 -26.73 -0.16 -1.20 16 23 C -0.12 -1.04 5.65 -26.73 -0.15 -1.19 16 24 C -0.15 -1.38 4.05 -26.73 -0.11 -1.49 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 27 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.35 5.24 7.60 -39.29 -0.30 4.94 16 34 H 0.02 0.26 6.67 -51.93 -0.35 -0.09 16 35 H 0.08 0.99 4.81 -51.93 -0.25 0.74 16 36 H 0.03 0.24 6.30 -51.93 -0.33 -0.08 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.07 0.77 6.15 -51.93 -0.32 0.45 16 39 H 0.07 0.65 6.27 -51.93 -0.33 0.32 16 40 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 41 H 0.02 0.20 6.35 -51.93 -0.33 -0.12 16 42 H 0.09 1.12 7.74 -51.93 -0.40 0.72 16 43 H 0.05 0.52 6.37 -51.93 -0.33 0.19 16 44 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 45 H 0.07 0.82 6.33 -51.93 -0.33 0.49 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.63 6.54 -51.93 -0.34 0.29 16 50 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 51 H 0.06 0.58 6.42 -51.93 -0.33 0.25 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -29.26 366.56 -10.03 -39.28 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -9.60 Total: 0.51 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.10 Total: -18.51 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.83 Total: -43.79 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.26 -10.03 -39.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602508920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.788 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds