Wall clock time and date at job start Tue Mar 31 2020 06:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 C 1.53004 * 109.47142 * 239.99993 * 2 1 3 5 5 C 1.50695 * 109.46990 * 64.99561 * 4 2 1 6 6 H 1.07998 * 120.00249 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99556 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00021 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47407 * 89.99985 * 9 7 5 11 11 H 1.48501 * 109.47167 * 210.00295 * 9 7 5 12 12 H 1.48507 * 109.47033 * 330.00093 * 9 7 5 13 13 C 1.53002 * 109.46961 * 119.99891 * 2 1 3 14 14 N 1.46897 * 109.47293 * 294.99910 * 13 2 1 15 15 C 1.46900 * 111.00099 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46960 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47012 * 305.40256 * 16 15 14 18 18 C 1.46906 * 111.00030 * 175.85053 * 17 16 15 19 19 C 1.46904 * 111.00182 * 299.80608 * 17 16 15 20 20 C 1.52992 * 109.47702 * 65.40524 * 16 15 14 21 21 C 1.53007 * 109.47271 * 59.99987 * 20 16 15 22 22 C 1.52992 * 109.47125 * 59.99868 * 21 20 16 23 23 C 1.52999 * 109.47482 * 300.00520 * 22 21 20 24 24 C 1.53003 * 109.46889 * 185.40975 * 16 15 14 25 25 H 1.08998 * 109.47234 * 60.00467 * 1 2 3 26 26 H 1.09006 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47369 * 299.99970 * 1 2 3 28 28 H 1.08995 * 109.46867 * 184.99978 * 4 2 1 29 29 H 1.09000 * 109.46771 * 304.99619 * 4 2 1 30 30 H 0.97006 * 119.99312 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46685 * 175.00006 * 13 2 1 32 32 H 1.08994 * 109.47279 * 55.00333 * 13 2 1 33 33 H 1.00899 * 110.99552 * 56.04590 * 14 13 2 34 34 H 1.08995 * 109.47430 * 59.99811 * 15 14 13 35 35 H 1.09000 * 109.46810 * 299.99594 * 15 14 13 36 36 H 1.08995 * 109.46974 * 55.29585 * 18 17 16 37 37 H 1.09000 * 109.46749 * 175.29810 * 18 17 16 38 38 H 1.08999 * 109.46861 * 295.29621 * 18 17 16 39 39 H 1.09000 * 109.46772 * 59.99761 * 19 17 16 40 40 H 1.08996 * 109.47126 * 180.02562 * 19 17 16 41 41 H 1.08998 * 109.46933 * 299.99669 * 19 17 16 42 42 H 1.09001 * 109.47433 * 300.00114 * 20 16 15 43 43 H 1.08995 * 109.47527 * 180.02562 * 20 16 15 44 44 H 1.08999 * 109.46591 * 300.00011 * 21 20 16 45 45 H 1.08994 * 109.47302 * 180.02562 * 21 20 16 46 46 H 1.09004 * 109.47229 * 60.00074 * 22 21 20 47 47 H 1.08998 * 109.47304 * 180.02562 * 22 21 20 48 48 H 1.09001 * 109.47762 * 179.97438 * 23 22 21 49 49 H 1.08999 * 109.46899 * 300.00265 * 23 22 21 50 50 H 1.09004 * 109.46781 * 180.02562 * 24 16 15 51 51 H 1.08994 * 109.47668 * 59.99566 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6764 -1.5188 -3.8510 9 14 1.4995 0.5632 -5.2496 10 1 2.5649 1.5429 -5.5818 11 1 1.3128 -0.3705 -6.3891 12 1 0.2282 1.2845 -4.9873 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7023 0.1910 4.8892 17 7 2.1777 1.5731 4.7423 18 6 1.7053 2.4130 5.8513 19 6 3.6421 1.6176 4.6350 20 6 0.1766 0.1858 5.0027 21 6 -0.3186 -1.2538 5.1557 22 6 0.2888 -1.8707 6.4171 23 6 1.8145 -1.8655 6.3037 24 6 2.3097 -0.4259 6.1508 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.9237 -1.8417 -4.7317 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 0.6528 0.1793 2.4752 34 1 3.2126 -0.7038 3.6401 35 1 1.6920 -1.6245 3.7301 36 1 2.0079 1.9674 6.7989 37 1 2.1392 3.4090 5.7630 38 1 0.6184 2.4856 5.8145 39 1 3.9602 1.0442 3.7643 40 1 3.9673 2.6524 4.5278 41 1 4.0854 1.1893 5.5339 42 1 -0.2561 0.6252 4.1039 43 1 -0.1250 0.7685 5.8730 44 1 -0.0170 -1.8362 4.2850 45 1 -1.4055 -1.2576 5.2361 46 1 -0.0128 -1.2883 7.2878 47 1 -0.0636 -2.8964 6.5259 48 1 2.2473 -2.3045 7.2027 49 1 2.1161 -2.4478 5.4331 50 1 2.0077 0.1563 7.0214 51 1 3.3967 -0.4222 6.0700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602508921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:58 Heat of formation + Delta-G solvation = -18.564414 kcal Electronic energy + Delta-G solvation = -23941.931687 eV Core-core repulsion = 20875.125653 eV Total energy + Delta-G solvation = -3066.806034 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43688 -36.52321 -35.77626 -33.63422 -31.87120 -31.07348 -29.72440 -27.92225 -26.81339 -25.78546 -24.39540 -23.73116 -22.75758 -21.87321 -21.09418 -18.99243 -18.04254 -16.63882 -16.36238 -15.49615 -15.17137 -15.03010 -14.51164 -14.42486 -14.32716 -13.87713 -13.68774 -13.36855 -13.10257 -12.90151 -12.53308 -12.29426 -12.19790 -12.04196 -11.86174 -11.77315 -11.67140 -11.54427 -11.30348 -11.15070 -10.85860 -10.83623 -10.66551 -10.50963 -10.43035 -10.27577 -10.11729 -10.05109 -9.61968 -9.06017 -8.88586 -8.27429 -8.09339 -7.82877 -5.92409 -3.92980 3.36923 3.42914 3.46475 3.88254 4.42802 4.51691 4.53280 4.67733 4.79321 4.90932 5.03571 5.16145 5.19698 5.23681 5.30236 5.37604 5.40841 5.43483 5.50593 5.57869 5.59080 5.72945 5.75593 5.80482 5.84147 5.87530 5.92003 5.92943 5.94931 5.98886 6.07807 6.13234 6.16163 6.26423 6.28379 6.36633 6.58133 6.66827 7.05317 7.15661 7.16898 7.20227 7.27608 7.58195 7.76807 7.87587 7.95592 8.08839 8.53325 9.13649 9.70093 11.19202 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.003407 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.963305 B = 8217.014304 C = 8528.604704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.671 5.671 15 C 0.069 3.931 16 C 0.119 3.881 17 N -0.512 5.512 18 C 0.018 3.982 19 C 0.025 3.975 20 C -0.109 4.109 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.148 4.148 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.032 0.968 28 H 0.014 0.986 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.063 0.937 32 H 0.017 0.983 33 H 0.337 0.663 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.019 0.981 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 1.765 23.689 23.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.303 5.303 15 C -0.061 4.061 16 C 0.028 3.972 17 N -0.234 5.234 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.156 4.156 24 C -0.187 4.187 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.458 2.286 23.065 23.308 hybrid contribution -0.381 -0.645 -0.082 0.754 sum -2.839 1.641 22.983 23.216 Atomic orbital electron populations 1.21724 0.96832 1.00214 1.00214 1.21185 0.94730 1.00099 0.94075 0.91622 1.19107 0.96048 0.95307 0.90489 1.21259 1.34430 1.08191 0.91013 0.92571 1.25020 0.95407 0.95087 0.99065 1.69972 1.39270 1.21273 1.23276 0.86640 0.78935 0.79816 0.82886 1.20748 1.21383 1.19911 1.22121 1.00028 0.94201 0.90077 1.60441 1.19647 1.49754 1.00435 1.22051 1.00084 0.94393 0.89545 1.21048 0.94756 0.88086 0.93261 1.62088 1.10710 1.08519 1.42066 1.22485 1.01220 0.97383 0.91975 1.22407 0.87384 1.02022 1.00483 1.21626 0.94163 0.96511 1.02436 1.21622 0.99991 0.96238 0.98288 1.21521 0.95423 1.00545 0.98029 1.21525 0.95786 0.96492 1.01770 1.22206 1.00726 0.96829 0.98958 0.92025 0.94234 0.94925 0.96777 0.96884 0.93179 0.91899 0.96436 0.84281 0.91600 0.94854 0.95965 0.91836 0.91430 0.90426 0.91917 0.96298 0.90717 0.91907 0.91566 0.91855 0.92295 0.92151 0.92338 0.91542 0.91803 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.15 5.14 -3.82 -0.02 1.13 16 14 N -0.67 -10.10 6.21 -113.78 -0.71 -10.81 16 15 C 0.07 0.87 3.40 -3.82 -0.01 0.86 16 16 C 0.12 1.27 0.22 -131.60 -0.03 1.24 16 17 N -0.51 -5.89 4.55 -235.40 -1.07 -6.96 16 18 C 0.02 0.17 8.78 60.07 0.53 0.70 16 19 C 0.03 0.28 8.81 60.07 0.53 0.81 16 20 C -0.11 -1.10 4.14 -26.73 -0.11 -1.21 16 21 C -0.12 -1.14 5.65 -26.73 -0.15 -1.29 16 22 C -0.12 -0.97 5.92 -26.74 -0.16 -1.13 16 23 C -0.12 -1.02 5.65 -26.73 -0.15 -1.17 16 24 C -0.15 -1.38 4.05 -26.73 -0.11 -1.49 16 25 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.03 0.53 6.68 -51.93 -0.35 0.19 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.34 4.99 5.26 -39.29 -0.21 4.78 16 34 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 35 H 0.03 0.42 4.83 -51.93 -0.25 0.17 16 36 H 0.02 0.20 6.20 -51.93 -0.32 -0.13 16 37 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 38 H 0.07 0.63 6.52 -51.93 -0.34 0.29 16 39 H 0.08 0.99 6.43 -51.93 -0.33 0.66 16 40 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.02 0.19 6.30 -51.93 -0.33 -0.14 16 42 H 0.07 0.85 6.69 -51.93 -0.35 0.50 16 43 H 0.06 0.59 6.45 -51.93 -0.33 0.25 16 44 H 0.07 0.69 6.31 -51.93 -0.33 0.36 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.63 6.55 -51.93 -0.34 0.29 16 50 H 0.06 0.58 6.40 -51.93 -0.33 0.25 16 51 H 0.06 0.63 6.40 -51.93 -0.33 0.30 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -29.61 363.87 -10.10 -39.70 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -9.42 Total: 0.68 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -0.10 Total: -18.46 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -1.04 Total: -44.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.61 -10.10 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602508921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.140 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds