Wall clock time and date at job start Tue Mar 31 2020 06:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46908 * 2 1 4 4 C 1.53004 * 109.47142 * 239.99993 * 2 1 3 5 5 C 1.50695 * 109.46990 * 64.99561 * 4 2 1 6 6 H 1.07998 * 120.00249 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99556 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00021 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47407 * 89.99985 * 9 7 5 11 11 H 1.48501 * 109.47167 * 210.00295 * 9 7 5 12 12 H 1.48507 * 109.47033 * 330.00093 * 9 7 5 13 13 C 1.53002 * 109.46961 * 119.99891 * 2 1 3 14 14 N 1.46897 * 109.47293 * 294.99910 * 13 2 1 15 15 C 1.46900 * 111.00099 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.46960 * 180.02562 * 15 14 13 17 17 N 1.46901 * 109.47012 * 305.40256 * 16 15 14 18 18 C 1.46906 * 111.00030 * 175.85053 * 17 16 15 19 19 C 1.46904 * 111.00182 * 299.80608 * 17 16 15 20 20 C 1.52992 * 109.47702 * 65.40524 * 16 15 14 21 21 C 1.53007 * 109.47271 * 59.99987 * 20 16 15 22 22 C 1.52992 * 109.47125 * 59.99868 * 21 20 16 23 23 C 1.52999 * 109.47482 * 300.00520 * 22 21 20 24 24 C 1.53003 * 109.46889 * 185.40975 * 16 15 14 25 25 H 1.08998 * 109.47234 * 60.00467 * 1 2 3 26 26 H 1.09006 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47369 * 299.99970 * 1 2 3 28 28 H 1.08995 * 109.46867 * 184.99978 * 4 2 1 29 29 H 1.09000 * 109.46771 * 304.99619 * 4 2 1 30 30 H 0.97006 * 119.99312 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.46685 * 175.00006 * 13 2 1 32 32 H 1.08994 * 109.47279 * 55.00333 * 13 2 1 33 33 H 1.00899 * 110.99552 * 56.04590 * 14 13 2 34 34 H 1.08995 * 109.47430 * 59.99811 * 15 14 13 35 35 H 1.09000 * 109.46810 * 299.99594 * 15 14 13 36 36 H 1.08995 * 109.46974 * 55.29585 * 18 17 16 37 37 H 1.09000 * 109.46749 * 175.29810 * 18 17 16 38 38 H 1.08999 * 109.46861 * 295.29621 * 18 17 16 39 39 H 1.09000 * 109.46772 * 59.99761 * 19 17 16 40 40 H 1.08996 * 109.47126 * 180.02562 * 19 17 16 41 41 H 1.08998 * 109.46933 * 299.99669 * 19 17 16 42 42 H 1.09001 * 109.47433 * 300.00114 * 20 16 15 43 43 H 1.08995 * 109.47527 * 180.02562 * 20 16 15 44 44 H 1.08999 * 109.46591 * 300.00011 * 21 20 16 45 45 H 1.08994 * 109.47302 * 180.02562 * 21 20 16 46 46 H 1.09004 * 109.47229 * 60.00074 * 22 21 20 47 47 H 1.08998 * 109.47304 * 180.02562 * 22 21 20 48 48 H 1.09001 * 109.47762 * 179.97438 * 23 22 21 49 49 H 1.08999 * 109.46899 * 300.00265 * 23 22 21 50 50 H 1.09004 * 109.46781 * 180.02562 * 24 16 15 51 51 H 1.08994 * 109.47668 * 59.99566 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6764 -1.5188 -3.8510 9 14 1.4995 0.5632 -5.2496 10 1 2.5649 1.5429 -5.5818 11 1 1.3128 -0.3705 -6.3891 12 1 0.2282 1.2845 -4.9873 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1257 -0.6265 3.6672 16 6 1.7023 0.1910 4.8892 17 7 2.1777 1.5731 4.7423 18 6 1.7053 2.4130 5.8513 19 6 3.6421 1.6176 4.6350 20 6 0.1766 0.1858 5.0027 21 6 -0.3186 -1.2538 5.1557 22 6 0.2888 -1.8707 6.4171 23 6 1.8145 -1.8655 6.3037 24 6 2.3097 -0.4259 6.1508 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2951 30 1 2.9237 -1.8417 -4.7317 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 0.6528 0.1793 2.4752 34 1 3.2126 -0.7038 3.6401 35 1 1.6920 -1.6245 3.7301 36 1 2.0079 1.9674 6.7989 37 1 2.1392 3.4090 5.7630 38 1 0.6184 2.4856 5.8145 39 1 3.9602 1.0442 3.7643 40 1 3.9673 2.6524 4.5278 41 1 4.0854 1.1893 5.5339 42 1 -0.2561 0.6252 4.1039 43 1 -0.1250 0.7685 5.8730 44 1 -0.0170 -1.8362 4.2850 45 1 -1.4055 -1.2576 5.2361 46 1 -0.0128 -1.2883 7.2878 47 1 -0.0636 -2.8964 6.5259 48 1 2.2473 -2.3045 7.2027 49 1 2.1161 -2.4478 5.4331 50 1 2.0077 0.1563 7.0214 51 1 3.3967 -0.4222 6.0700 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602508921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:57 Heat of formation + Delta-G solvation = -36.560256 kcal Electronic energy + Delta-G solvation = -23942.712045 eV Core-core repulsion = 20875.125653 eV Total energy + Delta-G solvation = -3067.586392 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28687 -38.09082 -36.54743 -35.36565 -33.71988 -31.82408 -30.70945 -29.06310 -28.50655 -27.11436 -25.66991 -24.81233 -23.88715 -23.22018 -21.82985 -20.67954 -19.01911 -18.47836 -17.49095 -16.72390 -16.56358 -16.03862 -15.91781 -15.55951 -15.27333 -14.95562 -14.70750 -14.59984 -14.43150 -14.02692 -13.89563 -13.65282 -13.27926 -13.26006 -13.00136 -12.96938 -12.77667 -12.66340 -12.59706 -12.52549 -12.37682 -12.22151 -12.00172 -11.85019 -11.65740 -11.46118 -11.25669 -11.21581 -11.04277 -10.93490 -10.79722 -10.51911 -9.09587 -8.91606 -8.15966 -6.24933 1.40922 1.42208 1.53153 2.43432 3.02931 3.17392 3.40979 3.72469 3.78052 4.01679 4.14453 4.22776 4.28550 4.30200 4.35505 4.43184 4.48017 4.49481 4.52214 4.59742 4.65706 4.71235 4.75340 4.77506 4.82588 4.86910 4.91512 4.94199 5.06811 5.07806 5.13460 5.17085 5.19747 5.22009 5.24704 5.27192 5.36342 5.41117 5.47946 5.50254 5.53882 5.58683 5.83263 5.91731 6.16739 6.31423 6.33291 6.41262 6.66844 6.91021 7.43181 8.96216 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.025683 B = 0.003407 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.963305 B = 8217.014304 C = 8528.604704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.054 0.946 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.079 3.921 14 N -0.668 5.668 15 C 0.071 3.929 16 C 0.123 3.877 17 N -0.531 5.531 18 C 0.020 3.980 19 C 0.029 3.971 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.141 4.141 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.064 0.936 28 H -0.016 1.016 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.050 0.950 32 H 0.017 0.983 33 H 0.341 0.659 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.073 0.927 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.099 2.701 25.177 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.072 0.928 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.050 4.050 14 N -0.301 5.301 15 C -0.058 4.058 16 C 0.033 3.967 17 N -0.254 5.254 18 C -0.128 4.128 19 C -0.119 4.119 20 C -0.144 4.144 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.155 4.155 24 C -0.181 4.181 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.003 0.997 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.162 0.838 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.688 3.232 24.576 25.061 hybrid contribution 0.032 -0.951 -0.510 1.080 sum -3.656 2.281 24.066 24.449 Atomic orbital electron populations 1.21615 0.95058 1.00481 1.00913 1.20972 0.96110 0.98830 0.93195 0.92783 1.18995 0.94053 0.94531 0.92783 1.21645 1.34391 1.08491 0.92091 0.92154 1.25953 0.95273 0.96089 1.02637 1.70109 1.40386 1.22970 1.24234 0.85505 0.79033 0.78373 0.78503 1.19980 1.20861 1.18683 1.21806 0.99108 0.93984 0.90149 1.60371 1.19931 1.49496 1.00295 1.22084 0.99500 0.94926 0.89309 1.20992 0.95367 0.87647 0.92713 1.62066 1.10737 1.09126 1.43461 1.22491 1.01420 0.97205 0.91694 1.22324 0.87636 1.01870 1.00093 1.21599 0.93359 0.97139 1.02290 1.21607 1.00629 0.95496 0.98264 1.21504 0.94854 1.01063 0.97754 1.21525 0.96288 0.95869 1.01849 1.22138 1.00343 0.97278 0.98326 0.93712 0.94163 0.91740 0.99743 0.99282 0.92976 0.93116 0.96534 0.83832 0.92504 0.94479 0.94954 0.91558 0.91019 0.92529 0.91682 0.95113 0.92049 0.90742 0.93023 0.90944 0.91293 0.91485 0.91156 0.92666 0.90893 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.67 8.77 71.98 0.63 -4.04 16 2 C -0.07 -3.08 2.55 -10.79 -0.03 -3.10 16 3 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.03 1.84 4.45 29.85 0.13 1.97 16 5 C -0.53 -30.59 8.41 25.60 0.22 -30.37 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.22 13.29 21.45 0.28 -57.94 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 13 C 0.08 2.86 5.14 86.30 0.44 3.30 16 14 N -0.67 -19.86 6.21 -513.90 -3.19 -23.06 16 15 C 0.07 1.77 3.40 86.30 0.29 2.06 16 16 C 0.12 2.44 0.22 3.53 0.00 2.45 16 17 N -0.53 -11.49 4.55 -898.68 -4.09 -15.58 16 18 C 0.02 0.34 8.78 127.69 1.12 1.46 16 19 C 0.03 0.62 8.81 127.69 1.13 1.75 16 20 C -0.11 -1.92 4.14 30.59 0.13 -1.79 16 21 C -0.12 -2.02 5.65 30.59 0.17 -1.84 16 22 C -0.11 -1.61 5.92 30.59 0.18 -1.43 16 23 C -0.12 -1.80 5.65 30.60 0.17 -1.63 16 24 C -0.14 -2.36 4.05 30.60 0.12 -2.24 16 25 H 0.04 1.83 6.95 -2.39 -0.02 1.81 16 26 H 0.04 1.49 8.14 -2.38 -0.02 1.48 16 27 H 0.06 2.02 6.68 -2.39 -0.02 2.00 16 28 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 31 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.34 9.70 5.26 -89.69 -0.47 9.23 16 34 H 0.06 1.52 6.71 -2.39 -0.02 1.50 16 35 H 0.04 0.91 4.83 -2.39 -0.01 0.90 16 36 H 0.03 0.48 6.20 -2.39 -0.01 0.47 16 37 H 0.07 1.08 8.04 -2.39 -0.02 1.06 16 38 H 0.07 1.16 6.52 -2.39 -0.02 1.14 16 39 H 0.06 1.45 6.43 -2.39 -0.02 1.43 16 40 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 41 H 0.03 0.58 6.30 -2.39 -0.02 0.56 16 42 H 0.06 1.28 6.69 -2.39 -0.02 1.27 16 43 H 0.07 1.19 6.45 -2.39 -0.02 1.17 16 44 H 0.05 1.01 6.31 -2.39 -0.02 0.99 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.05 0.98 6.55 -2.39 -0.02 0.96 16 50 H 0.07 1.12 6.40 -2.39 -0.02 1.10 16 51 H 0.06 1.07 6.40 -2.39 -0.02 1.05 16 Total: -1.00 -64.00 363.87 0.62 -63.39 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.41 Total: 19.02 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 5.18 Total: -33.14 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -7.00 Total: -96.57 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.00 0.62 -63.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602508921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.826 kcal (2) G-P(sol) polarization free energy of solvation -64.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds