Wall clock time and date at job start Tue Mar 31 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46506 * 2 1 4 4 C 1.53002 * 109.47390 * 120.00104 * 2 1 3 5 5 N 1.46894 * 109.46974 * 178.05478 * 4 2 1 6 6 C 1.46851 * 110.99922 * 183.78161 * 5 4 2 7 7 C 1.53042 * 109.52253 * 185.83902 * 6 5 4 8 8 C 1.53119 * 109.27691 * 300.81675 * 7 6 5 9 9 N 1.46902 * 109.51942 * 177.55817 * 8 7 6 10 10 C 1.46899 * 110.99422 * 155.12740 * 9 8 7 11 11 C 1.53003 * 109.46946 * 179.97438 * 10 9 8 12 12 H 1.09009 * 109.46912 * 55.00147 * 11 10 9 13 13 C 1.53003 * 109.47564 * 295.00659 * 11 10 9 14 14 C 1.52994 * 109.47446 * 174.99825 * 11 10 9 15 15 C 1.50696 * 109.47296 * 185.00163 * 14 11 10 16 16 H 1.07995 * 120.00246 * 0.02562 * 15 14 11 17 17 C 1.37883 * 120.00156 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00149 * 180.27757 * 17 15 14 19 19 Si 1.86803 * 119.99737 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47188 * 89.99966 * 19 17 15 21 21 H 1.48501 * 109.47236 * 210.00533 * 19 17 15 22 22 H 1.48501 * 109.46983 * 330.00243 * 19 17 15 23 23 C 1.53120 * 109.21026 * 57.62855 * 8 7 6 24 24 C 1.46847 * 110.99995 * 307.99024 * 5 4 2 25 25 H 1.09001 * 109.47032 * 184.94577 * 1 2 3 26 26 H 1.09001 * 109.47483 * 304.94295 * 1 2 3 27 27 H 1.08999 * 109.47459 * 64.94575 * 1 2 3 28 28 H 1.09001 * 109.47243 * 240.00793 * 2 1 3 29 29 H 1.09002 * 109.46744 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47845 * 300.00114 * 3 2 1 31 31 H 1.09004 * 109.47435 * 60.00386 * 3 2 1 32 32 H 1.08998 * 109.46602 * 58.05228 * 4 2 1 33 33 H 1.08996 * 109.46777 * 298.05465 * 4 2 1 34 34 H 1.09003 * 109.46003 * 65.82020 * 6 5 4 35 35 H 1.09003 * 109.45133 * 305.84632 * 6 5 4 36 36 H 1.08998 * 109.49700 * 180.87845 * 7 6 5 37 37 H 1.08995 * 109.50172 * 60.76124 * 7 6 5 38 38 H 1.08994 * 109.52640 * 297.69051 * 8 7 6 39 39 H 1.00893 * 111.00267 * 279.08404 * 9 8 7 40 40 H 1.08999 * 109.47209 * 60.00920 * 10 9 8 41 41 H 1.09000 * 109.47868 * 300.00072 * 10 9 8 42 42 H 1.09001 * 109.46242 * 299.99707 * 13 11 10 43 43 H 1.08996 * 109.46965 * 59.99268 * 13 11 10 44 44 H 1.08998 * 109.47381 * 179.97438 * 13 11 10 45 45 H 1.09011 * 109.46751 * 65.00472 * 14 11 10 46 46 H 1.08997 * 109.47524 * 305.01179 * 14 11 10 47 47 H 0.97003 * 120.00006 * 179.72231 * 18 17 15 48 48 H 1.09000 * 109.50887 * 62.31732 * 23 8 7 49 49 H 1.09001 * 109.50373 * 182.43396 * 23 8 7 50 50 H 1.09001 * 109.46302 * 294.17894 * 24 5 4 51 51 H 1.09002 * 109.46453 * 54.15991 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5083 -0.7621 1.2259 6 6 4.0317 -1.5260 2.3655 7 6 5.5586 -1.4254 2.3907 8 6 6.1233 -1.9782 1.0792 9 7 7.5849 -1.8306 1.0733 10 6 8.2101 -2.8194 0.1847 11 6 9.7288 -2.6344 0.2044 12 1 10.0877 -2.6854 1.2324 13 6 10.0844 -1.2713 -0.3928 14 6 10.3881 -3.7407 -0.6215 15 6 11.8864 -3.6317 -0.5021 16 1 12.3245 -2.8516 0.1027 17 6 12.6979 -4.5279 -1.1650 18 7 14.0053 -4.4360 -1.0564 19 14 11.9400 -5.8768 -2.2117 20 1 11.7667 -5.3858 -3.6024 21 1 12.8333 -7.0631 -2.2132 22 1 10.6174 -6.2539 -1.6515 23 6 5.5255 -1.1984 -0.0951 24 6 3.9995 -1.3043 -0.0474 25 1 -0.3633 -1.0239 0.0886 26 1 -0.3634 0.5886 0.8424 27 1 -0.3634 0.4352 -0.9309 28 1 1.8934 -0.5137 -0.8901 29 1 3.1299 1.4426 0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6765 1.9564 0.8900 32 1 1.6485 -1.7383 1.2668 33 1 1.7055 -0.1877 2.1388 34 1 3.7381 -2.5712 2.2677 35 1 3.6257 -1.1198 3.2920 36 1 5.9476 -2.0053 3.2276 37 1 5.8527 -0.3818 2.5024 38 1 5.8632 -3.0326 0.9864 39 1 7.8526 -0.8926 0.8157 40 1 7.8407 -2.6798 -0.8312 41 1 7.9617 -3.8240 0.5269 42 1 9.7254 -1.2203 -1.4207 43 1 9.6146 -0.4832 0.1956 44 1 11.1662 -1.1393 -0.3784 45 1 10.0983 -3.6353 -1.6671 46 1 10.0638 -4.7131 -0.2509 47 1 14.5761 -5.0690 -1.5195 48 1 5.8192 -0.1511 -0.0237 49 1 5.8911 -1.6162 -1.0332 50 1 3.7060 -2.3505 -0.1339 51 1 3.5702 -0.7372 -0.8734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:43 Heat of formation + Delta-G solvation = -28.852065 kcal Electronic energy + Delta-G solvation = -22902.120316 eV Core-core repulsion = 19834.868176 eV Total energy + Delta-G solvation = -3067.252140 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.71462 -37.38812 -35.77356 -33.88142 -32.18393 -30.98390 -30.33739 -27.45527 -27.40979 -26.20530 -24.84782 -23.44872 -22.67877 -21.59156 -20.25764 -19.77559 -18.91413 -16.83076 -16.52304 -15.74706 -15.25189 -15.03740 -14.92355 -14.42043 -14.16907 -14.06863 -13.77273 -13.48403 -13.12881 -12.94684 -12.65557 -12.54690 -12.42507 -12.26949 -12.13665 -11.99723 -11.62190 -11.49135 -11.30320 -11.26044 -11.06959 -11.01972 -10.89596 -10.73188 -10.61475 -10.44473 -10.33080 -9.77679 -9.70714 -9.38082 -9.02937 -8.52034 -8.49637 -8.10196 -5.99852 -3.96509 3.32498 3.40017 3.43876 3.63883 4.31926 4.41119 4.48655 4.59307 4.67689 4.81572 4.85015 5.01276 5.06688 5.18715 5.23853 5.29665 5.33679 5.34478 5.43242 5.44348 5.51467 5.55031 5.60514 5.66365 5.68472 5.69825 5.72120 5.79573 5.87686 5.93219 5.98177 6.00875 6.11908 6.15055 6.19757 6.27422 6.41548 6.49719 6.81210 6.86696 6.89861 6.99902 7.09670 7.30835 7.36012 7.52105 7.67429 7.85365 8.59987 9.06150 9.63154 11.13599 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032673 B = 0.002704 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.770358 B =10353.700842 C =10546.453129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.139 4.139 4 C 0.060 3.940 5 N -0.535 5.535 6 C 0.057 3.943 7 C -0.102 4.102 8 C 0.086 3.914 9 N -0.684 5.684 10 C 0.063 3.937 11 C -0.076 4.076 12 H 0.071 0.929 13 C -0.135 4.135 14 C -0.008 4.008 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.146 4.146 24 C 0.055 3.945 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.340 0.660 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.034 0.966 44 H 0.067 0.933 45 H 0.009 0.991 46 H 0.014 0.986 47 H 0.262 0.738 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.030 0.970 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.136 8.973 3.577 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.068 4.068 5 N -0.259 5.259 6 C -0.071 4.071 7 C -0.141 4.141 8 C -0.025 4.025 9 N -0.314 5.314 10 C -0.066 4.066 11 C -0.094 4.094 12 H 0.089 0.911 13 C -0.193 4.193 14 C -0.046 4.046 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.185 4.185 24 C -0.073 4.073 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.160 0.840 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.027 0.973 46 H 0.032 0.968 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.048 0.952 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.682 8.978 4.139 28.455 hybrid contribution -0.805 -1.315 -1.636 2.248 sum -27.488 7.663 2.502 28.645 Atomic orbital electron populations 1.21820 0.95141 1.01593 1.01910 1.21257 0.95328 0.97424 0.97914 1.21731 1.02256 0.94730 1.00889 1.22170 0.87354 0.98524 0.98716 1.61971 1.07852 1.53483 1.02630 1.22101 0.95974 0.95409 0.93651 1.21542 0.92729 1.02206 0.97582 1.21610 0.88083 0.98901 0.93860 1.60638 1.06132 1.08697 1.55967 1.22173 0.96010 0.95209 0.93216 1.21029 0.91293 0.96283 1.00834 0.91065 1.21745 1.02671 0.95985 0.98853 1.19600 0.96773 0.93724 0.94534 1.21140 0.89003 1.15063 1.29766 0.90811 1.25037 0.94716 0.97486 0.96420 1.69916 1.03110 1.37509 1.43936 0.86804 0.79555 0.82008 0.81037 1.20461 1.21494 1.19106 1.22340 0.94870 1.01718 0.99581 1.22121 0.95539 0.97500 0.92184 0.92905 0.92596 0.92531 0.91027 0.91417 0.93493 0.92976 0.95217 0.90747 0.95115 0.90797 0.90861 0.91102 0.91211 0.84029 0.95936 0.91742 0.94145 0.94679 0.91383 0.97318 0.96755 0.92858 0.90977 0.91650 0.95211 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.10 -0.72 2.43 -90.62 -0.22 -0.94 16 3 C -0.14 -1.03 8.98 37.16 0.33 -0.70 16 4 C 0.06 0.47 4.55 -3.83 -0.02 0.46 16 5 N -0.53 -4.92 4.08 -234.66 -0.96 -5.88 16 6 C 0.06 0.53 5.46 -3.83 -0.02 0.51 16 7 C -0.10 -1.08 5.71 -26.65 -0.15 -1.23 16 8 C 0.09 1.02 2.53 -67.59 -0.17 0.85 16 9 N -0.68 -9.66 6.25 -106.59 -0.67 -10.32 16 10 C 0.06 1.03 4.94 -3.82 -0.02 1.01 16 11 C -0.08 -1.50 2.54 -90.62 -0.23 -1.73 16 12 H 0.07 1.51 8.14 -51.92 -0.42 1.08 16 13 C -0.14 -2.50 8.77 37.16 0.33 -2.17 16 14 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 15 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 16 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 19 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 23 C -0.15 -1.56 5.35 -26.64 -0.14 -1.71 16 24 C 0.05 0.52 4.96 -3.83 -0.02 0.51 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.55 6.07 -51.93 -0.32 0.23 16 29 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.89 7.80 -51.93 -0.41 0.48 16 39 H 0.34 4.66 6.70 -39.30 -0.26 4.39 16 40 H 0.02 0.36 7.50 -51.93 -0.39 -0.03 16 41 H 0.06 1.09 8.06 -51.93 -0.42 0.67 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 44 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 45 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16 46 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 49 H 0.06 0.74 7.53 -51.93 -0.39 0.35 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 51 H 0.08 0.70 5.70 -51.93 -0.30 0.41 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -29.52 378.86 -10.54 -40.06 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -10.23 Total: -0.45 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.50 Total: -19.07 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.85 Total: -43.58 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.52 -10.54 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.207 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds