Wall clock time and date at job start Tue Mar 31 2020 06:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46478 * 2 1 4 4 C 1.52994 * 109.47135 * 119.99632 * 2 1 3 5 5 H 1.09003 * 109.47639 * 294.16568 * 4 2 1 6 6 C 1.53002 * 109.47257 * 174.16809 * 4 2 1 7 7 N 1.46900 * 109.47265 * 69.03084 * 6 4 2 8 8 C 1.46893 * 111.00286 * 175.50907 * 7 6 4 9 9 C 1.53000 * 109.47488 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46624 * 55.00274 * 9 8 7 11 11 C 1.52998 * 109.47100 * 295.00345 * 9 8 7 12 12 C 1.52994 * 109.47444 * 174.99928 * 9 8 7 13 13 C 1.50697 * 109.47233 * 185.00056 * 12 9 8 14 14 H 1.08001 * 119.99904 * 0.02562 * 13 12 9 15 15 C 1.37885 * 119.99825 * 179.97438 * 13 12 9 16 16 N 1.31507 * 119.99912 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99622 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47069 * 90.00419 * 17 15 13 19 19 H 1.48504 * 109.47018 * 210.00238 * 17 15 13 20 20 H 1.48502 * 109.47441 * 330.00465 * 17 15 13 21 21 N 1.46901 * 109.47071 * 54.16868 * 4 2 1 22 22 C 1.48531 * 110.99888 * 69.71706 * 21 4 2 23 23 C 1.54942 * 103.22872 * 159.72326 * 22 21 4 24 24 C 1.54596 * 102.91639 * 322.58495 * 23 22 21 25 25 C 1.47900 * 110.99872 * 187.10969 * 21 4 2 26 26 H 1.08999 * 109.47610 * 300.00045 * 1 2 3 27 27 H 1.09002 * 109.47223 * 60.00620 * 1 2 3 28 28 H 1.09009 * 109.46792 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47221 * 240.00576 * 2 1 3 30 30 H 1.09000 * 109.46903 * 187.90406 * 3 2 1 31 31 H 1.09001 * 109.47512 * 307.89722 * 3 2 1 32 32 H 1.09003 * 109.47183 * 67.90594 * 3 2 1 33 33 H 1.09006 * 109.46945 * 309.03457 * 6 4 2 34 34 H 1.09000 * 109.47230 * 189.03068 * 6 4 2 35 35 H 1.00897 * 110.99707 * 51.55001 * 7 6 4 36 36 H 1.09000 * 109.47338 * 300.00520 * 8 7 6 37 37 H 1.09002 * 109.47012 * 60.00182 * 8 7 6 38 38 H 1.09000 * 109.47284 * 179.97438 * 11 9 8 39 39 H 1.09000 * 109.47324 * 299.99500 * 11 9 8 40 40 H 1.09001 * 109.47514 * 59.99768 * 11 9 8 41 41 H 1.09004 * 109.47104 * 305.00258 * 12 9 8 42 42 H 1.09005 * 109.47006 * 65.00317 * 12 9 8 43 43 H 0.97005 * 120.00142 * 180.02562 * 16 15 13 44 44 H 1.09007 * 110.66718 * 278.15145 * 22 21 4 45 45 H 1.08990 * 110.67023 * 41.28555 * 22 21 4 46 46 H 1.08997 * 110.72567 * 204.22717 * 23 22 21 47 47 H 1.08998 * 110.72323 * 80.93709 * 23 22 21 48 48 H 1.09004 * 110.30377 * 263.03952 * 24 23 22 49 49 H 1.08999 * 110.30980 * 140.87760 * 24 23 22 50 50 H 1.09002 * 109.92235 * 333.51009 * 25 21 4 51 51 H 1.09005 * 109.91671 * 94.80387 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.7645 -0.1505 2.1362 6 6 3.5630 -0.8493 1.1781 7 7 4.1735 0.4789 1.3233 8 6 5.6387 0.3829 1.3666 9 6 6.2373 1.7829 1.5173 10 1 5.8075 2.2694 2.3930 11 6 5.9225 2.6093 0.2688 12 6 7.7538 1.6735 1.6876 13 6 8.3287 3.0399 1.9585 14 1 7.6775 3.9003 2.0050 15 6 9.6860 3.1916 2.1480 16 7 10.4789 2.1439 2.0919 17 14 10.3987 4.8855 2.4831 18 1 10.4180 5.1336 3.9472 19 1 11.7834 4.9540 1.9511 20 1 9.5612 5.9155 1.8175 21 7 1.4388 -2.0595 1.3217 22 6 1.9757 -2.9427 0.2550 23 6 1.6701 -4.3659 0.7858 24 6 1.9141 -4.2275 2.3061 25 6 1.7739 -2.7225 2.6006 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 3.1207 1.4459 -0.1413 31 1 1.5658 1.9956 -0.8109 32 1 1.7965 1.9140 0.9522 33 1 3.8471 -1.2767 0.2164 34 1 3.9108 -1.4988 1.9814 35 1 3.8178 0.9530 2.1398 36 1 5.9375 -0.2336 2.2143 37 1 6.0007 -0.0691 0.4431 38 1 6.3486 3.6068 0.3763 39 1 6.3523 2.1228 -0.6068 40 1 4.8421 2.6872 0.1475 41 1 7.9787 1.0122 2.5244 42 1 8.1935 1.2686 0.7761 43 1 11.4337 2.2505 2.2256 44 1 1.4588 -2.7648 -0.6881 45 1 3.0497 -2.7975 0.1397 46 1 2.3534 -5.0950 0.3503 47 1 0.6341 -4.6384 0.5847 48 1 2.9167 -4.5711 2.5611 49 1 1.1666 -4.7932 2.8623 50 1 2.7148 -2.3305 2.9868 51 1 0.9754 -2.5586 3.3243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509959.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:51 Heat of formation + Delta-G solvation = -17.935627 kcal Electronic energy + Delta-G solvation = -23494.938505 eV Core-core repulsion = 20428.159737 eV Total energy + Delta-G solvation = -3066.778768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99226 -37.03600 -35.63925 -33.53713 -31.98400 -31.22231 -29.08988 -27.70833 -26.82592 -26.27378 -24.77470 -23.27875 -22.24548 -21.41718 -20.78616 -19.53611 -18.79102 -16.59938 -16.27267 -16.05760 -15.34405 -15.03479 -14.58175 -14.29165 -14.13212 -13.91185 -13.64610 -13.18940 -13.03756 -12.50948 -12.44384 -12.22587 -12.11957 -11.99303 -11.73584 -11.55704 -11.52537 -11.42234 -11.32348 -11.27300 -10.90660 -10.80138 -10.67798 -10.62897 -10.57169 -10.35181 -10.24796 -10.18880 -9.69245 -9.16184 -8.97656 -8.44269 -8.33043 -7.99291 -5.97784 -3.98871 3.32758 3.39156 3.42635 3.79869 4.35326 4.44413 4.47883 4.58364 4.71897 4.75678 5.05076 5.09979 5.18643 5.30501 5.37904 5.38621 5.44638 5.47576 5.57787 5.61632 5.67585 5.69304 5.76914 5.79717 5.81162 5.88074 5.90965 5.99278 6.01696 6.08928 6.14819 6.24889 6.33376 6.40330 6.49256 6.54102 6.64531 6.77856 6.87869 6.91130 7.03107 7.20187 7.20564 7.34941 7.61072 7.69545 7.85180 8.02441 8.46509 9.07600 9.64547 11.13776 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024691 B = 0.003218 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.747752 B = 8698.282103 C = 9465.434483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.155 4.155 4 C 0.081 3.919 5 H 0.079 0.921 6 C 0.026 3.974 7 N -0.673 5.673 8 C 0.062 3.938 9 C -0.081 4.081 10 H 0.053 0.947 11 C -0.123 4.123 12 C 0.027 3.973 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.890 3.110 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.505 5.505 22 C 0.026 3.974 23 C -0.124 4.124 24 C -0.131 4.131 25 C 0.028 3.972 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.039 0.961 40 H 0.043 0.957 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.048 0.952 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.023 -10.788 -2.509 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.212 4.212 4 C -0.028 4.028 5 H 0.097 0.903 6 C -0.105 4.105 7 N -0.304 5.304 8 C -0.067 4.067 9 C -0.100 4.100 10 H 0.071 0.929 11 C -0.181 4.181 12 C -0.010 4.010 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 N -0.228 5.228 22 C -0.102 4.102 23 C -0.162 4.162 24 C -0.169 4.169 25 C -0.100 4.100 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.154 0.846 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.429 -10.634 -3.219 23.255 hybrid contribution 1.641 0.370 1.302 2.127 sum -18.787 -10.264 -1.917 21.494 Atomic orbital electron populations 1.21740 0.95437 1.01847 1.00456 1.20936 0.95330 0.96713 0.96093 1.22110 1.04913 0.93930 1.00274 1.21954 0.91179 0.90017 0.99675 0.90256 1.22688 0.95296 0.91668 1.00820 1.60785 1.06635 1.17302 1.45658 1.22185 0.85828 0.98882 0.99798 1.21183 0.98849 0.92331 0.97660 0.92881 1.21611 0.99227 1.00155 0.97060 1.19115 0.88081 0.97007 0.96803 1.21240 0.92166 0.93831 1.47818 0.92556 1.25025 0.97366 0.96521 0.95666 1.69965 1.04119 1.29096 1.50539 0.86631 0.78392 0.84820 0.78384 1.20775 1.21304 1.19855 1.65054 1.53864 1.01730 1.02181 1.23341 0.98929 0.91903 0.96011 1.22475 1.01941 0.96622 0.95125 1.22380 1.01780 0.96002 0.96722 1.22912 1.00259 0.93677 0.93103 0.93425 0.93852 0.91997 0.92045 0.88108 0.94292 0.93651 0.90860 0.95541 0.84614 0.96017 0.91697 0.92809 0.94232 0.93759 0.97064 0.96619 0.93113 0.90089 0.92791 0.91265 0.90957 0.91649 0.91213 0.93324 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.96 37.16 0.33 -1.04 16 2 C -0.07 -0.77 2.30 -90.62 -0.21 -0.98 16 3 C -0.15 -1.79 8.24 37.16 0.31 -1.48 16 4 C 0.08 0.86 1.58 -67.71 -0.11 0.75 16 5 H 0.08 0.89 8.02 -51.93 -0.42 0.48 16 6 C 0.03 0.31 4.00 -3.82 -0.02 0.30 16 7 N -0.67 -9.12 2.80 -113.78 -0.32 -9.44 16 8 C 0.06 1.04 5.07 -3.83 -0.02 1.02 16 9 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 10 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 11 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 12 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 13 C -0.51 -14.36 8.41 -34.44 -0.29 -14.65 16 14 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 N -0.51 -5.03 4.24 -222.50 -0.94 -5.98 16 22 C 0.03 0.24 5.56 -1.90 -0.01 0.23 16 23 C -0.12 -0.99 7.06 -24.87 -0.18 -1.16 16 24 C -0.13 -1.07 6.93 -25.37 -0.18 -1.24 16 25 C 0.03 0.27 6.43 -2.76 -0.02 0.25 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.63 7.45 -51.92 -0.39 0.25 16 29 H 0.06 0.69 7.49 -51.93 -0.39 0.30 16 30 H 0.10 1.34 4.92 -51.93 -0.26 1.09 16 31 H 0.04 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 33 H 0.07 0.92 6.45 -51.93 -0.33 0.59 16 34 H 0.03 0.34 6.17 -51.93 -0.32 0.02 16 35 H 0.34 4.43 8.61 -39.29 -0.34 4.10 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.74 6.78 -51.93 -0.35 0.39 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 0.74 7.91 -51.92 -0.41 0.33 16 45 H 0.05 0.54 5.52 -51.93 -0.29 0.26 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.50 5.93 -51.93 -0.31 0.19 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -28.61 376.66 -10.37 -38.98 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -10.00 Total: 0.21 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.50 Total: -19.83 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: -0.52 Total: -41.78 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.61 -10.37 -38.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509959.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.040 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds