Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53008 * 109.47038 * 2 1 4 4 C 1.52997 * 109.46997 * 119.99722 * 2 1 3 5 5 H 1.08995 * 109.47664 * 293.84016 * 4 2 1 6 6 C 1.53000 * 109.47035 * 173.84128 * 4 2 1 7 7 N 1.46896 * 109.47504 * 67.86020 * 6 4 2 8 8 C 1.46900 * 111.00012 * 175.28672 * 7 6 4 9 9 C 1.53003 * 109.46683 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47806 * 305.00243 * 9 8 7 11 11 C 1.52999 * 109.46903 * 65.00534 * 9 8 7 12 12 C 1.53000 * 109.47023 * 185.00066 * 9 8 7 13 13 C 1.50696 * 109.47300 * 175.00316 * 12 9 8 14 14 H 1.07998 * 120.00394 * 0.02562 * 13 12 9 15 15 C 1.37883 * 119.99953 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00132 * 359.72760 * 15 13 12 17 17 Si 1.86801 * 119.99897 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47217 * 179.72831 * 17 15 13 19 19 H 1.48504 * 109.46828 * 299.72655 * 17 15 13 20 20 H 1.48494 * 109.47376 * 59.72245 * 17 15 13 21 21 N 1.46902 * 109.47280 * 53.84092 * 4 2 1 22 22 C 1.48536 * 110.99631 * 69.59183 * 21 4 2 23 23 C 1.54937 * 103.22405 * 159.72454 * 22 21 4 24 24 C 1.54603 * 102.92109 * 322.58549 * 23 22 21 25 25 C 1.47901 * 111.00064 * 186.98955 * 21 4 2 26 26 H 1.08999 * 109.46969 * 300.00177 * 1 2 3 27 27 H 1.09003 * 109.46880 * 59.99628 * 1 2 3 28 28 H 1.08991 * 109.46671 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47248 * 240.00247 * 2 1 3 30 30 H 1.08995 * 109.46824 * 187.87174 * 3 2 1 31 31 H 1.08998 * 109.47056 * 307.87615 * 3 2 1 32 32 H 1.09006 * 109.46918 * 67.87459 * 3 2 1 33 33 H 1.09005 * 109.46753 * 307.85969 * 6 4 2 34 34 H 1.09001 * 109.47574 * 187.86847 * 6 4 2 35 35 H 1.00897 * 110.99776 * 51.33406 * 7 6 4 36 36 H 1.08999 * 109.46957 * 60.00424 * 8 7 6 37 37 H 1.08995 * 109.47417 * 299.99807 * 8 7 6 38 38 H 1.09004 * 109.47337 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47465 * 299.99641 * 11 9 8 40 40 H 1.09000 * 109.47689 * 59.99740 * 11 9 8 41 41 H 1.09004 * 109.47021 * 54.99999 * 12 9 8 42 42 H 1.08999 * 109.47262 * 295.00355 * 12 9 8 43 43 H 0.96999 * 120.00275 * 0.26806 * 16 15 13 44 44 H 1.09001 * 110.67126 * 278.15383 * 22 21 4 45 45 H 1.08991 * 110.67068 * 41.29247 * 22 21 4 46 46 H 1.09000 * 110.72548 * 204.22755 * 23 22 21 47 47 H 1.09007 * 110.72752 * 80.94304 * 23 22 21 48 48 H 1.08994 * 110.30824 * 263.04142 * 24 23 22 49 49 H 1.08998 * 110.30532 * 140.87459 * 24 23 22 50 50 H 1.08994 * 109.91825 * 333.51009 * 25 21 4 51 51 H 1.09004 * 109.91129 * 94.80511 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7696 -0.1477 2.1358 6 6 3.5622 -0.8566 1.1743 7 7 4.1782 0.4722 1.2872 8 6 5.6431 0.3712 1.3315 9 6 6.2474 1.7720 1.4482 10 1 5.8792 2.3958 0.6337 11 6 5.8437 2.3915 2.7877 12 6 7.7724 1.6777 1.3689 13 6 8.3617 3.0647 1.3604 14 1 7.7135 3.9272 1.4073 15 6 9.7287 3.2325 1.2938 16 7 10.5185 2.1822 1.2432 17 14 10.4592 4.9518 1.2840 18 1 11.9397 4.8601 1.2142 19 1 9.9532 5.6978 0.1038 20 1 10.0653 5.6641 2.5259 21 7 1.4328 -2.0566 1.3260 22 6 1.9605 -2.9434 0.2576 23 6 1.6506 -4.3645 0.7913 24 6 1.9023 -4.2258 2.3104 25 6 1.7706 -2.7199 2.6040 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1209 1.4458 -0.1407 31 1 1.5663 1.9954 -0.8112 32 1 1.7962 1.9141 0.9521 33 1 3.8404 -1.3063 0.2211 34 1 3.9114 -1.4895 1.9902 35 1 3.8254 0.9670 2.0925 36 1 6.0023 -0.1041 0.4187 37 1 5.9403 -0.2260 2.1934 38 1 6.2746 3.3893 2.8711 39 1 4.7573 2.4587 2.8442 40 1 6.2120 1.7679 3.6022 41 1 8.0572 1.1563 0.4551 42 1 8.1479 1.1288 2.2325 43 1 10.1392 1.2895 1.2487 44 1 1.4402 -2.7640 -0.6833 45 1 3.0347 -2.8035 0.1371 46 1 2.3284 -5.0973 0.3534 47 1 0.6123 -4.6324 0.5952 48 1 2.9043 -4.5739 2.5611 49 1 1.1546 -4.7873 2.8705 50 1 2.7151 -2.3320 2.9854 51 1 0.9762 -2.5514 3.3311 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509960.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = -20.841151 kcal Electronic energy + Delta-G solvation = -23516.393484 eV Core-core repulsion = 20449.488723 eV Total energy + Delta-G solvation = -3066.904761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.03952 -37.17751 -35.77186 -33.71986 -32.02601 -31.24488 -29.12810 -27.62759 -26.61457 -26.39865 -24.82892 -23.31194 -22.28324 -21.46437 -20.81295 -19.56827 -18.97839 -16.81776 -16.50308 -16.16701 -15.55612 -15.08772 -14.34312 -14.32394 -14.09359 -13.72944 -13.61128 -13.31588 -13.23679 -12.80094 -12.57209 -12.27977 -12.08623 -12.07362 -11.78062 -11.67922 -11.56875 -11.49444 -11.37803 -11.30786 -11.04444 -10.77316 -10.69223 -10.67400 -10.59950 -10.36915 -10.23720 -10.07608 -9.84819 -9.47166 -8.56683 -8.40737 -8.29572 -8.07223 -6.32231 -4.00350 3.45418 3.47378 3.65872 3.75662 4.30662 4.40557 4.51230 4.58705 4.67681 4.71988 5.00291 5.06101 5.14516 5.26631 5.34106 5.39927 5.43552 5.44368 5.54142 5.58220 5.62474 5.64717 5.68406 5.75042 5.77151 5.79460 5.85439 5.93133 5.96060 5.98138 6.06091 6.14130 6.22276 6.31093 6.35222 6.44558 6.45933 6.73874 6.76026 6.85112 6.89585 7.00774 7.03083 7.25024 7.42173 7.51897 7.61691 8.26940 8.50593 8.92725 9.71159 11.08152 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.003204 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.350307 B = 8738.007520 C = 9366.321358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.072 4.072 3 C -0.155 4.155 4 C 0.081 3.919 5 H 0.079 0.921 6 C 0.025 3.975 7 N -0.674 5.674 8 C 0.061 3.939 9 C -0.076 4.076 10 H 0.067 0.933 11 C -0.133 4.133 12 C 0.015 3.985 13 C -0.594 4.594 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.916 5.916 17 Si 1.067 2.933 18 H -0.283 1.283 19 H -0.288 1.288 20 H -0.289 1.289 21 N -0.505 5.505 22 C 0.025 3.975 23 C -0.123 4.123 24 C -0.131 4.131 25 C 0.028 3.972 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.338 0.662 36 H 0.065 0.935 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.005 0.995 42 H 0.004 0.996 43 H 0.267 0.733 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.048 0.952 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.593 -10.683 0.341 23.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 C -0.213 4.213 4 C -0.028 4.028 5 H 0.097 0.903 6 C -0.106 4.106 7 N -0.306 5.306 8 C -0.068 4.068 9 C -0.095 4.095 10 H 0.086 0.914 11 C -0.190 4.190 12 C -0.022 4.022 13 C -0.632 4.632 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.552 5.552 17 Si 0.896 3.104 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.215 1.215 21 N -0.228 5.228 22 C -0.102 4.102 23 C -0.162 4.162 24 C -0.169 4.169 25 C -0.100 4.100 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.045 0.955 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.022 0.978 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.066 0.934 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.755 -9.655 -0.422 21.993 hybrid contribution -0.386 -1.350 1.149 1.814 sum -20.142 -11.005 0.726 22.964 Atomic orbital electron populations 1.21739 0.95363 1.01878 1.00489 1.20940 0.95383 0.96691 0.96081 1.22103 1.04924 0.93957 1.00280 1.21952 0.91038 0.90141 0.99698 0.90300 1.22700 0.95376 0.91662 1.00817 1.60828 1.06416 1.16377 1.46997 1.22183 0.86122 0.98809 0.99647 1.21070 0.97944 0.93121 0.97359 0.91437 1.21725 0.98082 1.02039 0.97168 1.19231 0.89675 0.97702 0.95628 1.22032 0.94066 0.92205 1.54918 0.93191 1.25827 0.94116 1.05153 0.93987 1.70780 1.38195 0.99240 1.47031 0.83570 0.76169 0.74227 0.76482 1.20863 1.21454 1.21518 1.65057 1.53830 1.01731 1.02149 1.23349 0.98981 0.91887 0.96004 1.22477 1.01976 0.96609 0.95093 1.22379 1.01775 0.95956 0.96766 1.22914 1.00209 0.93702 0.93139 0.93427 0.93794 0.91961 0.91979 0.88199 0.94165 0.93726 0.90780 0.95541 0.84314 0.91697 0.96119 0.91722 0.94788 0.94239 0.97678 0.97798 0.92220 0.90028 0.92809 0.91244 0.90910 0.91671 0.91171 0.93401 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.96 37.16 0.33 -1.05 16 2 C -0.07 -0.78 2.29 -90.61 -0.21 -0.99 16 3 C -0.15 -1.84 8.24 37.16 0.31 -1.53 16 4 C 0.08 0.87 1.58 -67.71 -0.11 0.76 16 5 H 0.08 0.89 8.03 -51.93 -0.42 0.48 16 6 C 0.03 0.31 4.06 -3.83 -0.02 0.29 16 7 N -0.67 -9.35 3.28 -113.78 -0.37 -9.72 16 8 C 0.06 1.04 5.14 -3.82 -0.02 1.02 16 9 C -0.08 -1.54 2.55 -90.62 -0.23 -1.77 16 10 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 11 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 12 C 0.02 0.39 3.76 -27.88 -0.10 0.28 16 13 C -0.59 -16.85 8.41 -34.44 -0.29 -17.13 16 14 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 15 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 16 N -0.92 -28.37 13.65 55.43 0.76 -27.61 16 17 Si 1.07 25.54 29.90 -169.99 -5.08 20.46 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 N -0.50 -5.03 4.22 -222.51 -0.94 -5.97 16 22 C 0.03 0.24 5.56 -1.90 -0.01 0.23 16 23 C -0.12 -0.98 7.06 -24.87 -0.18 -1.16 16 24 C -0.13 -1.05 6.93 -25.37 -0.18 -1.23 16 25 C 0.03 0.26 6.44 -2.76 -0.02 0.25 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 30 H 0.10 1.38 5.82 -51.93 -0.30 1.08 16 31 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.04 0.52 8.11 -51.93 -0.42 0.10 16 33 H 0.07 0.95 6.39 -51.93 -0.33 0.61 16 34 H 0.03 0.34 6.18 -51.93 -0.32 0.02 16 35 H 0.34 4.54 6.86 -39.29 -0.27 4.27 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 1.32 6.95 -51.93 -0.36 0.96 16 39 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 42 H 0.00 0.10 8.00 -51.93 -0.42 -0.31 16 43 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 44 H 0.08 0.75 7.92 -51.93 -0.41 0.33 16 45 H 0.05 0.55 5.50 -51.93 -0.29 0.26 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.05 0.49 5.92 -51.93 -0.31 0.18 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -29.32 374.87 -10.39 -39.71 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -9.92 Total: 1.41 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -0.49 Total: -23.93 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.56 Total: -43.30 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.32 -10.39 -39.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509960.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.871 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds