Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47552 * 2 1 4 4 C 1.52999 * 109.47569 * 120.00559 * 2 1 3 5 5 H 1.08999 * 109.47379 * 181.49020 * 4 2 1 6 6 C 1.53000 * 109.46771 * 301.48825 * 4 2 1 7 7 N 1.46904 * 109.47191 * 175.00021 * 6 4 2 8 8 C 1.46894 * 111.00061 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47151 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.47021 * 55.00033 * 9 8 7 11 11 C 1.53002 * 109.47459 * 295.00348 * 9 8 7 12 12 C 1.52998 * 109.47243 * 174.99727 * 9 8 7 13 13 C 1.50707 * 109.46964 * 185.00357 * 12 9 8 14 14 H 1.07995 * 119.99848 * 359.97438 * 13 12 9 15 15 C 1.37873 * 119.99700 * 180.02562 * 13 12 9 16 16 N 1.31518 * 120.00099 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99906 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46868 * 60.00288 * 17 15 13 19 19 H 1.48503 * 109.47220 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47359 * 300.00080 * 17 15 13 21 21 N 1.46901 * 109.47062 * 61.48800 * 4 2 1 22 22 C 1.48532 * 111.00201 * 51.31748 * 21 4 2 23 23 C 1.54933 * 103.22608 * 159.72383 * 22 21 4 24 24 C 1.54598 * 102.92052 * 322.58163 * 23 22 21 25 25 C 1.47900 * 110.99738 * 168.71497 * 21 4 2 26 26 H 1.09004 * 109.46364 * 299.99584 * 1 2 3 27 27 H 1.08997 * 109.47558 * 59.99328 * 1 2 3 28 28 H 1.08999 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46364 * 240.00416 * 2 1 3 30 30 H 1.08997 * 109.47821 * 184.46932 * 3 2 1 31 31 H 1.09004 * 109.47372 * 304.46930 * 3 2 1 32 32 H 1.08998 * 109.47248 * 64.46414 * 3 2 1 33 33 H 1.08997 * 109.47505 * 55.00176 * 6 4 2 34 34 H 1.08997 * 109.47102 * 294.99774 * 6 4 2 35 35 H 1.00893 * 110.99906 * 56.04090 * 7 6 4 36 36 H 1.09001 * 109.47204 * 60.00271 * 8 7 6 37 37 H 1.09003 * 109.47181 * 299.99801 * 8 7 6 38 38 H 1.08992 * 109.47048 * 179.97438 * 11 9 8 39 39 H 1.08995 * 109.47189 * 59.99333 * 11 9 8 40 40 H 1.09001 * 109.46390 * 299.99814 * 11 9 8 41 41 H 1.08996 * 109.47207 * 304.99841 * 12 9 8 42 42 H 1.09002 * 109.46636 * 65.00512 * 12 9 8 43 43 H 0.97004 * 119.99556 * 179.97438 * 16 15 13 44 44 H 1.09004 * 110.66199 * 278.15803 * 22 21 4 45 45 H 1.08995 * 110.66780 * 41.28414 * 22 21 4 46 46 H 1.09004 * 110.72239 * 204.23332 * 23 22 21 47 47 H 1.08998 * 110.88047 * 81.01550 * 23 22 21 48 48 H 1.09000 * 110.30984 * 263.04386 * 24 23 22 49 49 H 1.09001 * 110.30959 * 140.87871 * 24 23 22 50 50 H 1.08998 * 109.91910 * 333.50917 * 25 21 4 51 51 H 1.09004 * 109.91541 * 94.80453 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1298 -0.6982 1.2626 6 6 1.4998 -0.0221 2.4981 7 7 1.8899 -0.7829 3.6927 8 6 1.3868 -0.1401 4.9139 9 6 1.8116 -0.9598 6.1339 10 1 2.8939 -1.0897 6.1255 11 6 1.1331 -2.3304 6.0890 12 6 1.3960 -0.2265 7.4109 13 6 1.9214 -0.9711 8.6112 14 1 2.4940 -1.8768 8.4768 15 6 1.6701 -0.4964 9.8811 16 7 0.9724 0.6063 10.0448 17 14 2.3206 -1.4196 11.3690 18 1 3.8024 -1.4899 11.2989 19 1 1.9163 -0.7085 12.6084 20 1 1.7600 -2.7946 11.3825 21 7 1.5801 -2.1163 1.2312 22 6 1.9077 -2.7683 -0.0626 23 6 1.8516 -4.2788 0.2774 24 6 2.4471 -4.3346 1.7030 25 6 2.2667 -2.9143 2.2701 26 1 -0.3632 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 3.1271 1.4435 -0.0801 31 1 1.6129 1.9789 -0.8473 32 1 1.7436 1.9327 0.9273 33 1 0.4127 0.0334 2.4419 34 1 1.9125 0.9849 2.5580 35 1 2.8908 -0.9039 3.7334 36 1 0.2988 -0.0857 4.8741 37 1 1.7983 0.8664 4.9907 38 1 1.4361 -2.9144 6.9579 39 1 1.4291 -2.8527 5.1793 40 1 0.0509 -2.2004 6.0975 41 1 1.8076 0.7827 7.4006 42 1 0.3085 -0.1750 7.4626 43 1 0.7953 0.9400 10.9383 44 1 1.1646 -2.5164 -0.8193 45 1 2.9068 -2.4853 -0.3939 46 1 2.4626 -4.8538 -0.4185 47 1 0.8231 -4.6397 0.2746 48 1 3.5050 -4.5938 1.6613 49 1 1.9035 -5.0569 2.3121 50 1 3.2401 -2.4765 2.4916 51 1 1.6582 -2.9497 3.1737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = -17.869178 kcal Electronic energy + Delta-G solvation = -23665.556282 eV Core-core repulsion = 20598.780395 eV Total energy + Delta-G solvation = -3066.775886 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.74539 -36.79243 -35.96811 -33.65263 -31.94438 -30.87454 -28.80506 -27.49503 -27.17705 -26.50121 -24.85054 -23.16898 -22.10273 -21.43604 -20.54832 -19.36732 -18.61198 -16.37465 -16.25345 -16.14725 -15.31685 -14.88870 -14.53610 -14.44702 -13.83441 -13.67066 -13.54545 -13.26718 -13.07493 -12.99224 -12.53134 -12.21110 -12.17071 -11.99587 -11.70544 -11.51814 -11.41405 -11.20758 -11.16251 -11.02765 -10.98756 -10.81008 -10.70231 -10.67936 -10.44836 -10.36829 -10.20974 -10.11457 -9.64309 -9.09220 -8.91927 -8.29850 -8.29526 -7.89418 -5.94742 -3.95788 3.36106 3.40410 3.42918 3.98398 4.38639 4.51200 4.58655 4.68189 4.84279 4.91341 4.96923 5.07943 5.26233 5.33278 5.39270 5.41225 5.44290 5.53354 5.59443 5.63857 5.71453 5.75646 5.79279 5.82991 5.84110 5.84768 5.97177 5.97786 6.01121 6.08992 6.16965 6.20319 6.24053 6.36643 6.43502 6.56448 6.61585 6.77941 7.04620 7.09539 7.17050 7.25498 7.26369 7.45373 7.69880 7.74222 7.89915 8.05856 8.49902 9.10527 9.67381 11.16789 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.003511 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.477289 B = 7973.301580 C = 8921.851951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.151 4.151 4 C 0.085 3.915 5 H 0.035 0.965 6 C 0.064 3.936 7 N -0.679 5.679 8 C 0.064 3.936 9 C -0.081 4.081 10 H 0.051 0.949 11 C -0.121 4.121 12 C 0.028 3.972 13 C -0.512 4.512 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 N -0.495 5.495 22 C 0.031 3.969 23 C -0.123 4.123 24 C -0.138 4.138 25 C 0.051 3.949 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.330 0.670 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.051 0.949 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.011 0.989 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.069 0.931 50 H 0.035 0.965 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -4.040 -22.986 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.025 4.025 5 H 0.053 0.947 6 C -0.066 4.066 7 N -0.309 5.309 8 C -0.065 4.065 9 C -0.100 4.100 10 H 0.069 0.931 11 C -0.179 4.179 12 C -0.010 4.010 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.203 1.203 21 N -0.220 5.220 22 C -0.097 4.097 23 C -0.161 4.161 24 C -0.176 4.176 25 C -0.077 4.077 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.148 0.852 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.054 0.946 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.903 -4.323 -22.781 23.205 hybrid contribution 1.915 0.463 0.860 2.150 sum 2.818 -3.860 -21.922 22.436 Atomic orbital electron populations 1.21808 0.94324 1.02672 1.01021 1.21167 0.97081 0.95668 0.97010 1.21914 1.00638 0.96090 1.02205 1.21855 0.96246 0.89423 0.94936 0.94707 1.22103 1.01670 0.93677 0.89117 1.60851 1.17451 1.50806 1.01834 1.22145 0.99931 0.95172 0.89239 1.21176 0.98853 0.95603 0.94347 0.93085 1.21597 0.99482 0.96861 0.99923 1.19111 0.96677 0.94979 0.90221 1.21208 1.33437 1.09480 0.90937 0.92658 1.25017 0.95412 0.95080 0.99026 1.69962 1.39899 1.21602 1.22269 0.86700 0.79286 0.79994 0.82261 1.20354 1.21394 1.20260 1.64740 1.54321 1.00595 1.02316 1.23241 0.98877 0.93979 0.93557 1.22446 1.01396 0.95728 0.96519 1.22528 1.00333 0.98458 0.96326 1.23001 0.97578 0.90498 0.96599 0.92373 0.93691 0.91447 0.91378 0.93067 0.92610 0.92091 0.90014 0.95302 0.85224 0.91585 0.96125 0.92964 0.93863 0.94180 0.97057 0.96590 0.93079 0.90504 0.94568 0.91823 0.90977 0.92296 0.91226 0.94640 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.64 37.16 0.32 -1.02 16 2 C -0.09 -0.84 2.27 -90.62 -0.21 -1.04 16 3 C -0.15 -1.30 8.99 37.15 0.33 -0.97 16 4 C 0.08 0.92 1.53 -67.71 -0.10 0.82 16 5 H 0.04 0.40 7.77 -51.93 -0.40 0.00 16 6 C 0.06 0.79 4.68 -3.82 -0.02 0.78 16 7 N -0.68 -9.61 3.08 -113.78 -0.35 -9.96 16 8 C 0.06 1.10 5.07 -3.83 -0.02 1.08 16 9 C -0.08 -1.65 2.48 -90.62 -0.22 -1.87 16 10 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 11 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 12 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 13 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 14 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 N -0.50 -5.59 4.42 -222.50 -0.98 -6.57 16 22 C 0.03 0.30 4.94 -1.90 -0.01 0.29 16 23 C -0.12 -1.12 7.06 -24.87 -0.18 -1.30 16 24 C -0.14 -1.42 6.93 -25.37 -0.18 -1.59 16 25 C 0.05 0.60 4.95 -2.75 -0.01 0.59 16 26 H 0.06 0.60 6.29 -51.93 -0.33 0.27 16 27 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.70 7.12 -51.93 -0.37 0.33 16 29 H 0.07 0.61 6.67 -51.93 -0.35 0.26 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 33 H 0.08 1.09 6.13 -51.93 -0.32 0.78 16 34 H 0.03 0.36 6.63 -51.93 -0.34 0.01 16 35 H 0.33 4.56 7.63 -39.30 -0.30 4.26 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 39 H 0.04 0.73 6.32 -51.93 -0.33 0.41 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.70 7.19 -51.93 -0.37 0.32 16 45 H 0.04 0.35 7.96 -51.93 -0.41 -0.07 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.04 0.43 6.58 -51.93 -0.34 0.09 16 51 H 0.11 1.52 5.61 -51.93 -0.29 1.23 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -28.92 372.83 -10.32 -39.24 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -9.85 Total: 0.24 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.47 Total: -18.91 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.60 Total: -43.03 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.92 -10.32 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.374 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds