Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47584 * 2 1 4 4 C 1.53003 * 109.46966 * 120.00032 * 2 1 3 5 5 H 1.08996 * 109.47351 * 181.93219 * 4 2 1 6 6 C 1.53001 * 109.47284 * 301.93730 * 4 2 1 7 7 N 1.46897 * 109.47199 * 174.99963 * 6 4 2 8 8 C 1.46901 * 110.99883 * 179.97438 * 7 6 4 9 9 C 1.53005 * 109.47120 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46864 * 305.00269 * 9 8 7 11 11 C 1.52999 * 109.46601 * 64.99809 * 9 8 7 12 12 C 1.52999 * 109.46964 * 185.00194 * 9 8 7 13 13 C 1.50705 * 109.46622 * 175.00547 * 12 9 8 14 14 H 1.07996 * 120.00077 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99551 * 180.02562 * 13 12 9 16 16 N 1.31510 * 120.00124 * 359.71883 * 15 13 12 17 17 Si 1.86795 * 119.99709 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47091 * 269.72360 * 17 15 13 19 19 H 1.48503 * 109.47307 * 29.72408 * 17 15 13 20 20 H 1.48499 * 109.47134 * 149.72559 * 17 15 13 21 21 N 1.46909 * 109.47046 * 61.93606 * 4 2 1 22 22 C 1.48532 * 110.99848 * 51.46769 * 21 4 2 23 23 C 1.54939 * 103.22502 * 159.71807 * 22 21 4 24 24 C 1.54591 * 102.92311 * 322.59117 * 23 22 21 25 25 C 1.47897 * 110.99890 * 168.86810 * 21 4 2 26 26 H 1.08997 * 109.46726 * 65.68859 * 1 2 3 27 27 H 1.08996 * 109.47469 * 185.68995 * 1 2 3 28 28 H 1.08997 * 109.46888 * 305.69233 * 1 2 3 29 29 H 1.09005 * 109.47313 * 239.99586 * 2 1 3 30 30 H 1.09000 * 109.47271 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47524 * 300.00184 * 3 2 1 32 32 H 1.09007 * 109.47535 * 59.99821 * 3 2 1 33 33 H 1.09004 * 109.46963 * 54.99735 * 6 4 2 34 34 H 1.08999 * 109.46560 * 295.00114 * 6 4 2 35 35 H 1.00893 * 111.00139 * 56.04445 * 7 6 4 36 36 H 1.09002 * 109.47120 * 60.00293 * 8 7 6 37 37 H 1.08996 * 109.47033 * 299.99859 * 8 7 6 38 38 H 1.09002 * 109.47136 * 60.00627 * 11 9 8 39 39 H 1.09009 * 109.46815 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47633 * 299.99770 * 11 9 8 41 41 H 1.08994 * 109.47097 * 55.00300 * 12 9 8 42 42 H 1.08999 * 109.47058 * 294.99862 * 12 9 8 43 43 H 0.97001 * 120.00295 * 0.28111 * 16 15 13 44 44 H 1.08994 * 110.67336 * 278.15548 * 22 21 4 45 45 H 1.09001 * 110.66670 * 41.29114 * 22 21 4 46 46 H 1.09000 * 110.72773 * 204.22968 * 23 22 21 47 47 H 1.09003 * 110.87244 * 81.01428 * 23 22 21 48 48 H 1.08998 * 110.31046 * 263.03491 * 24 23 22 49 49 H 1.08998 * 110.31289 * 140.87301 * 24 23 22 50 50 H 1.09006 * 109.91650 * 333.50601 * 25 21 4 51 51 H 1.09003 * 109.92058 * 94.80149 * 25 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1294 -0.6914 1.2668 6 6 1.4906 -0.0288 2.4981 7 7 1.8811 -0.7902 3.6921 8 6 1.3702 -0.1529 4.9131 9 6 1.7957 -0.9731 6.1327 10 1 1.4655 -2.0047 6.0099 11 6 3.3195 -0.9377 6.2646 12 6 1.1606 -0.3808 7.3924 13 6 1.4789 -1.2584 8.5755 14 1 2.0742 -2.1496 8.4422 15 6 1.0092 -0.9239 9.8280 16 7 0.2882 0.1637 9.9910 17 14 1.4031 -2.0120 11.2943 18 1 0.3409 -3.0381 11.4488 19 1 2.7105 -2.6818 11.0767 20 1 1.4711 -1.1810 12.5232 21 7 1.5888 -2.1192 1.2261 22 6 1.9287 -2.7668 -0.0667 23 6 1.8801 -4.2783 0.2704 24 6 2.4668 -4.3327 1.6996 25 6 2.2739 -2.9145 2.2679 26 1 -0.3633 0.4231 -0.9365 27 1 -0.3634 -1.0225 0.1019 28 1 -0.3633 0.5996 0.8346 29 1 1.8934 -0.5139 -0.8900 30 1 3.1301 1.4423 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 0.4033 0.0201 2.4377 34 1 1.8966 0.9808 2.5619 35 1 2.8825 -0.9049 3.7362 36 1 0.2822 -0.1046 4.8699 37 1 1.7758 0.8555 4.9936 38 1 3.6497 0.0938 6.3874 39 1 3.6226 -1.5217 7.1338 40 1 3.7719 -1.3597 5.3672 41 1 0.0800 -0.3242 7.2622 42 1 1.5589 0.6192 7.5642 43 1 0.0833 0.7286 9.2295 44 1 1.1889 -2.5184 -0.8277 45 1 2.9281 -2.4770 -0.3912 46 1 2.4991 -4.8481 -0.4226 47 1 0.8539 -4.6456 0.2605 48 1 3.5265 -4.5853 1.6642 49 1 1.9240 -5.0595 2.3040 50 1 3.2431 -2.4710 2.4963 51 1 1.6599 -2.9554 3.1677 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602509963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = -22.105242 kcal Electronic energy + Delta-G solvation = -23660.830013 eV Core-core repulsion = 20593.870437 eV Total energy + Delta-G solvation = -3066.959576 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78316 -36.95049 -36.05375 -33.85292 -32.01204 -30.87875 -28.80421 -27.42085 -27.17042 -26.43544 -24.91331 -23.17855 -22.14772 -21.46735 -20.60902 -19.38714 -18.78603 -16.71503 -16.45682 -16.15354 -15.34019 -15.20640 -14.44066 -13.96567 -13.80087 -13.69601 -13.65125 -13.38052 -13.16541 -13.05861 -12.76503 -12.31589 -12.23382 -12.05497 -11.70288 -11.63054 -11.55798 -11.23582 -11.19211 -11.07976 -11.02622 -11.00811 -10.70465 -10.64936 -10.50698 -10.39281 -10.12766 -10.03687 -9.80688 -9.40580 -8.44616 -8.33724 -8.26169 -7.97339 -6.29249 -3.97098 3.46922 3.50381 3.65861 3.94769 4.34152 4.53989 4.60172 4.65477 4.80738 4.88146 4.93605 5.04479 5.22645 5.29863 5.34418 5.41061 5.47181 5.49829 5.55398 5.58025 5.68608 5.71475 5.74656 5.77699 5.79810 5.81238 5.83879 5.94044 5.95855 6.00426 6.06473 6.15397 6.19456 6.21106 6.32173 6.40739 6.49690 6.53319 6.85494 7.03331 7.05439 7.07544 7.13261 7.35718 7.47129 7.60798 7.68366 8.30655 8.54238 8.96158 9.74395 11.11274 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021066 B = 0.003530 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.854765 B = 7930.621637 C = 8785.476032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.150 4.150 4 C 0.085 3.915 5 H 0.035 0.965 6 C 0.064 3.936 7 N -0.681 5.681 8 C 0.063 3.937 9 C -0.075 4.075 10 H 0.066 0.934 11 C -0.132 4.132 12 C 0.015 3.985 13 C -0.593 4.593 14 H 0.050 0.950 15 C 0.012 3.988 16 N -0.917 5.917 17 Si 1.070 2.930 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.286 1.286 21 N -0.496 5.496 22 C 0.031 3.969 23 C -0.123 4.123 24 C -0.138 4.138 25 C 0.053 3.947 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.029 0.971 35 H 0.332 0.668 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.031 0.969 41 H 0.005 0.995 42 H 0.004 0.996 43 H 0.268 0.732 44 H 0.077 0.923 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.035 0.965 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -2.952 -23.092 23.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.025 4.025 5 H 0.053 0.947 6 C -0.066 4.066 7 N -0.312 5.312 8 C -0.065 4.065 9 C -0.094 4.094 10 H 0.085 0.915 11 C -0.189 4.189 12 C -0.023 4.023 13 C -0.631 4.631 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.554 5.554 17 Si 0.898 3.102 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.211 1.211 21 N -0.220 5.220 22 C -0.096 4.096 23 C -0.161 4.161 24 C -0.176 4.176 25 C -0.075 4.075 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.077 0.923 49 H 0.088 0.912 50 H 0.053 0.947 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.365 -3.522 -21.401 21.948 hybrid contribution 1.805 1.057 -1.728 2.713 sum 5.170 -2.465 -23.129 23.828 Atomic orbital electron populations 1.21810 0.94301 1.03005 1.00809 1.21171 0.97108 0.95655 0.96987 1.21904 1.00683 0.96097 1.02085 1.21866 0.96252 0.89422 0.94931 0.94729 1.22092 1.01690 0.93660 0.89111 1.60894 1.17503 1.51022 1.01800 1.22139 0.99748 0.95238 0.89406 1.21059 0.95091 0.99464 0.93803 0.91528 1.21721 0.96428 1.00622 1.00166 1.19235 0.94924 0.95911 0.92206 1.22062 1.36243 1.10789 0.94028 0.93203 1.25812 0.94327 0.98219 1.00738 1.70744 1.36400 1.13514 1.34716 0.83537 0.75904 0.75176 0.75548 1.21520 1.21552 1.21132 1.64730 1.54406 1.00609 1.02304 1.23243 0.98847 0.94025 0.93524 1.22448 1.01455 0.95701 0.96484 1.22524 1.00384 0.98402 0.96318 1.22941 0.97489 0.90626 0.96424 0.93632 0.91153 0.92573 0.91282 0.93043 0.92584 0.92203 0.90008 0.95345 0.84925 0.91595 0.96246 0.94255 0.91801 0.94970 0.97627 0.97800 0.92157 0.90458 0.94538 0.91762 0.90940 0.92257 0.91172 0.94700 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.55 37.16 0.32 -1.04 16 2 C -0.09 -0.84 2.28 -90.62 -0.21 -1.04 16 3 C -0.15 -1.29 8.89 37.15 0.33 -0.96 16 4 C 0.08 0.93 1.52 -67.71 -0.10 0.82 16 5 H 0.03 0.40 7.78 -51.93 -0.40 0.00 16 6 C 0.06 0.81 4.68 -3.83 -0.02 0.79 16 7 N -0.68 -9.84 3.62 -113.78 -0.41 -10.25 16 8 C 0.06 1.10 5.14 -3.82 -0.02 1.08 16 9 C -0.08 -1.55 2.54 -90.62 -0.23 -1.78 16 10 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 11 C -0.13 -2.50 8.77 37.16 0.33 -2.17 16 12 C 0.01 0.38 3.76 -27.88 -0.10 0.27 16 13 C -0.59 -16.92 8.41 -34.44 -0.29 -17.21 16 14 H 0.05 1.40 7.06 -52.49 -0.37 1.03 16 15 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 16 N -0.92 -28.54 13.65 55.43 0.76 -27.78 16 17 Si 1.07 25.75 29.90 -169.99 -5.08 20.66 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 N -0.50 -5.69 4.33 -222.49 -0.96 -6.66 16 22 C 0.03 0.30 5.01 -1.90 -0.01 0.29 16 23 C -0.12 -1.14 7.06 -24.87 -0.18 -1.31 16 24 C -0.14 -1.44 6.93 -25.38 -0.18 -1.61 16 25 C 0.05 0.64 4.95 -2.76 -0.01 0.63 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.75 7.25 -51.93 -0.38 0.37 16 28 H 0.06 0.57 6.61 -51.93 -0.34 0.23 16 29 H 0.07 0.61 6.65 -51.93 -0.35 0.27 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.55 6.59 -51.92 -0.34 0.21 16 33 H 0.08 1.11 6.25 -51.93 -0.32 0.79 16 34 H 0.03 0.35 6.74 -51.93 -0.35 0.00 16 35 H 0.33 4.66 5.87 -39.30 -0.23 4.43 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.32 6.95 -51.92 -0.36 0.96 16 40 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 41 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 42 H 0.00 0.10 8.00 -51.93 -0.42 -0.31 16 43 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 44 H 0.08 0.70 7.43 -51.93 -0.39 0.32 16 45 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.03 0.43 6.57 -51.93 -0.34 0.09 16 51 H 0.11 1.54 7.04 -51.93 -0.37 1.17 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -29.67 373.02 -10.43 -40.09 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -9.87 Total: 1.28 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -0.47 Total: -22.96 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.62 Total: -44.69 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.67 -10.43 -40.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602509963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.986 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds