Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46847 * 2 1 4 4 C 1.52997 * 109.47350 * 240.00418 * 2 1 3 5 5 C 1.50703 * 109.47241 * 64.99566 * 4 2 1 6 6 H 1.07992 * 119.99808 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99683 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00127 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99574 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47430 * 59.99603 * 9 7 5 11 11 H 1.48495 * 109.46930 * 180.02562 * 9 7 5 12 12 H 1.48510 * 109.47167 * 299.99882 * 9 7 5 13 13 C 1.52994 * 109.47135 * 119.99806 * 2 1 3 14 14 N 1.46900 * 109.47356 * 295.00093 * 13 2 1 15 15 C 1.46903 * 110.99777 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47023 * 179.97438 * 15 14 13 17 17 H 1.09003 * 109.47132 * 295.00630 * 16 15 14 18 18 C 1.52996 * 109.47230 * 175.00263 * 16 15 14 19 19 N 1.46904 * 109.46793 * 55.00206 * 16 15 14 20 20 C 1.46848 * 110.99785 * 55.79250 * 19 16 15 21 21 C 1.53035 * 109.52299 * 185.83852 * 20 19 16 22 22 C 1.53124 * 109.27796 * 300.81845 * 21 20 19 23 23 C 1.53123 * 109.15987 * 57.65478 * 22 21 20 24 24 C 1.46848 * 110.99902 * 179.97438 * 19 16 15 25 25 H 1.09002 * 109.46505 * 294.17850 * 24 19 16 26 26 C 1.53003 * 109.45289 * 54.15141 * 24 19 16 27 27 H 1.09004 * 109.46999 * 59.99549 * 1 2 3 28 28 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47099 * 299.99966 * 1 2 3 30 30 H 1.08992 * 109.47610 * 185.00219 * 4 2 1 31 31 H 1.09003 * 109.47020 * 305.00041 * 4 2 1 32 32 H 0.97001 * 119.99458 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47501 * 175.00144 * 13 2 1 34 34 H 1.09001 * 109.47076 * 55.00138 * 13 2 1 35 35 H 1.00896 * 111.00382 * 303.95366 * 14 13 2 36 36 H 1.08997 * 109.47051 * 60.00365 * 15 14 13 37 37 H 1.08998 * 109.47294 * 300.00192 * 15 14 13 38 38 H 1.09001 * 109.47423 * 180.02562 * 18 16 15 39 39 H 1.09003 * 109.47362 * 300.00226 * 18 16 15 40 40 H 1.08993 * 109.47060 * 59.99909 * 18 16 15 41 41 H 1.08994 * 109.46576 * 65.81839 * 20 19 16 42 42 H 1.09000 * 109.45362 * 305.84418 * 20 19 16 43 43 H 1.08996 * 109.50898 * 180.87781 * 21 20 19 44 44 H 1.09005 * 109.53788 * 60.77994 * 21 20 19 45 45 H 1.08993 * 109.52282 * 297.74924 * 22 21 20 46 46 H 1.09006 * 109.57197 * 177.59071 * 22 21 20 47 47 H 1.08998 * 109.50460 * 182.40357 * 23 22 21 48 48 H 1.09002 * 109.50129 * 62.28536 * 23 22 21 49 49 H 1.08998 * 109.46794 * 180.02562 * 26 24 19 50 50 H 1.08992 * 109.47327 * 300.02754 * 26 24 19 51 51 H 1.09002 * 109.46587 * 60.02765 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9924 -0.4021 -3.7283 8 7 2.6748 -1.5196 -3.8512 9 14 1.4988 0.5630 -5.2496 10 1 2.0917 1.9230 -5.1871 11 1 1.9927 -0.1376 -6.4621 12 1 0.0188 0.6706 -5.3090 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.7025 0.1909 4.8892 17 1 2.2075 1.1568 4.8721 18 6 2.0857 -0.5624 6.1645 19 7 0.2484 0.3981 4.8610 20 6 -0.4643 -0.8834 4.7824 21 6 -1.9627 -0.6254 4.6085 22 6 -2.4759 0.1933 5.7964 23 6 -1.6844 1.5011 5.8848 24 6 -0.1942 1.1810 6.0220 25 1 -0.0283 0.6055 6.9327 26 6 0.6028 2.4852 6.0909 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7197 -1.2952 32 1 2.9214 -1.8429 -4.7319 33 1 3.1263 -0.7994 1.2056 34 1 1.6054 -1.7197 1.2951 35 1 1.9881 0.9873 2.3967 36 1 3.2116 -0.7050 3.6405 37 1 1.6904 -1.6249 3.7296 38 1 1.7845 0.0201 7.0351 39 1 1.5807 -1.5283 6.1817 40 1 3.1645 -0.7162 6.1854 41 1 -0.2971 -1.4488 5.6991 42 1 -0.0928 -1.4537 3.9310 43 1 -2.4932 -1.5766 4.5658 44 1 -2.1326 -0.0722 3.6847 45 1 -2.3424 -0.3762 6.7161 46 1 -3.5337 0.4163 5.6563 47 1 -2.0161 2.0692 6.7539 48 1 -1.8493 2.0880 4.9812 49 1 0.2748 3.0663 6.9527 50 1 1.6642 2.2578 6.1887 51 1 0.4369 3.0608 5.1802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513146.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = -24.572905 kcal Electronic energy + Delta-G solvation = -23625.560218 eV Core-core repulsion = 20558.493637 eV Total energy + Delta-G solvation = -3067.066582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90404 -36.84841 -35.13843 -33.32901 -32.53913 -31.56217 -29.79066 -27.13006 -26.95410 -26.10971 -24.36898 -23.91979 -22.10009 -21.57440 -20.68373 -19.17820 -18.70127 -16.58557 -16.25061 -15.47424 -14.91212 -14.74431 -14.65235 -14.43021 -14.34481 -14.00040 -13.67962 -13.33721 -12.78440 -12.70287 -12.54142 -12.32973 -12.13733 -12.08916 -12.01036 -11.73422 -11.49445 -11.34602 -11.27287 -11.15927 -10.79515 -10.75219 -10.71911 -10.68707 -10.22357 -10.18271 -10.15485 -10.10927 -9.60263 -9.05504 -8.88846 -8.27432 -8.10018 -7.86265 -5.92566 -3.93265 3.38041 3.42023 3.44928 3.82721 4.46056 4.55205 4.67346 4.71095 4.86883 4.90235 5.07927 5.13595 5.24580 5.28990 5.30957 5.42400 5.43191 5.49839 5.53243 5.58412 5.63443 5.71436 5.77678 5.79083 5.83899 5.89444 5.91901 5.93654 6.01247 6.07615 6.15163 6.16591 6.25433 6.27660 6.41203 6.53083 6.67351 6.82477 7.12057 7.20565 7.26115 7.30316 7.31945 7.55168 7.75359 7.85180 7.93969 8.08510 8.53100 9.13220 9.69753 11.19044 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.003279 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.596463 B = 8537.235409 C = 8936.118560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.667 5.667 15 C 0.064 3.936 16 C 0.081 3.919 17 H 0.084 0.916 18 C -0.187 4.187 19 N -0.501 5.501 20 C 0.058 3.942 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.110 4.110 24 C 0.079 3.921 25 H 0.035 0.965 26 C -0.148 4.148 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.337 0.663 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 3.531 23.492 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.298 5.298 15 C -0.066 4.066 16 C -0.028 4.028 17 H 0.102 0.898 18 C -0.247 4.247 19 N -0.226 5.226 20 C -0.069 4.069 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.030 4.030 25 H 0.053 0.947 26 C -0.206 4.206 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.154 0.846 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.040 0.960 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.927 3.396 22.960 23.954 hybrid contribution 1.030 0.060 -0.198 1.051 sum -4.897 3.456 22.761 23.537 Atomic orbital electron populations 1.21558 0.95665 1.00347 1.00183 1.21157 0.96040 0.98759 0.93925 0.92996 1.19118 0.95785 0.95541 0.90581 1.21221 1.34464 1.08226 0.91026 0.92629 1.25020 0.95392 0.95103 0.99061 1.69961 1.39240 1.21250 1.23387 0.86698 0.78915 0.80104 0.82520 1.20332 1.21426 1.20266 1.22137 0.96704 0.97664 0.89952 1.60385 1.63667 1.05254 1.00450 1.22026 0.96497 0.97986 0.90089 1.21780 0.88962 0.98821 0.93220 0.89843 1.22454 1.01959 1.01184 0.99072 1.62044 1.03203 1.17686 1.39629 1.22072 0.93989 0.90690 1.00180 1.21558 0.94991 0.99734 0.99067 1.21578 0.99299 0.96546 0.98384 1.21608 0.93711 0.97428 1.02027 1.21617 0.95031 0.94518 0.91789 0.94708 1.21913 0.99680 0.96864 1.02099 0.93129 0.94464 0.93503 0.97092 0.96683 0.93112 0.96334 0.91976 0.84578 0.95613 0.91379 0.92396 0.92421 0.92240 0.95999 0.89613 0.92142 0.90591 0.92895 0.92162 0.92240 0.90881 0.92758 0.92655 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.12 5.07 -3.83 -0.02 1.10 16 14 N -0.67 -9.65 5.68 -113.78 -0.65 -10.29 16 15 C 0.06 0.78 4.52 -3.82 -0.02 0.76 16 16 C 0.08 0.84 2.13 -67.71 -0.14 0.70 16 17 H 0.08 0.87 6.21 -51.93 -0.32 0.55 16 18 C -0.19 -1.68 8.46 37.16 0.31 -1.37 16 19 N -0.50 -5.44 4.24 -218.75 -0.93 -6.37 16 20 C 0.06 0.65 4.67 -3.83 -0.02 0.63 16 21 C -0.12 -1.21 6.09 -26.65 -0.16 -1.38 16 22 C -0.12 -1.10 6.00 -26.60 -0.16 -1.26 16 23 C -0.11 -1.01 5.37 -26.65 -0.14 -1.15 16 24 C 0.08 0.75 1.87 -67.72 -0.13 0.62 16 25 H 0.04 0.34 6.63 -51.93 -0.34 -0.01 16 26 C -0.15 -1.29 8.76 37.16 0.33 -0.96 16 27 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 30 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.34 4.82 8.73 -39.29 -0.34 4.48 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.86 6.51 -51.93 -0.34 0.52 16 38 H 0.06 0.50 6.52 -51.93 -0.34 0.16 16 39 H 0.06 0.54 6.63 -51.93 -0.34 0.19 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.23 6.71 -51.93 -0.35 -0.12 16 42 H 0.09 1.09 6.01 -51.93 -0.31 0.77 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 0.47 6.27 -51.93 -0.33 0.14 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -29.26 377.27 -10.78 -40.04 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -10.05 Total: -0.34 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -0.56 Total: -19.03 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.84 Total: -43.35 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.26 -10.78 -40.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513146.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.464 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds