Wall clock time and date at job start Tue Mar 31 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47395 * 2 1 4 4 C 1.53004 * 109.47070 * 239.99263 * 2 1 3 5 5 C 1.50699 * 109.46780 * 65.00306 * 4 2 1 6 6 H 1.08007 * 120.00172 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99948 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99989 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00113 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46856 * 59.99761 * 9 7 5 11 11 H 1.48504 * 109.47064 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46932 * 299.99905 * 9 7 5 13 13 C 1.53002 * 109.46877 * 119.99838 * 2 1 3 14 14 N 1.46903 * 109.46993 * 294.99519 * 13 2 1 15 15 C 1.46901 * 111.00097 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47484 * 171.18742 * 15 14 13 17 17 H 1.09008 * 109.47006 * 296.46727 * 16 15 14 18 18 C 1.52994 * 109.47675 * 176.46537 * 16 15 14 19 19 N 1.46898 * 109.46914 * 56.46195 * 16 15 14 20 20 C 1.46845 * 111.00211 * 38.77740 * 19 16 15 21 21 C 1.53043 * 109.52323 * 174.15726 * 20 19 16 22 22 C 1.53121 * 109.27771 * 59.18097 * 21 20 19 23 23 C 1.53116 * 109.15798 * 302.34267 * 22 21 20 24 24 C 1.46849 * 111.00381 * 274.56450 * 19 16 15 25 25 H 1.08995 * 109.46053 * 65.82325 * 24 19 16 26 26 C 1.53007 * 109.46087 * 305.84563 * 24 19 16 27 27 H 1.09002 * 109.46836 * 300.00715 * 1 2 3 28 28 H 1.09002 * 109.46920 * 60.00047 * 1 2 3 29 29 H 1.08997 * 109.47356 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46952 * 184.99943 * 4 2 1 31 31 H 1.08995 * 109.47103 * 305.00346 * 4 2 1 32 32 H 0.97005 * 119.99920 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47232 * 175.00293 * 13 2 1 34 34 H 1.09000 * 109.47594 * 54.99487 * 13 2 1 35 35 H 1.00897 * 111.00014 * 56.05383 * 14 13 2 36 36 H 1.09001 * 109.46768 * 291.18312 * 15 14 13 37 37 H 1.09002 * 109.47005 * 51.18437 * 15 14 13 38 38 H 1.08993 * 109.47326 * 175.11973 * 18 16 15 39 39 H 1.09003 * 109.47239 * 295.12397 * 18 16 15 40 40 H 1.09007 * 109.47011 * 55.11714 * 18 16 15 41 41 H 1.09002 * 109.45781 * 294.17118 * 20 19 16 42 42 H 1.08996 * 109.46396 * 54.13819 * 20 19 16 43 43 H 1.08995 * 109.50474 * 299.23327 * 21 20 19 44 44 H 1.09005 * 109.49531 * 179.11612 * 21 20 19 45 45 H 1.08999 * 109.51668 * 182.44010 * 22 21 20 46 46 H 1.09000 * 109.52334 * 62.25019 * 22 21 20 47 47 H 1.09007 * 109.50624 * 297.71620 * 23 22 21 48 48 H 1.09005 * 109.50349 * 177.60082 * 23 22 21 49 49 H 1.09005 * 109.46838 * 67.86486 * 26 24 19 50 50 H 1.08994 * 109.47043 * 187.86583 * 26 24 19 51 51 H 1.09001 * 109.47088 * 307.87048 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0568 -2.4766 6 1 1.0800 0.9740 -2.3758 7 6 1.9923 -0.4026 -3.7282 8 7 2.6755 -1.5197 -3.8510 9 14 1.4988 0.5625 -5.2497 10 1 2.0920 1.9224 -5.1872 11 1 1.9937 -0.1378 -6.4621 12 1 0.0189 0.6702 -5.3090 13 6 2.0400 -0.7212 1.2493 14 7 1.6514 0.0376 2.4456 15 6 2.1257 -0.6263 3.6672 16 6 1.8987 0.2935 4.8686 17 1 2.4980 1.1967 4.7531 18 6 2.3109 -0.4315 6.1513 19 7 0.4772 0.6557 4.9462 20 6 -0.3769 -0.4876 4.6003 21 6 -1.8441 -0.1186 4.8318 22 6 -2.2037 1.0916 3.9654 23 6 -1.2681 2.2532 4.3114 24 6 0.1823 1.8154 4.0950 25 1 0.3278 1.5447 3.0493 26 6 1.1218 2.9669 4.4591 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1263 -0.7996 -1.2055 31 1 1.6054 -1.7199 -1.2950 32 1 2.9221 -1.8431 -4.7317 33 1 3.1263 -0.7994 1.2057 34 1 1.6053 -1.7198 1.2953 35 1 0.6529 0.1794 2.4754 36 1 1.5756 -1.5560 3.8124 37 1 3.1895 -0.8444 3.5725 38 1 2.2313 0.2519 6.9966 39 1 1.6545 -1.2867 6.3123 40 1 3.3408 -0.7765 6.0586 41 1 -0.2288 -0.7475 3.5521 42 1 -0.1137 -1.3402 5.2263 43 1 -1.9958 0.1280 5.8826 44 1 -2.4786 -0.9622 4.5600 45 1 -3.2355 1.3846 4.1594 46 1 -2.0893 0.8329 2.9127 47 1 -1.4107 2.5372 5.3541 48 1 -1.4912 3.1043 3.6680 49 1 2.1415 2.7079 4.1739 50 1 0.8142 3.8683 3.9290 51 1 1.0791 3.1448 5.5336 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:25 Heat of formation + Delta-G solvation = -12.486580 kcal Electronic energy + Delta-G solvation = -24184.964156 eV Core-core repulsion = 21118.421677 eV Total energy + Delta-G solvation = -3066.542479 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.22619 -36.76207 -35.20493 -33.17745 -32.65706 -31.55553 -30.18927 -27.06783 -27.02170 -26.21020 -24.53958 -23.94250 -22.24065 -21.59247 -20.29441 -19.70707 -18.74317 -16.64361 -16.29289 -15.65287 -15.38228 -14.81474 -14.52853 -14.37705 -14.04180 -13.92245 -13.70833 -13.29585 -13.07911 -12.80020 -12.42636 -12.23431 -12.10749 -11.99323 -11.86398 -11.79191 -11.70282 -11.49081 -11.39755 -11.09517 -10.90815 -10.80391 -10.72217 -10.68148 -10.34314 -10.29625 -10.18550 -10.07936 -9.73153 -9.17422 -8.98409 -8.33154 -8.26369 -8.04523 -5.97638 -3.99025 3.34231 3.38623 3.41084 3.79746 4.33749 4.49090 4.71541 4.76119 4.82032 4.99234 5.10173 5.22148 5.30829 5.36030 5.36979 5.38046 5.52559 5.56401 5.59424 5.64400 5.69183 5.73537 5.79285 5.79938 5.82071 5.88187 5.90509 5.95477 6.01126 6.03384 6.10411 6.13672 6.19165 6.24620 6.29487 6.37906 6.46683 6.54693 6.91335 7.07417 7.14402 7.16059 7.19085 7.34742 7.59769 7.69133 7.85039 8.02201 8.45935 9.06958 9.64369 11.13838 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021581 B = 0.003832 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.138065 B = 7305.195479 C = 7794.662147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.065 0.935 4 C 0.029 3.971 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.692 5.692 15 C 0.027 3.973 16 C 0.074 3.926 17 H 0.095 0.905 18 C -0.137 4.137 19 N -0.525 5.525 20 C 0.049 3.951 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.112 4.112 24 C 0.069 3.931 25 H 0.071 0.929 26 C -0.143 4.143 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.067 0.933 34 H 0.021 0.979 35 H 0.339 0.661 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.035 0.965 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 3.964 20.642 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.008 4.008 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.329 5.329 15 C -0.104 4.104 16 C -0.035 4.035 17 H 0.113 0.887 18 C -0.195 4.195 19 N -0.250 5.250 20 C -0.080 4.080 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.150 4.150 24 C -0.039 4.039 25 H 0.088 0.912 26 C -0.200 4.200 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.164 0.836 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.313 4.402 20.946 22.053 hybrid contribution -0.630 -0.688 -1.762 1.994 sum -5.943 3.714 19.184 20.424 Atomic orbital electron populations 1.21742 0.96832 1.00342 1.00076 1.21217 0.94698 1.00072 0.94239 0.91689 1.19093 0.96109 0.95314 0.90323 1.21192 1.34741 1.08266 0.90992 0.92648 1.25014 0.95307 0.95078 0.99074 1.69959 1.39018 1.21216 1.23479 0.86693 0.78856 0.80167 0.82495 1.20256 1.21355 1.20307 1.22160 1.00335 0.94412 0.89725 1.61020 1.19801 1.50495 1.01627 1.22648 1.01007 0.95857 0.90911 1.21928 0.89397 0.98899 0.93262 0.88732 1.21729 1.00381 1.00252 0.97126 1.62146 1.03585 1.05286 1.53961 1.22187 0.93160 0.93654 0.98955 1.21578 0.95237 0.97879 1.00628 1.21604 0.99114 0.95611 0.99851 1.21655 0.93954 0.97544 1.01833 1.21899 0.94643 0.90781 0.96625 0.91166 1.21864 0.99502 0.97253 1.01400 0.95419 0.91737 0.94074 0.96683 0.96824 0.93041 0.91481 0.96071 0.83610 0.95291 0.90883 0.92080 0.92965 0.92526 0.94709 0.91031 0.91341 0.91892 0.92014 0.92065 0.91564 0.91709 0.91986 0.92422 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.77 37.16 0.33 -2.18 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.06 1.10 5.12 -3.82 -0.02 1.08 16 14 N -0.69 -10.29 5.33 -113.77 -0.61 -10.90 16 15 C 0.03 0.34 4.53 -3.82 -0.02 0.32 16 16 C 0.07 0.81 2.58 -67.72 -0.17 0.64 16 17 H 0.09 1.10 5.29 -51.92 -0.27 0.82 16 18 C -0.14 -1.27 9.41 37.15 0.35 -0.92 16 19 N -0.52 -5.75 4.33 -218.76 -0.95 -6.70 16 20 C 0.05 0.53 4.05 -3.83 -0.02 0.51 16 21 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 22 C -0.12 -1.23 6.00 -26.61 -0.16 -1.39 16 23 C -0.11 -1.14 5.37 -26.65 -0.14 -1.28 16 24 C 0.07 0.78 2.10 -67.72 -0.14 0.63 16 25 H 0.07 0.94 4.77 -51.93 -0.25 0.69 16 26 C -0.14 -1.51 8.64 37.16 0.32 -1.19 16 27 H 0.03 0.45 6.68 -51.93 -0.35 0.10 16 28 H 0.06 1.31 6.95 -51.93 -0.36 0.95 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.34 4.95 2.17 -39.29 -0.09 4.86 16 36 H 0.03 0.37 6.69 -51.93 -0.35 0.02 16 37 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.49 7.04 -51.93 -0.37 0.12 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.03 0.44 4.95 -51.93 -0.26 0.18 16 42 H 0.07 0.75 6.87 -51.93 -0.36 0.39 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.70 6.28 -51.93 -0.33 0.37 16 50 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -28.85 368.70 -10.52 -39.37 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -9.66 Total: 1.89 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.58 Total: -19.61 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.82 Total: -43.96 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.85 -10.52 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.883 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds