Wall clock time and date at job start Tue Mar 31 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46716 * 2 1 4 4 C 1.52997 * 109.47332 * 240.00344 * 2 1 3 5 5 C 1.50703 * 109.47122 * 64.99693 * 4 2 1 6 6 H 1.08000 * 120.00086 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99894 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00463 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00061 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46983 * 59.99749 * 9 7 5 11 11 H 1.48492 * 109.47187 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46904 * 299.99816 * 9 7 5 13 13 C 1.53003 * 109.47435 * 119.99912 * 2 1 3 14 14 N 1.46900 * 109.47063 * 295.00363 * 13 2 1 15 15 C 1.46899 * 110.99928 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47266 * 188.40766 * 15 14 13 17 17 H 1.09001 * 109.47521 * 62.17217 * 16 15 14 18 18 C 1.52997 * 109.47332 * 182.17234 * 16 15 14 19 19 N 1.46904 * 109.46608 * 302.17217 * 16 15 14 20 20 C 1.46842 * 110.99973 * 320.73009 * 19 16 15 21 21 C 1.53037 * 109.52144 * 185.84034 * 20 19 16 22 22 C 1.53117 * 109.27969 * 300.82448 * 21 20 19 23 23 C 1.53117 * 109.16221 * 57.65488 * 22 21 20 24 24 C 1.46847 * 111.00079 * 84.94546 * 19 16 15 25 25 H 1.09000 * 109.46121 * 294.17354 * 24 19 16 26 26 C 1.53007 * 109.46194 * 54.14291 * 24 19 16 27 27 H 1.08999 * 109.47353 * 299.99403 * 1 2 3 28 28 H 1.08998 * 109.47304 * 59.99798 * 1 2 3 29 29 H 1.09003 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47468 * 184.99362 * 4 2 1 31 31 H 1.08996 * 109.47068 * 305.00057 * 4 2 1 32 32 H 0.96992 * 120.00484 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47110 * 175.00049 * 13 2 1 34 34 H 1.09003 * 109.46866 * 55.00079 * 13 2 1 35 35 H 1.00901 * 110.99956 * 303.95179 * 14 13 2 36 36 H 1.08997 * 109.47461 * 68.39935 * 15 14 13 37 37 H 1.09007 * 109.47027 * 308.40065 * 15 14 13 38 38 H 1.09006 * 109.47256 * 64.66722 * 18 16 15 39 39 H 1.08996 * 109.47450 * 184.67201 * 18 16 15 40 40 H 1.09001 * 109.46831 * 304.67176 * 18 16 15 41 41 H 1.08998 * 109.46745 * 305.85737 * 20 19 16 42 42 H 1.09005 * 109.45846 * 65.82847 * 20 19 16 43 43 H 1.08999 * 109.50197 * 180.88438 * 21 20 19 44 44 H 1.08993 * 109.53436 * 60.78927 * 21 20 19 45 45 H 1.08999 * 109.52661 * 297.74786 * 22 21 20 46 46 H 1.09005 * 109.52668 * 177.56236 * 22 21 20 47 47 H 1.09004 * 109.50526 * 182.40330 * 23 22 21 48 48 H 1.08999 * 109.50003 * 62.28490 * 23 22 21 49 49 H 1.08997 * 109.47203 * 51.91791 * 26 24 19 50 50 H 1.08991 * 109.46882 * 171.91698 * 26 24 19 51 51 H 1.08997 * 109.46896 * 291.91767 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9924 -0.4020 -3.7283 8 7 2.6756 -1.5190 -3.8513 9 14 1.4988 0.5631 -5.2496 10 1 2.0918 1.9231 -5.1870 11 1 1.9926 -0.1375 -6.4622 12 1 0.0189 0.6707 -5.3090 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 6 1.5280 0.0703 4.8913 17 1 0.4419 -0.0178 4.8661 18 6 2.0636 -0.5874 6.1646 19 7 1.9046 1.4902 4.8778 20 6 3.2903 1.6628 4.4235 21 6 3.6940 3.1326 4.5603 22 6 2.7501 3.9965 3.7194 23 6 1.3090 3.7616 4.1806 24 6 0.9745 2.2736 4.0548 25 1 1.0657 1.9677 3.0126 26 6 -0.4584 2.0310 4.5336 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1263 -0.7993 -1.2057 31 1 1.6054 -1.7197 -1.2952 32 1 2.9229 -1.8419 -4.7318 33 1 3.1264 -0.7994 1.2056 34 1 1.6055 -1.7198 1.2952 35 1 1.9881 0.9873 2.3967 36 1 3.2125 -0.5727 3.7123 37 1 1.8135 -1.6717 3.6565 38 1 3.1397 -0.4272 6.2313 39 1 1.5760 -0.1464 7.0340 40 1 1.8566 -1.6572 6.1356 41 1 3.9517 1.0464 5.0324 42 1 3.3706 1.3597 3.3796 43 1 4.7173 3.2632 4.2084 44 1 3.6278 3.4329 5.6059 45 1 2.8453 3.7233 2.6685 46 1 3.0069 5.0480 3.8480 47 1 0.6283 4.3417 3.5574 48 1 1.2047 4.0715 5.2204 49 1 -0.5155 2.1996 5.6089 50 1 -1.1334 2.7169 4.0219 51 1 -0.7467 1.0037 4.3110 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513148.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:28 Heat of formation + Delta-G solvation = -12.987074 kcal Electronic energy + Delta-G solvation = -24101.126081 eV Core-core repulsion = 21034.561899 eV Total energy + Delta-G solvation = -3066.564182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20049 -36.71103 -35.17187 -33.18003 -32.66538 -31.58467 -30.18270 -27.05633 -26.99391 -26.10390 -24.44139 -23.89360 -22.31046 -21.58358 -20.30616 -19.83594 -18.68941 -16.53026 -16.30595 -15.60330 -15.29773 -14.82467 -14.53082 -14.36547 -14.17745 -13.90428 -13.54585 -13.35837 -13.16258 -12.77354 -12.36494 -12.13869 -12.11576 -11.99042 -11.84524 -11.74358 -11.66536 -11.45168 -11.30686 -11.08454 -10.84885 -10.82192 -10.73630 -10.67225 -10.30735 -10.28759 -10.21777 -10.06523 -9.70849 -9.15824 -8.97153 -8.32793 -8.25431 -8.03731 -5.97513 -3.98857 3.34182 3.38563 3.41022 3.79885 4.32944 4.49080 4.71969 4.76841 4.82335 4.99540 5.10354 5.21881 5.31284 5.36240 5.37019 5.38238 5.52773 5.57111 5.59521 5.64798 5.67559 5.73769 5.78159 5.80853 5.86052 5.90931 5.91356 5.95865 6.03743 6.10337 6.13255 6.15487 6.20073 6.29058 6.40560 6.41215 6.54031 6.67731 6.99665 7.15366 7.16013 7.18932 7.19464 7.34813 7.58971 7.69017 7.84841 8.02344 8.46332 9.07197 9.64512 11.14010 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.003846 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.500180 B = 7278.826243 C = 7712.071986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.050 0.950 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.688 5.688 15 C 0.027 3.973 16 C 0.074 3.926 17 H 0.095 0.905 18 C -0.137 4.137 19 N -0.525 5.525 20 C 0.050 3.950 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.112 4.112 24 C 0.070 3.930 25 H 0.070 0.930 26 C -0.142 4.142 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.336 0.664 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 6.726 20.528 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.068 0.932 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.067 4.067 14 N -0.324 5.324 15 C -0.104 4.104 16 C -0.034 4.034 17 H 0.113 0.887 18 C -0.195 4.195 19 N -0.250 5.250 20 C -0.078 4.078 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.150 4.150 24 C -0.038 4.038 25 H 0.088 0.912 26 C -0.200 4.200 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.076 0.924 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.734 6.514 20.894 21.955 hybrid contribution 0.934 0.236 -1.866 2.100 sum -0.799 6.750 19.028 20.206 Atomic orbital electron populations 1.21573 0.95667 1.00557 1.00055 1.21184 0.96016 0.98697 0.94111 0.93173 1.19107 0.95833 0.95567 0.90424 1.21192 1.34701 1.08259 0.90994 0.92658 1.25013 0.95314 0.95080 0.99068 1.69951 1.39029 1.21238 1.23479 0.86695 0.78925 0.80104 0.82505 1.20316 1.21353 1.20247 1.22170 0.97042 0.97792 0.89660 1.60991 1.64030 1.05746 1.01664 1.22652 0.97402 0.99412 0.90947 1.21920 1.01357 0.86861 0.93290 0.88729 1.21730 1.01082 0.99488 0.97206 1.62146 1.01690 1.08076 1.53109 1.22165 0.90355 0.96855 0.98471 1.21573 0.98542 0.94470 1.00734 1.21600 0.95300 0.99538 0.99732 1.21652 0.96157 0.95537 1.01627 1.21893 0.92248 0.92909 0.96794 0.91231 1.21858 0.95060 1.01920 1.01146 0.94046 0.92795 0.94164 0.97036 0.96575 0.93042 0.96026 0.91558 0.83992 0.95243 0.90947 0.92963 0.92095 0.92546 0.91035 0.94716 0.91893 0.91379 0.92053 0.92036 0.91716 0.91587 0.92501 0.92450 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.09 5.05 -3.82 -0.02 1.07 16 14 N -0.69 -9.99 4.89 -113.78 -0.56 -10.55 16 15 C 0.03 0.33 4.53 -3.82 -0.02 0.32 16 16 C 0.07 0.80 2.57 -67.71 -0.17 0.63 16 17 H 0.09 1.07 5.30 -51.93 -0.28 0.80 16 18 C -0.14 -1.26 9.40 37.16 0.35 -0.91 16 19 N -0.53 -5.67 4.34 -218.76 -0.95 -6.62 16 20 C 0.05 0.54 4.05 -3.84 -0.02 0.52 16 21 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 22 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 23 C -0.11 -1.13 5.37 -26.65 -0.14 -1.27 16 24 C 0.07 0.77 2.09 -67.72 -0.14 0.63 16 25 H 0.07 0.91 4.70 -51.93 -0.24 0.67 16 26 C -0.14 -1.48 8.63 37.16 0.32 -1.16 16 27 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 35 H 0.34 4.89 3.95 -39.29 -0.16 4.74 16 36 H 0.03 0.37 6.60 -51.93 -0.34 0.03 16 37 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.05 0.48 7.01 -51.93 -0.36 0.12 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.75 6.85 -51.93 -0.36 0.39 16 42 H 0.03 0.43 5.07 -51.93 -0.26 0.17 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 51 H 0.06 0.69 6.31 -51.93 -0.33 0.36 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -28.83 371.02 -10.55 -39.37 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -9.78 Total: 1.28 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -0.57 Total: -19.44 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.77 Total: -43.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.83 -10.55 -39.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513148.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.385 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds