Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46822 * 2 1 4 4 C 1.52996 * 109.46930 * 240.00041 * 2 1 3 5 5 C 1.50696 * 109.47250 * 65.00089 * 4 2 1 6 6 H 1.08007 * 120.00130 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00386 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00033 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00418 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47081 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46981 * 119.99540 * 9 7 5 12 12 H 1.48496 * 109.47167 * 240.00068 * 9 7 5 13 13 C 1.52993 * 109.47129 * 119.99975 * 2 1 3 14 14 N 1.46902 * 109.47524 * 295.00148 * 13 2 1 15 15 C 1.46900 * 111.00264 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47081 * 179.97438 * 15 14 13 17 17 H 1.09006 * 109.47193 * 63.75392 * 16 15 14 18 18 C 1.53007 * 109.47231 * 183.75448 * 16 15 14 19 19 N 1.46899 * 109.47581 * 303.75566 * 16 15 14 20 20 C 1.46851 * 111.00034 * 300.54400 * 19 16 15 21 21 C 1.53031 * 109.52674 * 174.15727 * 20 19 16 22 22 C 1.53116 * 109.28059 * 59.18041 * 21 20 19 23 23 C 1.53124 * 109.15937 * 302.34705 * 22 21 20 24 24 C 1.46838 * 111.00603 * 176.33386 * 19 16 15 25 25 H 1.09000 * 109.46665 * 65.82389 * 24 19 16 26 26 C 1.52998 * 109.46250 * 305.85612 * 24 19 16 27 27 H 1.09005 * 109.46861 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47046 * 299.99385 * 1 2 3 29 29 H 1.08995 * 109.47484 * 60.00263 * 1 2 3 30 30 H 1.09008 * 109.47039 * 184.99692 * 4 2 1 31 31 H 1.08996 * 109.47614 * 304.99737 * 4 2 1 32 32 H 0.96993 * 120.00455 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.47378 * 55.00278 * 13 2 1 34 34 H 1.09005 * 109.47350 * 174.99995 * 13 2 1 35 35 H 1.00898 * 110.99877 * 56.04164 * 14 13 2 36 36 H 1.09003 * 109.47149 * 299.99959 * 15 14 13 37 37 H 1.09004 * 109.47402 * 59.99808 * 15 14 13 38 38 H 1.09005 * 109.46817 * 176.77173 * 18 16 15 39 39 H 1.08994 * 109.46968 * 296.76864 * 18 16 15 40 40 H 1.08996 * 109.46787 * 56.77266 * 18 16 15 41 41 H 1.08997 * 109.46300 * 294.17576 * 20 19 16 42 42 H 1.09006 * 109.46032 * 54.13817 * 20 19 16 43 43 H 1.09005 * 109.50064 * 179.12127 * 21 20 19 44 44 H 1.09001 * 109.50547 * 299.23429 * 21 20 19 45 45 H 1.08997 * 109.51972 * 62.24828 * 22 21 20 46 46 H 1.09002 * 109.52520 * 182.44472 * 22 21 20 47 47 H 1.08994 * 109.50444 * 177.59724 * 23 22 21 48 48 H 1.09002 * 109.49975 * 297.67297 * 23 22 21 49 49 H 1.08996 * 109.47231 * 66.44169 * 26 24 19 50 50 H 1.09004 * 109.47111 * 186.44636 * 26 24 19 51 51 H 1.09008 * 109.46726 * 306.44180 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4765 6 1 1.0799 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6772 -1.5182 -3.8512 9 14 1.4984 0.5627 -5.2496 10 1 0.7411 1.7738 -4.8435 11 1 2.7163 0.9684 -5.9963 12 1 0.6451 -0.2870 -6.1185 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0374 2.4456 15 6 2.1258 -0.6266 3.6671 16 6 1.7035 0.1914 4.8891 17 1 0.6156 0.2129 4.9537 18 6 2.2770 -0.4492 6.1548 19 7 2.2135 1.5631 4.7604 20 6 3.6783 1.5724 4.6577 21 6 4.1625 2.9972 4.3796 22 6 3.7060 3.9170 5.5154 23 6 2.1807 3.8519 5.6327 24 6 1.7540 2.4022 5.8744 25 1 2.1949 2.0442 6.8047 26 6 0.2289 2.3293 5.9722 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.1264 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 2.9251 -1.8407 -4.7317 33 1 1.6055 -1.7198 1.2951 34 1 3.1264 -0.7995 1.2056 35 1 0.6529 0.1793 2.4753 36 1 1.6922 -1.6246 3.7300 37 1 3.2128 -0.7038 3.6400 38 1 2.0244 0.1649 7.0192 39 1 1.8542 -1.4458 6.2811 40 1 3.3608 -0.5228 6.0656 41 1 4.1103 1.2182 5.5936 42 1 3.9895 0.9177 3.8436 43 1 5.2508 3.0064 4.3190 44 1 3.7420 3.3470 3.4368 45 1 4.1576 3.5906 6.4522 46 1 4.0114 4.9410 5.3000 47 1 1.8530 4.4717 6.4672 48 1 1.7290 4.2157 4.7098 49 1 -0.0690 1.3206 6.2582 50 1 -0.1214 3.0382 6.7225 51 1 -0.2094 2.5772 5.0054 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602513149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = -25.225123 kcal Electronic energy + Delta-G solvation = -23546.093799 eV Core-core repulsion = 20478.998935 eV Total energy + Delta-G solvation = -3067.094864 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88522 -36.92010 -35.14646 -33.29718 -32.56563 -31.55652 -29.77638 -27.11363 -26.99519 -26.20227 -24.43093 -24.00181 -22.06351 -21.57242 -20.63970 -19.09970 -18.69733 -16.66725 -16.26945 -15.51377 -14.95213 -14.82673 -14.60479 -14.41415 -14.34169 -14.00540 -13.49461 -13.41966 -12.88859 -12.71732 -12.61457 -12.22640 -12.12278 -12.07842 -11.98323 -11.81557 -11.72538 -11.47148 -11.20101 -11.16732 -10.83390 -10.74674 -10.72635 -10.67042 -10.29374 -10.16584 -10.16094 -10.07893 -9.62828 -9.06713 -8.88065 -8.28183 -8.10093 -7.87085 -5.92849 -3.93451 3.35473 3.42929 3.47464 3.82704 4.46309 4.55255 4.67691 4.71176 4.87234 4.90258 5.08359 5.13937 5.24798 5.29271 5.31096 5.42609 5.43078 5.48796 5.53334 5.59300 5.63761 5.71907 5.77962 5.78754 5.87674 5.89973 5.91431 5.93232 5.95224 6.07568 6.13288 6.16945 6.17717 6.24582 6.36173 6.41476 6.57550 6.66474 7.05497 7.19568 7.21068 7.26009 7.27209 7.56492 7.76509 7.85799 7.94792 8.08423 8.52863 9.13439 9.69760 11.18807 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.003309 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.727147 B = 8459.661196 C = 8827.881580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.670 5.670 15 C 0.065 3.935 16 C 0.081 3.919 17 H 0.083 0.917 18 C -0.187 4.187 19 N -0.502 5.502 20 C 0.058 3.942 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.110 4.110 24 C 0.079 3.921 25 H 0.035 0.965 26 C -0.148 4.148 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.258 0.742 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.337 0.663 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.054 0.946 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 6.178 23.224 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.301 5.301 15 C -0.065 4.065 16 C -0.028 4.028 17 H 0.101 0.899 18 C -0.246 4.246 19 N -0.226 5.226 20 C -0.070 4.070 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.029 4.029 25 H 0.052 0.948 26 C -0.205 4.205 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.525 6.695 22.619 23.595 hybrid contribution -0.429 -0.792 -0.090 0.906 sum -0.955 5.903 22.529 23.309 Atomic orbital electron populations 1.21725 0.96815 1.00206 1.00241 1.21179 0.94741 1.00084 0.94057 0.91624 1.19115 0.96061 0.95316 0.90522 1.21297 1.34301 1.08209 0.90996 0.92515 1.25023 0.95405 0.95099 0.99083 1.69978 1.39284 1.21360 1.23181 0.86586 0.78241 0.80151 0.83342 1.19729 1.21122 1.21173 1.22122 1.00028 0.94199 0.90043 1.60418 1.19480 1.49738 1.00467 1.22012 1.00487 0.94057 0.89958 1.21779 0.99877 0.88055 0.93111 0.89871 1.22451 1.01841 1.01322 0.99020 1.62038 1.09788 1.08935 1.41848 1.22066 0.87505 0.97521 0.99865 1.21566 0.99718 0.94729 0.99416 1.21574 0.95954 0.99678 0.98574 1.21610 0.95792 0.95305 1.02101 1.21605 0.95338 0.93830 0.92124 0.94752 1.21906 0.94937 1.01243 1.02442 0.94259 0.94851 0.92048 0.96767 0.96891 0.93226 0.96409 0.91892 0.84442 0.95658 0.91351 0.92455 0.92253 0.92342 0.95839 0.89885 0.92087 0.90568 0.92872 0.92126 0.92214 0.90842 0.92876 0.92651 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.71 2.55 -90.62 -0.23 -1.94 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.58 7.06 -52.48 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.35 13.29 55.43 0.74 -26.62 16 9 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.06 1.15 5.14 -3.83 -0.02 1.13 16 14 N -0.67 -9.96 6.25 -113.78 -0.71 -10.67 16 15 C 0.06 0.81 4.69 -3.83 -0.02 0.79 16 16 C 0.08 0.85 2.17 -67.71 -0.15 0.71 16 17 H 0.08 0.88 6.14 -51.93 -0.32 0.56 16 18 C -0.19 -1.70 8.49 37.16 0.32 -1.38 16 19 N -0.50 -5.58 4.24 -218.76 -0.93 -6.50 16 20 C 0.06 0.65 4.65 -3.83 -0.02 0.63 16 21 C -0.12 -1.24 6.09 -26.66 -0.16 -1.40 16 22 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 23 C -0.11 -1.03 5.37 -26.65 -0.14 -1.17 16 24 C 0.08 0.77 1.97 -67.73 -0.13 0.64 16 25 H 0.03 0.34 6.63 -51.93 -0.34 -0.01 16 26 C -0.15 -1.31 8.53 37.16 0.32 -0.99 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 29 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 30 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.34 4.90 6.98 -39.29 -0.27 4.63 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.88 6.47 -51.93 -0.34 0.54 16 38 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.55 6.72 -51.93 -0.35 0.20 16 41 H 0.02 0.25 6.71 -51.93 -0.35 -0.10 16 42 H 0.08 1.06 6.07 -51.93 -0.32 0.74 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.05 0.45 6.64 -51.93 -0.34 0.11 16 50 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -29.36 375.49 -10.79 -40.15 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -9.94 Total: 0.20 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.58 Total: -19.18 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.90 Total: -43.79 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.36 -10.79 -40.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602513149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.928 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds