Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47586 * 2 1 4 4 C 1.52999 * 109.47352 * 239.99308 * 2 1 3 5 5 C 1.50700 * 109.46867 * 65.00329 * 4 2 1 6 6 H 1.07992 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99542 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00373 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99820 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46963 * 59.99737 * 9 7 5 11 11 H 1.48499 * 109.47130 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46946 * 299.99837 * 9 7 5 13 13 C 1.53004 * 109.46806 * 119.99238 * 2 1 3 14 14 N 1.46894 * 109.47318 * 295.00314 * 13 2 1 15 15 C 1.46904 * 111.00235 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47441 * 174.68424 * 15 14 13 17 17 H 1.09004 * 109.47138 * 295.22233 * 16 15 14 18 18 C 1.52998 * 109.47394 * 175.21954 * 16 15 14 19 19 N 1.46898 * 109.47219 * 55.21941 * 16 15 14 20 20 C 1.46849 * 111.00415 * 190.31556 * 19 16 15 21 21 C 1.53031 * 109.51564 * 174.16573 * 20 19 16 22 22 C 1.53100 * 109.29209 * 59.18299 * 21 20 19 23 23 C 1.53120 * 109.15383 * 302.33950 * 22 21 20 24 24 H 1.08999 * 109.53539 * 297.68807 * 23 22 21 25 25 C 1.53000 * 109.50089 * 177.59357 * 23 22 21 26 26 C 1.46851 * 110.99951 * 66.10105 * 19 16 15 27 27 H 1.08994 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47393 * 300.01144 * 1 2 3 29 29 H 1.09007 * 109.46542 * 60.00598 * 1 2 3 30 30 H 1.09000 * 109.47034 * 185.00436 * 4 2 1 31 31 H 1.08998 * 109.46852 * 305.00440 * 4 2 1 32 32 H 0.97010 * 119.99944 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47085 * 174.99630 * 13 2 1 34 34 H 1.09006 * 109.46737 * 55.00478 * 13 2 1 35 35 H 1.00899 * 111.00139 * 56.04810 * 14 13 2 36 36 H 1.09000 * 109.46562 * 54.68212 * 15 14 13 37 37 H 1.08998 * 109.47175 * 294.69172 * 15 14 13 38 38 H 1.08999 * 109.47550 * 179.97438 * 18 16 15 39 39 H 1.09004 * 109.47206 * 300.00238 * 18 16 15 40 40 H 1.09002 * 109.47222 * 59.99992 * 18 16 15 41 41 H 1.09003 * 109.45668 * 294.18049 * 20 19 16 42 42 H 1.08998 * 109.45970 * 54.14956 * 20 19 16 43 43 H 1.09005 * 109.50402 * 179.11328 * 21 20 19 44 44 H 1.08993 * 109.50650 * 299.23265 * 21 20 19 45 45 H 1.08994 * 109.52976 * 182.43349 * 22 21 20 46 46 H 1.08998 * 109.57605 * 62.27104 * 22 21 20 47 47 H 1.08994 * 109.47520 * 300.19420 * 25 23 22 48 48 H 1.09000 * 109.46924 * 60.19572 * 25 23 22 49 49 H 1.08998 * 109.47184 * 180.19509 * 25 23 22 50 50 H 1.08994 * 109.46385 * 305.85818 * 26 19 16 51 51 H 1.08995 * 109.45607 * 65.82576 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0808 0.9743 -2.3758 7 6 1.9934 -0.4021 -3.7281 8 7 2.6766 -1.5191 -3.8508 9 14 1.5000 0.5630 -5.2496 10 1 2.0921 1.9233 -5.1866 11 1 1.9949 -0.1373 -6.4620 12 1 0.0200 0.6696 -5.3097 13 6 2.0399 -0.7211 1.2494 14 7 1.6512 0.0376 2.4456 15 6 2.1245 -0.6268 3.6674 16 6 1.8184 0.2556 4.8792 17 1 2.3912 1.1803 4.8093 18 6 2.2024 -0.4868 6.1607 19 7 0.3836 0.5694 4.9064 20 6 0.0902 1.6055 5.9048 21 6 -1.3824 2.0096 5.8048 22 6 -2.2618 0.7797 6.0450 23 6 -1.9028 -0.3022 5.0226 24 1 -2.1115 0.0631 4.0170 25 6 -2.7352 -1.5571 5.2932 26 6 -0.4152 -0.6395 5.1452 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.1263 -0.7996 -1.2054 31 1 1.6054 -1.7199 -1.2949 32 1 2.9245 -1.8418 -4.7315 33 1 3.1262 -0.7994 1.2058 34 1 1.6053 -1.7197 1.2953 35 1 0.6527 0.1795 2.4753 36 1 3.2001 -0.7896 3.5989 37 1 1.6184 -1.5857 3.7789 38 1 1.9847 0.1420 7.0240 39 1 1.6295 -1.4115 6.2305 40 1 3.2670 -0.7197 6.1406 41 1 0.2931 1.2161 6.9025 42 1 0.7192 2.4763 5.7201 43 1 -1.6037 2.7673 6.5564 44 1 -1.5827 2.4118 4.8118 45 1 -3.3106 1.0540 5.9319 46 1 -2.0912 0.3998 7.0523 47 1 -2.5272 -1.9211 6.2993 48 1 -3.7946 -1.3162 5.2057 49 1 -2.4767 -2.3280 4.5673 50 1 -0.1532 -1.3993 4.4089 51 1 -0.2100 -1.0183 6.1464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602514521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = -31.695898 kcal Electronic energy + Delta-G solvation = -23436.129435 eV Core-core repulsion = 20368.753977 eV Total energy + Delta-G solvation = -3067.375458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.85247 -36.97200 -35.50639 -33.42472 -32.39651 -31.51852 -29.90032 -27.05880 -26.80594 -26.21692 -24.69318 -23.90556 -22.05803 -21.85887 -20.46949 -19.39812 -18.76504 -16.55373 -16.24023 -15.60431 -15.03916 -14.88179 -14.70687 -14.44533 -14.30809 -14.04998 -13.65016 -13.34704 -13.21205 -12.81617 -12.70704 -12.41447 -12.24965 -12.01516 -11.92829 -11.84137 -11.69777 -11.34182 -11.29736 -11.15336 -10.87340 -10.81575 -10.75380 -10.64563 -10.46257 -10.31885 -10.24426 -10.08467 -9.61621 -9.05618 -8.89803 -8.32989 -8.26906 -7.87934 -5.91921 -3.92702 3.38599 3.42506 3.45440 3.74216 4.45393 4.53580 4.55043 4.67247 4.69398 4.93866 4.99842 5.10777 5.17365 5.26527 5.29664 5.36585 5.39852 5.43754 5.46933 5.51220 5.54574 5.57793 5.65880 5.73631 5.81152 5.83380 5.86835 5.91713 5.95661 5.96279 6.00615 6.09005 6.15555 6.18876 6.28307 6.38247 6.59652 6.68395 7.02158 7.05029 7.10686 7.21018 7.28225 7.57609 7.76911 7.91858 7.99471 8.09145 8.53559 9.13696 9.70311 11.19640 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.003245 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.519566 B = 8626.552863 C = 9098.808993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.064 0.936 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.064 3.936 14 N -0.681 5.681 15 C 0.068 3.932 16 C 0.085 3.915 17 H 0.089 0.911 18 C -0.186 4.186 19 N -0.525 5.525 20 C 0.057 3.943 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.091 4.091 24 H 0.080 0.920 25 C -0.147 4.147 26 C 0.056 3.944 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.013 0.987 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.349 0.651 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.073 0.927 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.159 2.356 23.790 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.314 5.314 15 C -0.062 4.062 16 C -0.024 4.024 17 H 0.107 0.893 18 C -0.245 4.245 19 N -0.248 5.248 20 C -0.070 4.070 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.110 4.110 24 H 0.099 0.901 25 C -0.204 4.204 26 C -0.072 4.072 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.170 0.830 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.673 2.852 23.154 24.265 hybrid contribution -0.540 -0.732 -0.045 0.911 sum -7.213 2.120 23.109 24.301 Atomic orbital electron populations 1.21720 0.96723 1.00251 1.00284 1.21193 0.94846 1.00014 0.94103 0.91729 1.19106 0.96052 0.95318 0.90460 1.21221 1.34515 1.08216 0.91025 0.92615 1.25018 0.95387 0.95098 0.99055 1.69961 1.39172 1.21289 1.23395 0.86699 0.78853 0.80169 0.82521 1.20272 1.21426 1.20322 1.22123 0.99989 0.94326 0.90066 1.60431 1.20962 1.49548 1.00481 1.21932 1.00013 0.94197 0.90058 1.21766 0.88180 0.99191 0.93258 0.89256 1.22451 1.02268 1.01062 0.98732 1.62019 1.05113 1.09212 1.48491 1.22051 0.96846 0.95146 0.93000 1.21581 0.94162 0.97289 1.02508 1.21621 0.99418 0.95542 0.98581 1.21181 0.94095 0.95344 1.00376 0.90115 1.21795 0.99776 0.97495 1.01372 1.22201 0.92929 0.92460 0.99621 0.94261 0.94717 0.92075 0.96760 0.96864 0.93109 0.91877 0.96378 0.83022 0.91140 0.96054 0.92635 0.92418 0.91918 0.95237 0.90794 0.91871 0.90817 0.92000 0.92633 0.93063 0.92499 0.92496 0.90858 0.94848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.77 37.16 0.33 -2.26 16 2 C -0.08 -1.76 2.55 -90.62 -0.23 -1.99 16 3 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.62 16 5 C -0.51 -14.61 8.41 -34.44 -0.29 -14.90 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.16 5.13 -3.83 -0.02 1.14 16 14 N -0.68 -10.58 6.44 -113.78 -0.73 -11.31 16 15 C 0.07 0.87 4.91 -3.82 -0.02 0.85 16 16 C 0.08 0.91 2.61 -67.72 -0.18 0.74 16 17 H 0.09 1.03 7.98 -51.93 -0.41 0.61 16 18 C -0.19 -1.66 8.44 37.16 0.31 -1.35 16 19 N -0.52 -5.54 3.79 -226.70 -0.86 -6.40 16 20 C 0.06 0.53 5.14 -3.84 -0.02 0.51 16 21 C -0.12 -1.00 6.09 -26.66 -0.16 -1.16 16 22 C -0.11 -0.94 5.29 -26.62 -0.14 -1.08 16 23 C -0.09 -0.84 2.88 -90.54 -0.26 -1.10 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.15 -1.20 9.20 37.16 0.34 -0.85 16 26 C 0.06 0.56 3.82 -3.83 -0.01 0.54 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.59 6.68 -51.93 -0.35 0.24 16 29 H 0.06 1.28 6.95 -51.92 -0.36 0.92 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.35 5.44 6.30 -39.29 -0.25 5.19 16 36 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.02 0.27 6.66 -51.93 -0.35 -0.07 16 38 H 0.05 0.47 6.83 -51.93 -0.35 0.11 16 39 H 0.06 0.52 6.46 -51.93 -0.34 0.19 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.03 0.26 6.88 -51.93 -0.36 -0.10 16 42 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.82 6.32 -51.93 -0.33 0.49 16 51 H 0.03 0.32 6.57 -51.93 -0.34 -0.02 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -29.44 378.78 -10.86 -40.30 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -10.12 Total: 0.19 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.57 Total: -18.80 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.85 Total: -44.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.44 -10.86 -40.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.607 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds