Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47586 * 2 1 4 4 C 1.52999 * 109.47352 * 239.99308 * 2 1 3 5 5 C 1.50700 * 109.46867 * 65.00329 * 4 2 1 6 6 H 1.07992 * 120.00254 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99542 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00373 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99820 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46963 * 59.99737 * 9 7 5 11 11 H 1.48499 * 109.47130 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46946 * 299.99837 * 9 7 5 13 13 C 1.53004 * 109.46806 * 119.99238 * 2 1 3 14 14 N 1.46894 * 109.47318 * 295.00314 * 13 2 1 15 15 C 1.46904 * 111.00235 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47441 * 174.68424 * 15 14 13 17 17 H 1.09004 * 109.47138 * 295.22233 * 16 15 14 18 18 C 1.52998 * 109.47394 * 175.21954 * 16 15 14 19 19 N 1.46898 * 109.47219 * 55.21941 * 16 15 14 20 20 C 1.46849 * 111.00415 * 190.31556 * 19 16 15 21 21 C 1.53031 * 109.51564 * 174.16573 * 20 19 16 22 22 C 1.53100 * 109.29209 * 59.18299 * 21 20 19 23 23 C 1.53120 * 109.15383 * 302.33950 * 22 21 20 24 24 H 1.08999 * 109.53539 * 297.68807 * 23 22 21 25 25 C 1.53000 * 109.50089 * 177.59357 * 23 22 21 26 26 C 1.46851 * 110.99951 * 66.10105 * 19 16 15 27 27 H 1.08994 * 109.47268 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47393 * 300.01144 * 1 2 3 29 29 H 1.09007 * 109.46542 * 60.00598 * 1 2 3 30 30 H 1.09000 * 109.47034 * 185.00436 * 4 2 1 31 31 H 1.08998 * 109.46852 * 305.00440 * 4 2 1 32 32 H 0.97010 * 119.99944 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47085 * 174.99630 * 13 2 1 34 34 H 1.09006 * 109.46737 * 55.00478 * 13 2 1 35 35 H 1.00899 * 111.00139 * 56.04810 * 14 13 2 36 36 H 1.09000 * 109.46562 * 54.68212 * 15 14 13 37 37 H 1.08998 * 109.47175 * 294.69172 * 15 14 13 38 38 H 1.08999 * 109.47550 * 179.97438 * 18 16 15 39 39 H 1.09004 * 109.47206 * 300.00238 * 18 16 15 40 40 H 1.09002 * 109.47222 * 59.99992 * 18 16 15 41 41 H 1.09003 * 109.45668 * 294.18049 * 20 19 16 42 42 H 1.08998 * 109.45970 * 54.14956 * 20 19 16 43 43 H 1.09005 * 109.50402 * 179.11328 * 21 20 19 44 44 H 1.08993 * 109.50650 * 299.23265 * 21 20 19 45 45 H 1.08994 * 109.52976 * 182.43349 * 22 21 20 46 46 H 1.08998 * 109.57605 * 62.27104 * 22 21 20 47 47 H 1.08994 * 109.47520 * 300.19420 * 25 23 22 48 48 H 1.09000 * 109.46924 * 60.19572 * 25 23 22 49 49 H 1.08998 * 109.47184 * 180.19509 * 25 23 22 50 50 H 1.08994 * 109.46385 * 305.85818 * 26 19 16 51 51 H 1.08995 * 109.45607 * 65.82576 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0808 0.9743 -2.3758 7 6 1.9934 -0.4021 -3.7281 8 7 2.6766 -1.5191 -3.8508 9 14 1.5000 0.5630 -5.2496 10 1 2.0921 1.9233 -5.1866 11 1 1.9949 -0.1373 -6.4620 12 1 0.0200 0.6696 -5.3097 13 6 2.0399 -0.7211 1.2494 14 7 1.6512 0.0376 2.4456 15 6 2.1245 -0.6268 3.6674 16 6 1.8184 0.2556 4.8792 17 1 2.3912 1.1803 4.8093 18 6 2.2024 -0.4868 6.1607 19 7 0.3836 0.5694 4.9064 20 6 0.0902 1.6055 5.9048 21 6 -1.3824 2.0096 5.8048 22 6 -2.2618 0.7797 6.0450 23 6 -1.9028 -0.3022 5.0226 24 1 -2.1115 0.0631 4.0170 25 6 -2.7352 -1.5571 5.2932 26 6 -0.4152 -0.6395 5.1452 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 3.1263 -0.7996 -1.2054 31 1 1.6054 -1.7199 -1.2949 32 1 2.9245 -1.8418 -4.7315 33 1 3.1262 -0.7994 1.2058 34 1 1.6053 -1.7197 1.2953 35 1 0.6527 0.1795 2.4753 36 1 3.2001 -0.7896 3.5989 37 1 1.6184 -1.5857 3.7789 38 1 1.9847 0.1420 7.0240 39 1 1.6295 -1.4115 6.2305 40 1 3.2670 -0.7197 6.1406 41 1 0.2931 1.2161 6.9025 42 1 0.7192 2.4763 5.7201 43 1 -1.6037 2.7673 6.5564 44 1 -1.5827 2.4118 4.8118 45 1 -3.3106 1.0540 5.9319 46 1 -2.0912 0.3998 7.0523 47 1 -2.5272 -1.9211 6.2993 48 1 -3.7946 -1.3162 5.2057 49 1 -2.4767 -2.3280 4.5673 50 1 -0.1532 -1.3993 4.4089 51 1 -0.2100 -1.0183 6.1464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602514521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -48.585140 kcal Electronic energy + Delta-G solvation = -23436.861807 eV Core-core repulsion = 20368.753977 eV Total energy + Delta-G solvation = -3068.107830 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.65372 -38.35443 -36.65384 -35.03340 -33.70465 -32.79632 -30.76215 -28.93305 -27.67412 -27.43167 -25.93921 -25.09095 -23.67522 -22.68916 -21.34766 -20.56284 -20.07968 -18.50864 -17.38752 -16.73185 -16.55910 -15.98073 -15.65002 -15.61487 -15.38297 -15.03901 -14.81093 -14.61990 -14.23865 -14.14799 -13.93128 -13.48864 -13.32464 -13.25895 -13.17023 -12.98255 -12.72626 -12.68205 -12.60071 -12.52663 -12.34210 -12.15758 -11.96969 -11.87663 -11.63690 -11.48154 -11.45328 -11.17244 -11.06760 -11.04075 -10.85235 -10.51541 -9.25356 -9.03719 -8.15846 -6.25095 1.40955 1.44147 1.51736 2.43524 2.94604 3.17318 3.35800 3.83473 3.91916 3.96063 4.11747 4.18252 4.24252 4.29053 4.33891 4.42290 4.45925 4.49560 4.51427 4.64595 4.66986 4.69494 4.75584 4.80253 4.83591 4.85675 4.90860 4.92503 4.99484 5.05772 5.06796 5.09787 5.17562 5.24787 5.28271 5.30987 5.32569 5.41347 5.42582 5.49078 5.57330 5.58351 5.82395 5.91018 6.14771 6.28541 6.29415 6.37214 6.69048 6.90590 7.43020 8.96133 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022261 B = 0.003245 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.519566 B = 8626.552863 C = 9098.808993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.077 3.923 14 N -0.680 5.680 15 C 0.068 3.932 16 C 0.090 3.910 17 H 0.083 0.917 18 C -0.178 4.178 19 N -0.538 5.538 20 C 0.058 3.942 21 C -0.115 4.115 22 C -0.110 4.110 23 C -0.091 4.091 24 H 0.063 0.937 25 C -0.143 4.143 26 C 0.060 3.940 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.044 0.956 30 H -0.014 1.014 31 H -0.012 1.012 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.016 0.984 35 H 0.350 0.650 36 H 0.070 0.930 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.058 0.942 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.253 3.366 25.132 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.052 4.052 14 N -0.313 5.313 15 C -0.061 4.061 16 C -0.018 4.018 17 H 0.101 0.899 18 C -0.237 4.237 19 N -0.262 5.262 20 C -0.070 4.070 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.109 4.109 24 H 0.082 0.918 25 C -0.201 4.201 26 C -0.068 4.068 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.004 0.996 31 H 0.007 0.993 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.171 0.829 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.774 3.872 24.519 26.012 hybrid contribution -0.176 -1.065 -0.428 1.161 sum -7.950 2.807 24.091 25.523 Atomic orbital electron populations 1.21601 0.95101 1.00388 1.00870 1.20995 0.96101 0.98893 0.93277 0.92679 1.18992 0.94133 0.94507 0.92716 1.21616 1.34503 1.08555 0.92096 0.92128 1.25958 0.95239 0.96104 1.02651 1.70101 1.40295 1.22989 1.24324 0.85557 0.78964 0.78771 0.78106 1.19273 1.20971 1.19156 1.21831 0.99291 0.94023 0.90098 1.60383 1.21049 1.49365 1.00503 1.22007 0.99889 0.94657 0.89594 1.21643 0.88522 0.98605 0.93062 0.89895 1.22359 1.02586 1.00884 0.97845 1.61999 1.04929 1.09767 1.49471 1.22076 0.97290 0.94630 0.92959 1.21569 0.93731 0.97787 1.02218 1.21592 0.99710 0.94955 0.98482 1.21162 0.93778 0.96171 0.99837 0.91847 1.21766 0.99944 0.96790 1.01614 1.22150 0.93295 0.91916 0.99424 0.94329 0.91865 0.93640 0.99583 0.99320 0.92945 0.92697 0.96619 0.82899 0.91192 0.95816 0.91706 0.92422 0.91390 0.94411 0.91008 0.90328 0.92215 0.91354 0.91892 0.92241 0.91873 0.93191 0.92313 0.94194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.77 71.98 0.63 -4.09 16 2 C -0.07 -3.17 2.55 -10.79 -0.03 -3.20 16 3 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.03 1.85 4.45 29.85 0.13 1.99 16 5 C -0.53 -30.73 8.41 25.60 0.22 -30.51 16 6 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 7 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 8 N -0.94 -58.30 13.29 21.45 0.28 -58.01 16 9 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 C 0.08 2.82 5.13 86.31 0.44 3.26 16 14 N -0.68 -20.69 6.44 -513.90 -3.31 -24.00 16 15 C 0.07 1.69 4.91 86.30 0.42 2.11 16 16 C 0.09 1.82 2.61 44.91 0.12 1.94 16 17 H 0.08 1.80 7.98 -2.39 -0.02 1.78 16 18 C -0.18 -2.82 8.44 71.98 0.61 -2.22 16 19 N -0.54 -10.59 3.79 -871.15 -3.30 -13.89 16 20 C 0.06 0.96 5.14 86.32 0.44 1.41 16 21 C -0.12 -1.74 6.09 30.64 0.19 -1.56 16 22 C -0.11 -1.58 5.29 30.67 0.16 -1.41 16 23 C -0.09 -1.55 2.88 -10.74 -0.03 -1.58 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 C -0.14 -2.13 9.20 71.98 0.66 -1.46 16 26 C 0.06 1.11 3.82 86.32 0.33 1.44 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.07 6.68 -2.39 -0.02 2.05 16 29 H 0.04 1.88 6.95 -2.38 -0.02 1.86 16 30 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 33 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.35 10.55 6.30 -89.69 -0.56 9.98 16 36 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 37 H 0.02 0.59 6.66 -2.39 -0.02 0.57 16 38 H 0.06 0.93 6.83 -2.39 -0.02 0.91 16 39 H 0.06 0.93 6.46 -2.39 -0.02 0.91 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 0.57 6.88 -2.39 -0.02 0.56 16 42 H 0.07 1.22 8.01 -2.39 -0.02 1.20 16 43 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 1.26 6.32 -2.39 -0.02 1.24 16 51 H 0.04 0.69 6.57 -2.39 -0.02 0.67 16 Total: -1.00 -63.34 378.78 0.75 -62.59 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.29 Total: 19.60 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.76 Total: -33.56 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -6.32 Total: -95.91 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -63.34 0.75 -62.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.007 kcal (2) G-P(sol) polarization free energy of solvation -63.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds