Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47199 * 2 1 4 4 C 1.52999 * 109.47069 * 239.99565 * 2 1 3 5 5 C 1.50706 * 109.46573 * 65.00394 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 C 1.53003 * 109.46755 * 119.99953 * 2 1 3 14 14 N 1.46894 * 109.47533 * 294.99652 * 13 2 1 15 15 C 1.46897 * 111.00411 * 180.02562 * 14 13 2 16 16 C 1.53005 * 109.47427 * 180.02562 * 15 14 13 17 17 H 1.09001 * 109.46805 * 295.00182 * 16 15 14 18 18 C 1.52992 * 109.47241 * 174.99854 * 16 15 14 19 19 N 1.46897 * 109.46758 * 54.99597 * 16 15 14 20 20 C 1.46851 * 111.00331 * 66.05076 * 19 16 15 21 21 C 1.53033 * 109.52886 * 185.83476 * 20 19 16 22 22 C 1.53124 * 109.27535 * 300.82071 * 21 20 19 23 23 C 1.53116 * 109.16001 * 57.65339 * 22 21 20 24 24 H 1.08999 * 109.50729 * 62.32428 * 23 22 21 25 25 C 1.53001 * 109.50207 * 182.40211 * 23 22 21 26 26 C 1.46849 * 110.99714 * 190.25525 * 19 16 15 27 27 H 1.09000 * 109.47048 * 59.99887 * 1 2 3 28 28 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46743 * 300.00156 * 1 2 3 30 30 H 1.09000 * 109.47486 * 305.00460 * 4 2 1 31 31 H 1.09001 * 109.47362 * 184.99737 * 4 2 1 32 32 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47422 * 55.00049 * 13 2 1 34 34 H 1.09005 * 109.46949 * 174.99658 * 13 2 1 35 35 H 1.00901 * 111.00320 * 303.96395 * 14 13 2 36 36 H 1.09004 * 109.47068 * 300.00095 * 15 14 13 37 37 H 1.08995 * 109.47275 * 59.99618 * 15 14 13 38 38 H 1.09001 * 109.47489 * 299.99909 * 18 16 15 39 39 H 1.09004 * 109.47353 * 59.99628 * 18 16 15 40 40 H 1.09000 * 109.47142 * 180.02562 * 18 16 15 41 41 H 1.09000 * 109.45764 * 305.85308 * 20 19 16 42 42 H 1.09002 * 109.46319 * 65.81547 * 20 19 16 43 43 H 1.09000 * 109.49890 * 60.76051 * 21 20 19 44 44 H 1.08994 * 109.50837 * 180.87859 * 21 20 19 45 45 H 1.09005 * 109.51572 * 177.55530 * 22 21 20 46 46 H 1.08996 * 109.52530 * 297.68369 * 22 21 20 47 47 H 1.09004 * 109.46887 * 59.99710 * 25 23 22 48 48 H 1.08996 * 109.47408 * 179.97438 * 25 23 22 49 49 H 1.09008 * 109.47071 * 299.99965 * 25 23 22 50 50 H 1.08996 * 109.46292 * 294.17743 * 26 19 16 51 51 H 1.08995 * 109.46240 * 54.14872 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0765 0.9720 -2.3759 7 6 1.9933 -0.4018 -3.7282 8 7 2.6764 -1.5189 -3.8511 9 14 1.4997 0.5634 -5.2495 10 1 2.5653 1.5429 -5.5817 11 1 1.3130 -0.3704 -6.3891 12 1 0.2285 1.2848 -4.9872 13 6 2.0399 -0.7213 1.2493 14 7 1.6514 0.0374 2.4457 15 6 2.1257 -0.6266 3.6672 16 6 1.7023 0.1909 4.8893 17 1 2.2061 1.1574 4.8722 18 6 2.0865 -0.5620 6.1645 19 7 0.2480 0.3962 4.8611 20 6 -0.4664 -0.8760 5.0272 21 6 -1.9688 -0.6462 4.8479 22 6 -2.4519 0.3713 5.8853 23 6 -1.6585 1.6707 5.7221 24 1 -1.8466 2.0903 4.7339 25 6 -2.0932 2.6725 6.7937 26 6 -0.1652 1.3737 5.8761 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6053 -1.7199 -1.2951 31 1 3.1263 -0.7995 -1.2056 32 1 2.9236 -1.8418 -4.7316 33 1 1.6053 -1.7199 1.2952 34 1 3.1263 -0.7996 1.2056 35 1 1.9881 0.9873 2.3967 36 1 1.6920 -1.6246 3.7301 37 1 3.2126 -0.7039 3.6401 38 1 1.5827 -1.5285 6.1816 39 1 3.1656 -0.7144 6.1854 40 1 1.7845 0.0201 7.0351 41 1 -0.1165 -1.5891 4.2809 42 1 -0.2761 -1.2718 6.0249 43 1 -2.1612 -0.2634 3.8456 44 1 -2.5001 -1.5876 4.9867 45 1 -3.5127 0.5706 5.7332 46 1 -2.2962 -0.0283 6.8873 47 1 -1.9036 2.2529 7.7817 48 1 -1.5279 3.5971 6.6774 49 1 -3.1577 2.8810 6.6857 50 1 0.0237 0.9673 6.8697 51 1 0.4035 2.2944 5.7464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602514522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = -30.212980 kcal Electronic energy + Delta-G solvation = -23333.066685 eV Core-core repulsion = 20265.755532 eV Total energy + Delta-G solvation = -3067.311154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.71263 -36.96049 -35.48661 -33.35151 -32.17270 -31.67533 -29.94462 -27.02520 -26.69436 -26.12638 -24.49441 -23.60441 -22.41721 -21.97737 -20.22247 -19.38053 -18.78111 -16.45282 -16.24029 -15.44606 -14.95676 -14.71021 -14.54962 -14.44765 -14.36709 -14.00129 -13.82020 -13.41805 -12.92818 -12.82095 -12.55493 -12.47770 -12.13186 -12.06835 -11.96763 -11.77405 -11.52720 -11.34594 -11.24998 -11.10213 -10.81391 -10.74093 -10.70048 -10.65143 -10.29223 -10.25406 -10.20268 -10.09496 -9.59879 -9.05054 -8.87548 -8.27412 -8.12509 -7.84012 -5.92388 -3.92976 3.36577 3.42672 3.46614 3.82380 4.45622 4.54796 4.60602 4.72550 4.82099 4.89531 5.01952 5.12064 5.24214 5.28980 5.34917 5.41963 5.43442 5.47166 5.53249 5.54472 5.59185 5.64098 5.69115 5.71159 5.81414 5.87320 5.90736 5.95791 5.99711 6.01487 6.10218 6.15045 6.21824 6.28703 6.39231 6.54306 6.68335 6.83663 7.12072 7.17956 7.20421 7.31278 7.32745 7.56930 7.76003 7.86540 7.94801 8.08866 8.53551 9.13761 9.70086 11.19270 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023183 B = 0.003169 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.474194 B = 8833.519058 C = 9442.478023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 H 0.051 0.949 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.666 5.666 15 C 0.068 3.932 16 C 0.084 3.916 17 H 0.078 0.922 18 C -0.186 4.186 19 N -0.507 5.507 20 C 0.059 3.941 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.089 4.089 24 H 0.081 0.919 25 C -0.146 4.146 26 C 0.061 3.939 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.335 0.665 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.025 0.975 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.054 0.946 49 H 0.055 0.945 50 H 0.027 0.973 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 3.701 23.930 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.296 5.296 15 C -0.062 4.062 16 C -0.025 4.025 17 H 0.096 0.904 18 C -0.246 4.246 19 N -0.230 5.230 20 C -0.069 4.069 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.108 4.108 24 H 0.099 0.901 25 C -0.204 4.204 26 C -0.067 4.067 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.153 0.847 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.045 0.955 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.652 3.482 23.360 24.537 hybrid contribution 1.076 0.224 -0.146 1.108 sum -5.576 3.706 23.215 24.161 Atomic orbital electron populations 1.21556 0.95662 1.00357 1.00174 1.21159 0.96054 0.98752 0.93937 0.93003 1.19124 0.95792 0.95543 0.90593 1.21263 1.34213 1.08349 0.91020 0.92566 1.25024 0.95440 0.95082 0.99074 1.69969 1.39337 1.21248 1.23283 0.86639 0.78932 0.79808 0.82894 1.20805 1.21356 1.19864 1.22137 0.96656 0.97692 0.89953 1.60374 1.63659 1.05158 1.00459 1.21964 0.96310 0.97964 0.89998 1.21715 0.88556 0.98792 0.93405 0.90427 1.22449 1.02045 1.01305 0.98751 1.61968 1.03822 1.09713 1.47459 1.22060 0.94015 0.91684 0.99143 1.21569 0.94988 0.98580 1.00336 1.21626 0.99299 0.95427 0.98791 1.21152 0.94242 0.95409 1.00008 0.90064 1.21800 1.01176 0.98907 0.98474 1.22124 0.95754 0.96002 0.92834 0.93139 0.94460 0.93496 0.96677 0.97081 0.93174 0.91960 0.96372 0.84721 0.91464 0.95635 0.92147 0.92166 0.92652 0.90313 0.95646 0.90575 0.92075 0.92154 0.92815 0.93130 0.92685 0.92601 0.95535 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.57 8.41 -34.44 -0.29 -14.86 16 6 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 14 N -0.67 -9.80 5.68 -113.78 -0.65 -10.44 16 15 C 0.07 0.83 4.86 -3.82 -0.02 0.81 16 16 C 0.08 0.88 2.55 -67.72 -0.17 0.71 16 17 H 0.08 0.81 7.98 -51.93 -0.41 0.39 16 18 C -0.19 -1.65 8.45 37.15 0.31 -1.34 16 19 N -0.51 -5.55 4.33 -226.69 -0.98 -6.53 16 20 C 0.06 0.63 4.54 -3.83 -0.02 0.61 16 21 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 22 C -0.11 -1.02 5.29 -26.61 -0.14 -1.16 16 23 C -0.09 -0.82 2.88 -90.54 -0.26 -1.08 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 C -0.15 -1.10 9.20 37.16 0.34 -0.76 16 26 C 0.06 0.59 4.42 -3.83 -0.02 0.57 16 27 H 0.05 1.09 6.94 -51.93 -0.36 0.73 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.86 7.75 -51.93 -0.40 0.46 16 30 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.34 4.85 8.73 -39.29 -0.34 4.51 16 36 H 0.07 0.86 6.67 -51.93 -0.35 0.51 16 37 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.55 6.46 -51.93 -0.34 0.21 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.47 6.82 -51.93 -0.35 0.12 16 41 H 0.08 0.95 6.33 -51.93 -0.33 0.62 16 42 H 0.03 0.26 6.58 -51.93 -0.34 -0.08 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 50 H 0.03 0.25 6.88 -51.93 -0.36 -0.11 16 51 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 LS Contribution 381.97 15.07 5.76 5.76 Total: -1.00 -29.50 381.97 -10.98 -40.49 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -10.27 Total: -0.91 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.56 Total: -18.66 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.89 Total: -43.70 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.50 -10.98 -40.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.275 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds