Wall clock time and date at job start Tue Mar 31 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47035 * 2 1 4 4 C 1.53000 * 109.47482 * 239.99504 * 2 1 3 5 5 C 1.50700 * 109.46766 * 65.00063 * 4 2 1 6 6 H 1.07992 * 120.00198 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99575 * 180.02562 * 5 4 2 8 8 N 1.31508 * 120.00242 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99664 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46837 * 89.99901 * 9 7 5 11 11 H 1.48496 * 109.46733 * 209.99868 * 9 7 5 12 12 H 1.48493 * 109.46960 * 329.99956 * 9 7 5 13 13 C 1.53006 * 109.46674 * 119.99381 * 2 1 3 14 14 N 1.46892 * 109.47482 * 295.00026 * 13 2 1 15 15 C 1.46904 * 111.00333 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47061 * 180.02562 * 15 14 13 17 17 H 1.09000 * 109.47469 * 65.00890 * 16 15 14 18 18 C 1.53005 * 109.46870 * 185.00156 * 16 15 14 19 19 N 1.46898 * 109.47398 * 305.00142 * 16 15 14 20 20 C 1.46846 * 110.99964 * 304.21262 * 19 16 15 21 21 C 1.53032 * 109.52443 * 174.16225 * 20 19 16 22 22 C 1.53123 * 109.28121 * 59.17535 * 21 20 19 23 23 C 1.53124 * 109.16220 * 302.35028 * 22 21 20 24 24 H 1.08993 * 109.50112 * 297.71243 * 23 22 21 25 25 C 1.52995 * 109.50291 * 177.59185 * 23 22 21 26 26 C 1.46846 * 111.00056 * 180.02562 * 19 16 15 27 27 H 1.08991 * 109.47279 * 300.00165 * 1 2 3 28 28 H 1.08999 * 109.46541 * 60.00850 * 1 2 3 29 29 H 1.09005 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46773 * 185.00055 * 4 2 1 31 31 H 1.09003 * 109.46982 * 305.00028 * 4 2 1 32 32 H 0.97007 * 119.99947 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46904 * 175.00147 * 13 2 1 34 34 H 1.09003 * 109.46906 * 55.00701 * 13 2 1 35 35 H 1.00897 * 111.00457 * 303.95797 * 14 13 2 36 36 H 1.08999 * 109.46646 * 60.00225 * 15 14 13 37 37 H 1.09000 * 109.47013 * 300.00740 * 15 14 13 38 38 H 1.09002 * 109.47364 * 60.00323 * 18 16 15 39 39 H 1.08998 * 109.47052 * 180.02562 * 18 16 15 40 40 H 1.09002 * 109.47099 * 300.00090 * 18 16 15 41 41 H 1.09009 * 109.46169 * 294.17270 * 20 19 16 42 42 H 1.08995 * 109.46669 * 54.15371 * 20 19 16 43 43 H 1.09001 * 109.50949 * 179.12117 * 21 20 19 44 44 H 1.09005 * 109.50313 * 299.19974 * 21 20 19 45 45 H 1.09001 * 109.51952 * 62.25288 * 22 21 20 46 46 H 1.09002 * 109.52604 * 182.38110 * 22 21 20 47 47 H 1.09003 * 109.47045 * 300.19606 * 25 23 22 48 48 H 1.09006 * 109.47389 * 60.19473 * 25 23 22 49 49 H 1.09006 * 109.46783 * 180.19736 * 25 23 22 50 50 H 1.09008 * 109.46456 * 305.85644 * 26 19 16 51 51 H 1.09003 * 109.46474 * 65.82149 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.6415 0.0569 -2.4765 6 1 1.0801 0.9739 -2.3757 7 6 1.9926 -0.4025 -3.7282 8 7 2.6749 -1.5200 -3.8510 9 14 1.4978 0.5618 -5.2497 10 1 2.5630 1.5413 -5.5830 11 1 1.3105 -0.3725 -6.3886 12 1 0.2267 1.2831 -4.9869 13 6 2.0399 -0.7212 1.2494 14 7 1.6513 0.0375 2.4457 15 6 2.1246 -0.6269 3.6674 16 6 1.7011 0.1906 4.8893 17 1 0.6138 0.1935 4.9655 18 6 2.2991 -0.4328 6.1521 19 7 2.1858 1.5701 4.7475 20 6 3.6396 1.5985 4.5419 21 6 4.0874 3.0333 4.2540 22 6 3.7023 3.9296 5.4342 23 6 2.1898 3.8443 5.6576 24 1 1.6701 4.2165 4.7748 25 6 1.8045 4.6903 6.8728 26 6 1.7976 2.3859 5.9051 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1264 -0.7995 -1.2054 31 1 1.6055 -1.7199 -1.2950 32 1 2.9222 -1.8430 -4.7317 33 1 3.1263 -0.7994 1.2058 34 1 1.6053 -1.7198 1.2953 35 1 1.9880 0.9874 2.3967 36 1 3.2115 -0.7048 3.6408 37 1 1.6902 -1.6247 3.7298 38 1 3.3865 -0.4357 6.0761 39 1 1.9971 0.1494 7.0227 40 1 1.9395 -1.4564 6.2574 41 1 4.1404 1.2350 5.4393 42 1 3.8995 0.9607 3.6972 43 1 5.1685 3.0566 4.1169 44 1 3.5980 3.3925 3.3487 45 1 4.2225 3.5940 6.3314 46 1 3.9815 4.9603 5.2152 47 1 2.3262 4.3183 7.7546 48 1 2.0845 5.7288 6.6961 49 1 0.7282 4.6263 7.0334 50 1 0.7193 2.3199 6.0508 51 1 2.3074 2.0185 6.7957 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602514523.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:50 Heat of formation + Delta-G solvation = -30.658698 kcal Electronic energy + Delta-G solvation = -23327.460446 eV Core-core repulsion = 20260.129965 eV Total energy + Delta-G solvation = -3067.330481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89804 -36.97142 -35.51470 -33.30023 -32.30556 -31.71599 -29.97042 -27.16308 -26.71678 -26.10268 -24.56949 -23.65927 -22.44371 -21.98307 -20.31445 -19.40882 -18.80329 -16.46544 -16.25529 -15.67246 -15.03739 -14.87462 -14.54156 -14.48257 -14.39769 -14.00480 -13.83165 -13.31365 -13.13040 -12.93791 -12.66378 -12.28450 -12.18617 -12.12225 -11.99424 -11.85392 -11.51735 -11.38878 -11.23035 -11.15625 -10.86178 -10.81824 -10.75675 -10.64916 -10.39799 -10.34710 -10.21863 -10.10071 -9.60960 -9.05972 -8.88329 -8.32981 -8.27703 -7.89746 -5.92603 -3.93238 3.36523 3.42597 3.46543 3.73476 4.43487 4.52281 4.54444 4.65112 4.75078 4.86854 5.03536 5.06639 5.16701 5.24499 5.28482 5.34847 5.39848 5.43241 5.46053 5.49116 5.53878 5.57177 5.64600 5.69500 5.80794 5.83252 5.86800 5.89259 5.92451 5.98367 6.03412 6.09160 6.17636 6.26769 6.28240 6.52099 6.66583 6.80655 7.02527 7.03634 7.13415 7.28841 7.30730 7.54489 7.75776 7.90216 7.96249 8.08487 8.53163 9.13413 9.69840 11.19020 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.003205 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.438856 B = 8733.342017 C = 9314.123808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.680 5.680 15 C 0.065 3.935 16 C 0.084 3.916 17 H 0.090 0.910 18 C -0.186 4.186 19 N -0.525 5.525 20 C 0.048 3.952 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.091 4.091 24 H 0.081 0.919 25 C -0.146 4.146 26 C 0.063 3.937 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.348 0.652 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.868 7.652 23.617 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.312 5.312 15 C -0.065 4.065 16 C -0.025 4.025 17 H 0.108 0.892 18 C -0.246 4.246 19 N -0.248 5.248 20 C -0.080 4.080 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.110 4.110 24 H 0.099 0.901 25 C -0.203 4.203 26 C -0.065 4.065 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.041 0.959 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.089 7.451 23.091 24.264 hybrid contribution 1.229 0.161 -0.228 1.260 sum 1.318 7.612 22.863 24.133 Atomic orbital electron populations 1.21570 0.95763 1.00408 1.00127 1.21170 0.95974 0.98845 0.93980 0.92930 1.19120 0.95811 0.95547 0.90544 1.21258 1.34374 1.08225 0.91004 0.92558 1.25023 0.95425 0.95087 0.99073 1.69970 1.39335 1.21228 1.23289 0.86636 0.78943 0.79802 0.82889 1.20794 1.21355 1.19862 1.22138 0.96770 0.97688 0.89940 1.60415 1.63890 1.06297 1.00583 1.21993 0.96905 0.97494 0.90078 1.21775 1.00437 0.86989 0.93252 0.89154 1.22454 1.01474 1.01717 0.98928 1.62071 1.12455 1.10405 1.39911 1.22176 0.88028 0.97431 1.00354 1.21596 1.00403 0.94547 0.99107 1.21628 0.95598 0.99741 0.98196 1.21177 0.96148 0.94679 0.98953 0.90106 1.21793 1.01289 0.99674 0.97591 1.22108 1.00382 0.92809 0.91235 0.93807 0.92944 0.94332 0.97054 0.96640 0.93169 0.96295 0.91917 0.83220 0.95862 0.91098 0.92615 0.92422 0.91918 0.95031 0.90589 0.91746 0.90744 0.92645 0.91971 0.93047 0.92547 0.92600 0.90930 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.71 2.48 -90.61 -0.22 -1.93 16 3 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 6 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 14 N -0.68 -10.31 5.95 -113.78 -0.68 -10.98 16 15 C 0.07 0.82 4.60 -3.83 -0.02 0.80 16 16 C 0.08 0.89 2.72 -67.71 -0.18 0.71 16 17 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 18 C -0.19 -1.66 8.50 37.16 0.32 -1.34 16 19 N -0.52 -5.53 3.83 -226.69 -0.87 -6.39 16 20 C 0.05 0.49 4.40 -3.84 -0.02 0.48 16 21 C -0.12 -1.14 6.09 -26.65 -0.16 -1.30 16 22 C -0.11 -0.96 5.29 -26.60 -0.14 -1.10 16 23 C -0.09 -0.78 2.89 -90.54 -0.26 -1.04 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 25 C -0.15 -1.03 9.20 37.16 0.34 -0.69 16 26 C 0.06 0.57 4.17 -3.83 -0.02 0.56 16 27 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 28 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.35 5.36 7.40 -39.29 -0.29 5.06 16 36 H 0.02 0.30 6.51 -51.93 -0.34 -0.04 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.51 6.63 -51.93 -0.34 0.16 16 39 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.03 0.32 6.71 -51.92 -0.35 -0.03 16 42 H 0.08 0.88 5.79 -51.93 -0.30 0.58 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.67 8.12 -51.92 -0.42 0.24 16 51 H 0.03 0.29 6.63 -51.93 -0.34 -0.06 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -29.37 379.36 -10.86 -40.23 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -10.18 Total: -0.23 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.57 Total: -18.65 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -0.81 Total: -44.08 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.37 -10.86 -40.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514523.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.574 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds