Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47623 * 2 1 4 4 C 1.53000 * 109.46817 * 240.00026 * 2 1 3 5 5 C 1.50704 * 109.46916 * 64.99982 * 4 2 1 6 6 H 1.07995 * 119.99816 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99993 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99961 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47175 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47087 * 120.00391 * 9 7 5 12 12 H 1.48500 * 109.47348 * 240.00513 * 9 7 5 13 13 C 1.52997 * 109.47343 * 120.00670 * 2 1 3 14 14 N 1.46902 * 109.46940 * 294.99437 * 13 2 1 15 15 C 1.46900 * 111.00332 * 179.97438 * 14 13 2 16 16 C 1.53000 * 109.47201 * 185.35117 * 15 14 13 17 17 H 1.08993 * 109.47128 * 303.62705 * 16 15 14 18 18 C 1.52998 * 109.47163 * 63.63001 * 16 15 14 19 19 N 1.46898 * 109.46948 * 183.62930 * 16 15 14 20 20 C 1.46847 * 111.00267 * 300.81863 * 19 16 15 21 21 C 1.53030 * 109.52625 * 185.84001 * 20 19 16 22 22 C 1.53122 * 109.27963 * 300.81658 * 21 20 19 23 23 C 1.53119 * 109.15825 * 57.65345 * 22 21 20 24 24 H 1.09001 * 109.50436 * 62.32697 * 23 22 21 25 25 C 1.53001 * 109.50329 * 182.40458 * 23 22 21 26 26 C 1.46850 * 111.00172 * 65.02551 * 19 16 15 27 27 H 1.09004 * 109.46896 * 299.99696 * 1 2 3 28 28 H 1.09001 * 109.47443 * 59.99381 * 1 2 3 29 29 H 1.08995 * 109.47623 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47514 * 185.00003 * 4 2 1 31 31 H 1.08999 * 109.47652 * 305.00710 * 4 2 1 32 32 H 0.97001 * 120.00267 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47418 * 174.99621 * 13 2 1 34 34 H 1.09004 * 109.47373 * 54.98943 * 13 2 1 35 35 H 1.00903 * 111.00395 * 303.95575 * 14 13 2 36 36 H 1.09000 * 109.46685 * 65.35277 * 15 14 13 37 37 H 1.09000 * 109.47160 * 305.35267 * 15 14 13 38 38 H 1.08998 * 109.47032 * 179.97438 * 18 16 15 39 39 H 1.09001 * 109.47232 * 300.00223 * 18 16 15 40 40 H 1.09006 * 109.47156 * 59.99551 * 18 16 15 41 41 H 1.08996 * 109.46591 * 65.81920 * 20 19 16 42 42 H 1.09011 * 109.45924 * 305.85285 * 20 19 16 43 43 H 1.09001 * 109.50435 * 180.87767 * 21 20 19 44 44 H 1.09007 * 109.50669 * 60.75920 * 21 20 19 45 45 H 1.08995 * 109.52314 * 297.75086 * 22 21 20 46 46 H 1.08999 * 109.52407 * 177.55401 * 22 21 20 47 47 H 1.09002 * 109.46847 * 60.00122 * 25 23 22 48 48 H 1.08994 * 109.47228 * 300.00055 * 25 23 22 49 49 H 1.08997 * 109.47067 * 180.02562 * 25 23 22 50 50 H 1.09001 * 109.46053 * 54.14022 * 26 19 16 51 51 H 1.09002 * 109.46303 * 294.17988 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0805 0.9746 -2.3756 7 6 1.9930 -0.4016 -3.7284 8 7 2.6761 -1.5186 -3.8513 9 14 1.4994 0.5635 -5.2496 10 1 0.7429 1.7752 -4.8432 11 1 2.7177 0.9683 -5.9959 12 1 0.6455 -0.2852 -6.1189 13 6 2.0400 -0.7214 1.2491 14 7 1.6515 0.0373 2.4456 15 6 2.1249 -0.6273 3.6672 16 6 1.5897 0.1163 4.8925 17 1 1.8934 1.1620 4.8441 18 6 0.0624 0.0293 4.9150 19 7 2.1331 -0.4954 6.1125 20 6 1.7596 -1.9128 6.2018 21 6 2.2161 -2.4781 7.5486 22 6 3.7342 -2.3223 7.6739 23 6 4.1011 -0.8428 7.5291 24 1 3.6418 -0.2732 8.3370 25 6 5.6216 -0.6850 7.5932 26 6 3.5899 -0.3249 6.1829 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1262 -0.7995 -1.2057 31 1 1.6052 -1.7198 -1.2953 32 1 2.9233 -1.8416 -4.7319 33 1 3.1263 -0.7997 1.2054 34 1 1.6053 -1.7199 1.2951 35 1 1.9883 0.9872 2.3967 36 1 3.2147 -0.6206 3.6854 37 1 1.7676 -1.6570 3.6823 38 1 -0.3188 0.5588 5.7882 39 1 -0.3408 0.4832 4.0097 40 1 -0.2413 -1.0164 4.9633 41 1 2.2388 -2.4663 5.3943 42 1 0.6772 -2.0093 6.1155 43 1 1.9525 -3.5341 7.6082 44 1 1.7265 -1.9342 8.3564 45 1 4.2254 -2.8979 6.8894 46 1 4.0582 -2.6841 8.6497 47 1 6.0803 -1.2537 6.7842 48 1 5.9855 -1.0573 8.5508 49 1 5.8822 0.3683 7.4905 50 1 3.8371 0.7320 6.0827 51 1 4.0607 -0.8858 5.3754 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602514524.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -32.696714 kcal Electronic energy + Delta-G solvation = -22997.431759 eV Core-core repulsion = 19930.012903 eV Total energy + Delta-G solvation = -3067.418856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.87692 -37.10986 -35.54977 -33.48443 -32.28691 -31.69942 -30.02930 -27.10406 -26.74116 -26.06292 -24.60035 -23.85107 -22.51472 -22.14813 -20.31674 -19.54615 -18.81103 -16.48208 -16.14182 -15.59294 -15.41698 -14.95393 -14.76853 -14.47252 -14.34266 -14.02001 -13.72840 -13.48940 -13.20173 -12.75307 -12.62662 -12.44607 -12.22866 -12.16250 -11.96208 -11.62211 -11.55812 -11.41480 -11.31533 -11.17551 -10.97476 -10.84604 -10.77897 -10.68121 -10.43149 -10.39037 -10.28544 -10.22511 -9.69644 -9.16003 -8.96368 -8.41198 -8.33108 -8.05837 -5.97567 -3.98583 3.32040 3.39603 3.43784 3.69184 4.41540 4.47298 4.53905 4.59718 4.62350 4.83051 4.92834 5.12860 5.15621 5.20253 5.27913 5.35401 5.38351 5.40710 5.49648 5.50299 5.54475 5.61489 5.66976 5.72628 5.77833 5.81956 5.85712 5.89936 5.94429 5.96741 6.01072 6.13947 6.16593 6.19842 6.36070 6.42065 6.55301 6.69422 6.93723 6.99194 7.04396 7.18889 7.21005 7.36808 7.64163 7.70467 7.85700 8.02815 8.46912 9.08116 9.64842 11.14073 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029146 B = 0.002723 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.435290 B =10278.702212 C =10675.054820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.680 5.680 15 C 0.028 3.972 16 C 0.085 3.915 17 H 0.079 0.921 18 C -0.134 4.134 19 N -0.529 5.529 20 C 0.047 3.953 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.089 4.089 24 H 0.077 0.923 25 C -0.147 4.147 26 C 0.056 3.944 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.021 0.979 34 H 0.064 0.936 35 H 0.336 0.664 36 H 0.023 0.977 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.035 0.965 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.055 0.945 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 0.421 24.747 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.311 5.311 15 C -0.104 4.104 16 C -0.023 4.023 17 H 0.097 0.903 18 C -0.191 4.191 19 N -0.253 5.253 20 C -0.080 4.080 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.107 4.107 24 H 0.095 0.905 25 C -0.205 4.205 26 C -0.072 4.072 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.153 0.847 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.276 0.261 25.060 25.063 hybrid contribution 1.266 0.101 -1.770 2.179 sum 1.542 0.361 23.290 23.343 Atomic orbital electron populations 1.21578 0.95677 1.00514 1.00140 1.21188 0.96026 0.98860 0.93980 0.92863 1.19126 0.95852 0.95586 0.90518 1.21278 1.34455 1.08255 0.90963 0.92496 1.25031 0.95354 0.95113 0.99134 1.69976 1.39209 1.21289 1.23255 0.86572 0.78239 0.80145 0.83273 1.19730 1.21127 1.21071 1.22142 0.96983 0.97664 0.89569 1.60479 1.63741 1.05587 1.01281 1.22646 0.96815 0.99443 0.91477 1.21687 0.96246 0.98158 0.86250 0.90264 1.21748 0.93495 1.01734 1.02163 1.62261 1.11102 1.15133 1.36819 1.22178 1.01114 0.88075 0.96657 1.21587 0.95816 1.00313 0.97741 1.21650 0.96122 0.96087 1.01558 1.21156 0.95381 0.96363 0.97831 0.90482 1.21804 0.95208 1.01760 1.01738 1.22164 0.87711 1.00808 0.96469 0.93907 0.92799 0.94244 0.97023 0.96605 0.93165 0.96051 0.91748 0.84669 0.95840 0.91239 0.92845 0.90648 0.93053 0.94696 0.90192 0.91703 0.91234 0.92313 0.91993 0.92767 0.92546 0.92577 0.90986 0.94624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.43 8.41 -34.44 -0.29 -14.72 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C 0.07 1.14 5.07 -3.82 -0.02 1.12 16 14 N -0.68 -9.71 5.32 -113.78 -0.61 -10.31 16 15 C 0.03 0.34 4.37 -3.82 -0.02 0.33 16 16 C 0.09 0.92 2.63 -67.71 -0.18 0.75 16 17 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 18 C -0.13 -1.44 8.87 37.16 0.33 -1.11 16 19 N -0.53 -5.38 4.64 -226.70 -1.05 -6.44 16 20 C 0.05 0.46 4.63 -3.84 -0.02 0.44 16 21 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 22 C -0.12 -0.93 5.29 -26.61 -0.14 -1.07 16 23 C -0.09 -0.73 2.88 -90.54 -0.26 -0.99 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 C -0.15 -1.06 9.20 37.16 0.34 -0.72 16 26 C 0.06 0.54 4.31 -3.83 -0.02 0.52 16 27 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 28 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.34 4.58 8.79 -39.29 -0.35 4.23 16 36 H 0.02 0.31 6.48 -51.93 -0.34 -0.03 16 37 H 0.07 0.93 6.71 -51.93 -0.35 0.58 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 40 H 0.05 0.55 6.30 -51.93 -0.33 0.23 16 41 H 0.03 0.37 6.70 -51.93 -0.35 0.02 16 42 H 0.08 0.77 6.03 -51.92 -0.31 0.46 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 51 H 0.04 0.38 6.65 -51.93 -0.35 0.03 16 LS Contribution 380.85 15.07 5.74 5.74 Total: -1.00 -29.12 380.85 -10.96 -40.08 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -10.21 Total: -0.93 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -0.55 Total: -18.47 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.92 Total: -43.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.12 -10.96 -40.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514524.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.387 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds