Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47345 * 2 1 4 4 C 1.52999 * 109.47497 * 239.99642 * 2 1 3 5 5 C 1.50703 * 109.46913 * 65.00259 * 4 2 1 6 6 H 1.07998 * 120.00122 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00002 * 180.02562 * 5 4 2 8 8 N 1.31524 * 119.99802 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47049 * 59.99734 * 9 7 5 11 11 H 1.48503 * 109.47061 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46780 * 299.99942 * 9 7 5 13 13 C 1.53005 * 109.47157 * 119.99376 * 2 1 3 14 14 N 1.46899 * 109.47298 * 295.00583 * 13 2 1 15 15 C 1.46898 * 110.99978 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.46810 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.47595 * 55.00275 * 16 15 14 18 18 C 1.53000 * 109.47333 * 294.99819 * 16 15 14 19 19 C 1.53005 * 109.46689 * 175.00283 * 16 15 14 20 20 N 1.46908 * 109.46989 * 185.09531 * 19 16 15 21 21 C 1.46845 * 110.99936 * 199.97596 * 20 19 16 22 22 C 1.53042 * 109.52129 * 174.16008 * 21 20 19 23 23 C 1.53119 * 109.27986 * 59.17558 * 22 21 20 24 24 C 1.53113 * 109.15986 * 302.34727 * 23 22 21 25 25 C 1.46846 * 111.00038 * 75.76257 * 20 19 16 26 26 H 1.09006 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47814 * 300.00178 * 1 2 3 28 28 H 1.09009 * 109.47369 * 60.00735 * 1 2 3 29 29 H 1.09005 * 109.46979 * 184.99980 * 4 2 1 30 30 H 1.08999 * 109.46970 * 304.99925 * 4 2 1 31 31 H 0.96990 * 119.99739 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.46370 * 55.00236 * 13 2 1 33 33 H 1.08996 * 109.47349 * 175.00361 * 13 2 1 34 34 H 1.00898 * 111.00222 * 303.95311 * 14 13 2 35 35 H 1.08992 * 109.47322 * 299.99942 * 15 14 13 36 36 H 1.09005 * 109.46892 * 60.00008 * 15 14 13 37 37 H 1.08999 * 109.46887 * 185.20715 * 18 16 15 38 38 H 1.08994 * 109.47582 * 305.21122 * 18 16 15 39 39 H 1.09003 * 109.46650 * 65.21255 * 18 16 15 40 40 H 1.08997 * 109.46925 * 305.08868 * 19 16 15 41 41 H 1.08993 * 109.47368 * 65.09544 * 19 16 15 42 42 H 1.09005 * 109.45750 * 294.17260 * 21 20 19 43 43 H 1.08993 * 109.46542 * 54.14066 * 21 20 19 44 44 H 1.09000 * 109.50213 * 299.23357 * 22 21 20 45 45 H 1.09003 * 109.49684 * 179.11828 * 22 21 20 46 46 H 1.08995 * 109.52309 * 182.44021 * 23 22 21 47 47 H 1.09004 * 109.52037 * 62.25037 * 23 22 21 48 48 H 1.08997 * 109.50293 * 297.71082 * 24 23 22 49 49 H 1.09004 * 109.50448 * 177.59750 * 24 23 22 50 50 H 1.09002 * 109.46157 * 305.85496 * 25 20 19 51 51 H 1.08992 * 109.46619 * 65.82617 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3758 7 6 1.9925 -0.4023 -3.7283 8 7 2.6757 -1.5195 -3.8510 9 14 1.4978 0.5620 -5.2497 10 1 2.0898 1.9224 -5.1877 11 1 1.9930 -0.1381 -6.4622 12 1 0.0178 0.6684 -5.3087 13 6 2.0399 -0.7211 1.2494 14 7 1.6512 0.0376 2.4457 15 6 2.1246 -0.6269 3.6673 16 6 1.7021 0.1913 4.8892 17 1 0.6232 0.3450 4.8683 18 6 2.4110 1.5469 4.8652 19 6 2.0854 -0.5621 6.1646 20 7 1.5724 0.1633 7.3346 21 6 2.2893 -0.2310 8.5541 22 6 1.8314 0.6452 9.7223 23 6 0.3221 0.4781 9.9184 24 6 -0.3976 0.8488 8.6188 25 6 0.1247 -0.0333 7.4826 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 3.1264 -0.7995 -1.2054 30 1 1.6054 -1.7199 -1.2950 31 1 2.9230 -1.8424 -4.7315 32 1 1.6053 -1.7197 1.2952 33 1 3.1262 -0.7993 1.2058 34 1 1.9879 0.9874 2.3967 35 1 1.6903 -1.6246 3.7298 36 1 3.2115 -0.7048 3.6406 37 1 2.1828 2.0925 5.7808 38 1 3.4876 1.3929 4.7928 39 1 2.0675 2.1213 4.0048 40 1 1.6534 -1.5625 6.1393 41 1 3.1708 -0.6364 6.2304 42 1 2.0762 -1.2761 8.7786 43 1 3.3611 -0.1034 8.4026 44 1 2.0567 1.6892 9.5043 45 1 2.3523 0.3419 10.6305 46 1 -0.0157 1.1332 10.7215 47 1 0.1006 -0.5580 10.1747 48 1 -0.2075 1.8959 8.3835 49 1 -1.4695 0.6910 8.7386 50 1 -0.3755 0.2379 6.5529 51 1 -0.0782 -1.0793 7.7122 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602518778.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = -37.892998 kcal Electronic energy + Delta-G solvation = -22457.899335 eV Core-core repulsion = 19390.255151 eV Total energy + Delta-G solvation = -3067.644184 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.45640 -37.39357 -35.59385 -33.64406 -32.29074 -31.18163 -30.87182 -26.95908 -26.71774 -25.95929 -24.34015 -23.41145 -22.85739 -21.87894 -20.04170 -19.90381 -18.92886 -16.50491 -16.29974 -15.67614 -15.18977 -15.12087 -14.78883 -14.56373 -14.14996 -14.06808 -13.84212 -13.68227 -13.31655 -12.87163 -12.70660 -12.56631 -12.36393 -12.07211 -11.90720 -11.51907 -11.47015 -11.33190 -11.22741 -10.98912 -10.89531 -10.81371 -10.78803 -10.70245 -10.60525 -10.38366 -10.25594 -10.14577 -9.65419 -9.10111 -8.92064 -8.52554 -8.29704 -8.03890 -5.94668 -3.95677 3.36537 3.40595 3.43339 3.58560 4.42024 4.49662 4.51112 4.58324 4.63855 4.84706 4.92880 5.03072 5.09390 5.15276 5.20057 5.29484 5.34196 5.40864 5.45240 5.48156 5.57226 5.61696 5.66930 5.69461 5.73152 5.80426 5.80789 5.88323 5.93180 6.00403 6.05237 6.07473 6.20790 6.30904 6.38940 6.46981 6.60669 6.73887 6.86360 6.89223 7.06602 7.22777 7.24731 7.44652 7.71060 7.75292 7.89529 8.05806 8.49979 9.10544 9.67365 11.16856 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.047001 B = 0.002268 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.589375 B =12342.502412 C =12531.117867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.687 5.687 15 C 0.063 3.937 16 C -0.083 4.083 17 H 0.078 0.922 18 C -0.140 4.140 19 C 0.061 3.939 20 N -0.534 5.534 21 C 0.056 3.944 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.117 4.117 25 C 0.054 3.946 26 H 0.038 0.962 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.337 0.663 35 H 0.065 0.935 36 H 0.024 0.976 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 3.094 27.717 27.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.318 5.318 15 C -0.067 4.067 16 C -0.102 4.102 17 H 0.097 0.903 18 C -0.197 4.197 19 C -0.068 4.068 20 N -0.259 5.259 21 C -0.072 4.072 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.074 4.074 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.156 0.844 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.097 0.903 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.705 3.180 27.542 27.856 hybrid contribution 0.665 -0.363 -0.878 1.160 sum -2.040 2.816 26.664 26.890 Atomic orbital electron populations 1.21581 0.95754 1.00508 1.00104 1.21195 0.95979 0.98884 0.94068 0.92897 1.19119 0.95878 0.95561 0.90469 1.21209 1.34560 1.08268 0.91001 0.92616 1.25034 0.95388 0.95124 0.99103 1.69961 1.39106 1.21234 1.23438 0.86679 0.78896 0.80082 0.82464 1.20325 1.21407 1.20271 1.22140 0.97059 0.97686 0.89584 1.60536 1.64032 1.05843 1.01426 1.21944 0.97012 0.97853 0.89935 1.21103 1.01379 0.95508 0.92182 0.90326 1.21733 0.99325 0.96606 1.02081 1.22123 0.99829 0.94785 0.90033 1.61846 1.03613 1.57570 1.02829 1.22088 0.98358 0.96786 0.90013 1.21581 0.95814 1.00924 0.97113 1.21580 0.95537 1.01190 0.97632 1.21582 0.99048 1.00659 0.94184 1.22137 0.88291 0.97608 0.99397 0.94237 0.93940 0.92828 0.96972 0.96597 0.93080 0.91713 0.95917 0.84439 0.91614 0.95744 0.91515 0.93650 0.92852 0.94668 0.91068 0.95218 0.90881 0.91068 0.91791 0.91951 0.92467 0.91047 0.91686 0.90283 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.43 8.89 37.15 0.33 -2.10 16 2 C -0.08 -1.72 2.48 -90.62 -0.22 -1.94 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.55 8.41 -34.44 -0.29 -14.84 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.14 5.07 -3.82 -0.02 1.12 16 14 N -0.69 -10.19 5.95 -113.78 -0.68 -10.87 16 15 C 0.06 0.78 5.14 -3.82 -0.02 0.76 16 16 C -0.08 -0.87 2.65 -90.62 -0.24 -1.11 16 17 H 0.08 0.91 6.70 -51.93 -0.35 0.56 16 18 C -0.14 -1.46 8.79 37.16 0.33 -1.13 16 19 C 0.06 0.57 4.39 -3.82 -0.02 0.55 16 20 N -0.53 -4.75 3.96 -234.67 -0.93 -5.67 16 21 C 0.06 0.43 5.43 -3.83 -0.02 0.41 16 22 C -0.12 -0.79 6.09 -26.65 -0.16 -0.95 16 23 C -0.12 -0.80 6.00 -26.61 -0.16 -0.96 16 24 C -0.12 -0.85 6.09 -26.65 -0.16 -1.02 16 25 C 0.05 0.46 5.29 -3.83 -0.02 0.44 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 28 H 0.05 1.13 6.95 -51.92 -0.36 0.77 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.34 4.83 7.10 -39.29 -0.28 4.55 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.69 7.62 -51.93 -0.40 0.30 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.58 6.92 -51.93 -0.36 0.22 16 40 H 0.04 0.34 8.00 -51.93 -0.42 -0.08 16 41 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 42 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.55 7.93 -51.93 -0.41 0.13 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.72 6.64 -51.93 -0.35 0.38 16 51 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -29.41 385.87 -11.39 -40.80 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -10.41 Total: -1.72 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -0.90 Total: -18.72 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -0.87 Total: -43.12 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.41 -11.39 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602518778.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.912 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds