Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09010 * 109.46777 * 2 1 4 4 C 1.52995 * 109.47162 * 119.99593 * 2 1 3 5 5 C 1.50697 * 109.47450 * 295.00298 * 4 2 1 6 6 H 1.08003 * 119.99853 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99748 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99822 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47018 * 60.00199 * 9 7 5 11 11 H 1.48502 * 109.46490 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46964 * 299.99980 * 9 7 5 13 13 C 1.52997 * 109.47297 * 240.00097 * 2 1 3 14 14 N 1.46898 * 109.47316 * 65.00024 * 13 2 1 15 15 C 1.46895 * 111.00128 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47350 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.47323 * 54.99806 * 16 15 14 18 18 C 1.52999 * 109.47268 * 294.99859 * 16 15 14 19 19 C 1.52998 * 109.47314 * 174.99954 * 16 15 14 20 20 N 1.46902 * 109.47208 * 183.83007 * 19 16 15 21 21 C 1.46845 * 110.99973 * 200.02355 * 20 19 16 22 22 C 1.53038 * 109.52579 * 174.16039 * 21 20 19 23 23 C 1.53122 * 109.27919 * 59.17590 * 22 21 20 24 24 C 1.53126 * 109.15835 * 302.34908 * 23 22 21 25 25 C 1.46846 * 111.00200 * 75.81197 * 20 19 16 26 26 H 1.09000 * 109.46619 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47227 * 299.99951 * 1 2 3 28 28 H 1.08997 * 109.47212 * 60.00416 * 1 2 3 29 29 H 1.09002 * 109.47055 * 55.00628 * 4 2 1 30 30 H 1.09000 * 109.47239 * 175.00166 * 4 2 1 31 31 H 0.97005 * 119.99596 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47221 * 304.99901 * 13 2 1 33 33 H 1.09003 * 109.46996 * 184.99757 * 13 2 1 34 34 H 1.00894 * 111.00430 * 56.04325 * 14 13 2 35 35 H 1.09000 * 109.47563 * 59.99395 * 15 14 13 36 36 H 1.09001 * 109.47405 * 299.99513 * 15 14 13 37 37 H 1.08999 * 109.47636 * 178.57386 * 18 16 15 38 38 H 1.09009 * 109.47062 * 298.57958 * 18 16 15 39 39 H 1.09002 * 109.47007 * 58.57032 * 18 16 15 40 40 H 1.09005 * 109.47353 * 63.82612 * 19 16 15 41 41 H 1.08998 * 109.47471 * 303.82676 * 19 16 15 42 42 H 1.09000 * 109.46308 * 294.17124 * 21 20 19 43 43 H 1.09003 * 109.46978 * 54.13963 * 21 20 19 44 44 H 1.09005 * 109.50017 * 299.23748 * 22 21 20 45 45 H 1.09001 * 109.50462 * 179.12028 * 22 21 20 46 46 H 1.08997 * 109.52231 * 182.44626 * 23 22 21 47 47 H 1.09000 * 109.52009 * 62.24945 * 23 22 21 48 48 H 1.08996 * 109.50044 * 297.70931 * 24 23 22 49 49 H 1.09003 * 109.49786 * 177.59502 * 24 23 22 50 50 H 1.08998 * 109.45686 * 305.85138 * 25 20 19 51 51 H 1.08995 * 109.45987 * 65.82035 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9923 -0.4021 3.7284 8 7 2.6755 -1.5191 3.8512 9 14 1.4975 0.5623 5.2497 10 1 0.0174 0.6687 5.3086 11 1 1.9916 -0.1383 6.4622 12 1 2.0895 1.9228 5.1876 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1248 -0.6271 -3.6671 16 6 1.7015 0.1903 -4.8892 17 1 2.0611 1.2139 -4.7841 18 6 0.1753 0.1945 -4.9963 19 6 2.2996 -0.4331 -6.1520 20 7 1.9696 0.4025 -7.3142 21 6 2.0935 -0.3602 -8.5629 22 6 1.6044 0.4941 -9.7347 23 6 2.4413 1.7740 -9.8113 24 6 2.3337 2.5252 -8.4813 25 6 2.8018 1.6121 -7.3460 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6055 -1.7197 1.2952 30 1 3.1263 -0.7993 1.2056 31 1 2.9222 -1.8423 4.7319 32 1 1.6055 -1.7197 -1.2952 33 1 3.1264 -0.7994 -1.2055 34 1 1.9881 0.9873 -2.3967 35 1 1.6906 -1.6249 -3.7296 36 1 3.2117 -0.7050 -3.6405 37 1 -0.1274 0.7977 -5.8522 38 1 -0.1826 -0.8269 -5.1268 39 1 -0.2517 0.6154 -4.0860 40 1 1.8876 -1.4323 -6.2941 41 1 3.3826 -0.4983 -6.0471 42 1 3.1375 -0.6303 -8.7215 43 1 1.4903 -1.2657 -8.4969 44 1 0.5564 0.7531 -9.5836 45 1 1.7110 -0.0667 -10.6633 46 1 2.0682 2.4055 -10.6175 47 1 3.4835 1.5169 -10.0011 48 1 1.2972 2.8161 -8.3106 49 1 2.9615 3.4156 -8.5145 50 1 2.7128 2.1390 -6.3960 51 1 3.8424 1.3326 -7.5101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602518779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -37.824138 kcal Electronic energy + Delta-G solvation = -22458.430128 eV Core-core repulsion = 19390.788929 eV Total energy + Delta-G solvation = -3067.641198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.45350 -37.34208 -35.58825 -33.64067 -32.28643 -31.19597 -30.90908 -26.94877 -26.58382 -25.94293 -24.27931 -23.42670 -22.86282 -21.90976 -20.15388 -19.94296 -18.85587 -16.42905 -16.29289 -15.60391 -15.23963 -15.03424 -14.74150 -14.56053 -14.35625 -14.03004 -13.85822 -13.59273 -13.38818 -13.06552 -12.59565 -12.38035 -12.16578 -12.07719 -11.80341 -11.54063 -11.51597 -11.34786 -11.18462 -11.00858 -10.91030 -10.81528 -10.79511 -10.67818 -10.56381 -10.41466 -10.25257 -10.14418 -9.65257 -9.09999 -8.92259 -8.52170 -8.29963 -8.02762 -5.94871 -3.95844 3.36355 3.40451 3.43161 3.58061 4.41869 4.49049 4.50574 4.56197 4.64128 4.80210 4.93150 5.06570 5.11511 5.16368 5.20829 5.29897 5.36722 5.40735 5.45400 5.49034 5.56328 5.61685 5.64223 5.70251 5.74630 5.80196 5.86187 5.88987 5.91751 6.03416 6.07976 6.20646 6.28071 6.35308 6.46985 6.55935 6.60687 6.74263 6.86274 6.88549 7.06836 7.23313 7.24955 7.44028 7.70444 7.74620 7.89359 8.05607 8.49838 9.10381 9.67209 11.16639 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.044526 B = 0.002264 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.699731 B =12366.140607 C =12465.760446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.065 3.935 14 N -0.684 5.684 15 C 0.063 3.937 16 C -0.081 4.081 17 H 0.066 0.934 18 C -0.126 4.126 19 C 0.060 3.940 20 N -0.533 5.533 21 C 0.056 3.944 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.117 4.117 25 C 0.054 3.946 26 H 0.039 0.961 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.335 0.665 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.077 0.923 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 4.255 -27.533 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.314 5.314 15 C -0.068 4.068 16 C -0.100 4.100 17 H 0.084 0.916 18 C -0.183 4.183 19 C -0.068 4.068 20 N -0.257 5.257 21 C -0.072 4.072 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.074 4.074 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.152 0.848 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -1.400 3.984 -27.389 27.713 hybrid contribution 1.742 0.280 0.926 1.993 sum 0.342 4.264 -26.463 26.807 Atomic orbital electron populations 1.21579 0.95718 1.00528 1.00109 1.21191 0.96004 0.98849 0.94047 0.92921 1.19117 0.95851 0.95578 0.90488 1.21208 1.34582 1.08250 0.91002 0.92621 1.25031 0.95380 0.95126 0.99103 1.69959 1.39106 1.21236 1.23428 0.86683 0.78912 0.80075 0.82472 1.20260 1.21406 1.20331 1.22135 0.96988 0.97720 0.89560 1.60483 1.63949 1.05576 1.01388 1.21950 0.96570 0.98327 0.89910 1.21083 0.97647 0.99080 0.92185 0.91579 1.21568 0.93839 1.01210 1.01726 1.22149 0.97837 0.96572 0.90260 1.61844 1.55049 1.06797 1.02058 1.22089 0.99081 0.96430 0.89630 1.21583 1.00630 0.96110 0.97120 1.21582 0.99883 0.96908 0.97560 1.21583 1.02312 0.97533 0.94046 1.22125 0.94069 0.91687 0.99502 0.94226 0.92868 0.93886 0.96591 0.97012 0.93080 0.91667 0.96000 0.84753 0.91308 0.96096 0.92592 0.93791 0.91886 0.90876 0.94958 0.95269 0.90807 0.91021 0.91775 0.91932 0.92489 0.90999 0.91722 0.90495 0.95247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16 3 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.53 8.41 -34.44 -0.29 -14.82 16 6 H 0.06 1.54 7.06 -52.48 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.06 1.14 5.07 -3.83 -0.02 1.12 16 14 N -0.68 -9.94 5.38 -113.79 -0.61 -10.55 16 15 C 0.06 0.77 5.07 -3.83 -0.02 0.75 16 16 C -0.08 -0.85 2.58 -90.62 -0.23 -1.08 16 17 H 0.07 0.72 6.73 -51.93 -0.35 0.37 16 18 C -0.13 -1.41 8.96 37.16 0.33 -1.08 16 19 C 0.06 0.57 4.41 -3.82 -0.02 0.55 16 20 N -0.53 -4.77 4.01 -234.67 -0.94 -5.72 16 21 C 0.06 0.44 5.43 -3.83 -0.02 0.42 16 22 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 23 C -0.12 -0.80 6.00 -26.60 -0.16 -0.96 16 24 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 25 C 0.05 0.46 5.29 -3.84 -0.02 0.44 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.68 8.73 -39.29 -0.34 4.33 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.62 7.76 -51.93 -0.40 0.22 16 38 H 0.04 0.50 8.14 -51.92 -0.42 0.07 16 39 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 40 H 0.07 0.68 7.79 -51.93 -0.40 0.27 16 41 H 0.03 0.31 8.00 -51.93 -0.42 -0.10 16 42 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.68 6.66 -51.93 -0.35 0.33 16 51 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -29.34 388.02 -11.41 -40.75 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -10.53 Total: -2.10 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -0.89 Total: -18.59 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: -0.82 Total: -42.82 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.34 -11.41 -40.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602518779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.924 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds