Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47072 * 2 1 4 4 C 1.53000 * 109.46923 * 239.99763 * 2 1 3 5 5 C 1.50697 * 109.47271 * 65.00204 * 4 2 1 6 6 H 1.08002 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99785 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00587 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99787 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46980 * 59.99961 * 9 7 5 11 11 H 1.48498 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47352 * 300.00043 * 9 7 5 13 13 C 1.53004 * 109.46778 * 119.99658 * 2 1 3 14 14 N 1.46899 * 109.47216 * 294.99777 * 13 2 1 15 15 C 1.46894 * 111.00003 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47351 * 185.35438 * 15 14 13 17 17 H 1.08995 * 109.47282 * 65.10760 * 16 15 14 18 18 C 1.53000 * 109.47212 * 185.10659 * 16 15 14 19 19 N 1.46905 * 109.46976 * 305.10518 * 16 15 14 20 20 C 1.46841 * 110.99857 * 175.50648 * 19 16 15 21 21 C 1.53043 * 109.52223 * 185.84399 * 20 19 16 22 22 C 1.53126 * 109.27677 * 300.82260 * 21 20 19 23 23 C 1.52998 * 109.52271 * 177.55899 * 22 21 20 24 24 C 1.53114 * 109.15910 * 57.65178 * 22 21 20 25 25 C 1.46847 * 111.00009 * 299.72241 * 19 16 15 26 26 H 1.09007 * 109.47485 * 300.00184 * 1 2 3 27 27 H 1.08997 * 109.47556 * 60.00223 * 1 2 3 28 28 H 1.08997 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46740 * 185.00208 * 4 2 1 30 30 H 1.09000 * 109.47108 * 304.99695 * 4 2 1 31 31 H 0.96998 * 120.00855 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.46646 * 175.00239 * 13 2 1 33 33 H 1.08989 * 109.47525 * 55.00199 * 13 2 1 34 34 H 1.00901 * 110.99913 * 303.95876 * 14 13 2 35 35 H 1.09005 * 109.47311 * 305.35501 * 15 14 13 36 36 H 1.08998 * 109.47312 * 65.35103 * 15 14 13 37 37 H 1.08991 * 109.47435 * 299.99747 * 18 16 15 38 38 H 1.09004 * 109.47086 * 59.99955 * 18 16 15 39 39 H 1.09000 * 109.47172 * 179.97438 * 18 16 15 40 40 H 1.09003 * 109.46650 * 305.85687 * 20 19 16 41 41 H 1.09000 * 109.46285 * 65.82858 * 20 19 16 42 42 H 1.08992 * 109.50337 * 180.88652 * 21 20 19 43 43 H 1.08997 * 109.50547 * 60.75958 * 21 20 19 44 44 H 1.09004 * 109.52058 * 297.75294 * 22 21 20 45 45 H 1.08995 * 109.46953 * 300.31654 * 23 22 21 46 46 H 1.08998 * 109.46891 * 60.32010 * 23 22 21 47 47 H 1.09001 * 109.46706 * 180.31213 * 23 22 21 48 48 H 1.09002 * 109.50279 * 182.40855 * 24 22 21 49 49 H 1.08999 * 109.50614 * 62.29069 * 24 22 21 50 50 H 1.08998 * 109.45843 * 294.17460 * 25 19 16 51 51 H 1.08991 * 109.46411 * 54.14208 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4019 -3.7282 8 7 2.6772 -1.5184 -3.8510 9 14 1.4985 0.5624 -5.2496 10 1 2.0896 1.9233 -5.1871 11 1 1.9946 -0.1370 -6.4620 12 1 0.0185 0.6679 -5.3093 13 6 2.0399 -0.7212 1.2493 14 7 1.6513 0.0376 2.4457 15 6 2.1256 -0.6263 3.6672 16 6 1.5904 0.1173 4.8925 17 1 0.5042 0.0322 4.9233 18 6 2.1861 -0.4956 6.1615 19 7 1.9685 1.5344 4.8091 20 6 1.3813 2.3017 5.9149 21 6 1.6737 3.7907 5.7161 22 6 3.1889 4.0064 5.6685 23 6 3.4871 5.4844 5.4092 24 6 3.7819 3.1589 4.5395 25 6 3.4284 1.6883 4.7723 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7199 -1.2951 31 1 2.9245 -1.8414 -4.7316 32 1 3.1262 -0.7994 1.2057 33 1 1.6054 -1.7197 1.2953 34 1 1.9881 0.9874 2.3966 35 1 1.7691 -1.6563 3.6828 36 1 3.2154 -0.6188 3.6850 37 1 1.9056 -1.5470 6.2235 38 1 3.2723 -0.4106 6.1307 39 1 1.8051 0.0344 7.0345 40 1 0.3031 2.1428 5.9349 41 1 1.8148 1.9692 6.8581 42 1 1.2512 4.3583 6.5452 43 1 1.2287 4.1271 4.7798 44 1 3.6296 3.7062 6.6192 45 1 3.0433 5.7834 4.4596 46 1 3.0646 6.0868 6.2134 47 1 4.5658 5.6360 5.3700 48 1 4.8656 3.2752 4.5279 49 1 3.3700 3.4854 3.5846 50 1 3.8523 1.3586 5.7209 51 1 3.8370 1.0839 3.9626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602527140.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -47.923761 kcal Electronic energy + Delta-G solvation = -23279.977999 eV Core-core repulsion = 20211.898848 eV Total energy + Delta-G solvation = -3068.079151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64088 -38.30283 -36.80579 -35.07868 -33.63937 -31.73879 -31.63559 -28.92153 -28.07026 -27.47678 -25.68978 -24.21513 -23.82214 -23.23020 -21.37924 -20.63741 -20.01665 -18.46272 -17.32684 -16.69260 -16.44876 -15.89888 -15.76511 -15.48650 -15.45533 -15.22600 -14.87438 -14.60381 -14.23408 -13.97797 -13.87000 -13.44795 -13.28539 -13.26163 -13.06747 -13.01586 -12.72549 -12.65505 -12.58121 -12.46779 -12.19471 -12.18382 -12.12786 -11.95214 -11.61145 -11.50937 -11.45321 -11.08788 -11.07213 -11.05382 -10.84153 -10.51824 -9.21987 -9.03956 -8.16136 -6.25404 1.40708 1.43859 1.51478 2.43274 2.96546 3.16992 3.35878 3.86910 3.90054 3.92943 4.04851 4.16084 4.24258 4.37050 4.40199 4.41622 4.42307 4.49444 4.57116 4.63097 4.66586 4.75025 4.79409 4.83323 4.86099 4.89254 4.93301 4.98008 5.00080 5.05624 5.06460 5.11279 5.20250 5.27435 5.31215 5.32117 5.35200 5.37546 5.49094 5.52638 5.58567 5.60262 5.83443 5.90466 6.14007 6.28263 6.29613 6.37159 6.65981 6.90359 7.42742 8.95859 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.003288 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.500663 B = 8513.856329 C = 9332.465528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.072 4.072 3 H 0.049 0.951 4 C 0.034 3.966 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.077 3.923 14 N -0.674 5.674 15 C 0.067 3.933 16 C 0.091 3.909 17 H 0.085 0.915 18 C -0.178 4.178 19 N -0.535 5.535 20 C 0.058 3.942 21 C -0.108 4.108 22 C -0.089 4.089 23 C -0.144 4.144 24 C -0.112 4.112 25 C 0.053 3.947 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.034 0.966 29 H -0.016 1.016 30 H -0.011 1.011 31 H 0.262 0.738 32 H 0.011 0.989 33 H 0.059 0.941 34 H 0.347 0.653 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.039 0.961 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 9.068 24.730 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.192 1.192 13 C -0.052 4.052 14 N -0.305 5.305 15 C -0.063 4.063 16 C -0.017 4.017 17 H 0.103 0.897 18 C -0.238 4.238 19 N -0.260 5.260 20 C -0.070 4.070 21 C -0.146 4.146 22 C -0.107 4.107 23 C -0.202 4.202 24 C -0.150 4.150 25 C -0.075 4.075 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.002 0.998 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.078 0.922 34 H 0.166 0.834 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.057 0.943 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.709 8.871 24.202 25.786 hybrid contribution 1.370 -0.210 -0.551 1.491 sum 0.661 8.661 23.650 25.195 Atomic orbital electron populations 1.21449 0.94649 1.00246 1.00373 1.20984 0.96732 0.98176 0.93219 0.93244 1.19000 0.93935 0.94659 0.92780 1.21619 1.34437 1.08607 0.92121 0.92154 1.25956 0.95238 0.96109 1.02653 1.70092 1.40284 1.23003 1.24334 0.85559 0.78970 0.78772 0.78114 1.19238 1.20960 1.19190 1.21842 0.96050 0.97357 0.89972 1.60345 1.63827 1.05995 1.00368 1.22031 0.96581 0.97970 0.89671 1.21647 1.00406 0.86794 0.92891 0.89712 1.22366 1.01236 1.02086 0.98084 1.62048 1.09678 1.09145 1.45099 1.22078 0.99542 0.93771 0.91580 1.21630 0.95651 0.95102 1.02240 1.21138 0.95785 0.95580 0.98224 1.21790 1.01511 0.95169 1.01689 1.21647 1.00284 0.93919 0.99108 1.22093 0.88230 0.97179 0.99978 0.91559 0.94514 0.94672 0.99774 0.99224 0.92936 0.97128 0.92201 0.83376 0.91018 0.95870 0.91357 0.92682 0.91583 0.90800 0.94336 0.90467 0.92249 0.91343 0.93187 0.91961 0.92557 0.91311 0.92390 0.94324 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.89 71.98 0.64 -3.75 16 2 C -0.07 -3.09 2.48 -10.79 -0.03 -3.11 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.03 1.84 4.45 29.85 0.13 1.97 16 5 C -0.53 -30.73 8.41 25.60 0.22 -30.51 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.28 13.28 21.44 0.28 -57.99 16 9 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.08 2.79 5.07 86.30 0.44 3.22 16 14 N -0.67 -19.92 5.89 -513.91 -3.03 -22.95 16 15 C 0.07 1.61 4.72 86.30 0.41 2.02 16 16 C 0.09 1.79 2.66 44.91 0.12 1.91 16 17 H 0.08 1.77 8.09 -2.39 -0.02 1.76 16 18 C -0.18 -2.79 8.50 71.98 0.61 -2.17 16 19 N -0.54 -10.48 3.83 -871.13 -3.34 -13.82 16 20 C 0.06 0.95 5.01 86.33 0.43 1.38 16 21 C -0.11 -1.66 5.38 30.65 0.16 -1.50 16 22 C -0.09 -1.33 2.79 -10.71 -0.03 -1.36 16 23 C -0.14 -1.98 9.20 71.98 0.66 -1.32 16 24 C -0.11 -2.00 5.38 30.64 0.16 -1.84 16 25 C 0.05 1.01 4.54 86.33 0.39 1.40 16 26 H 0.07 2.34 7.75 -2.38 -0.02 2.32 16 27 H 0.04 1.55 6.95 -2.39 -0.02 1.54 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.35 10.45 7.94 -89.69 -0.71 9.74 16 35 H 0.07 1.72 8.13 -2.38 -0.02 1.70 16 36 H 0.02 0.57 6.56 -2.39 -0.02 0.55 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 0.88 6.53 -2.38 -0.02 0.87 16 39 H 0.07 0.92 6.64 -2.39 -0.02 0.91 16 40 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 41 H 0.04 0.58 6.72 -2.39 -0.02 0.56 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.04 0.69 6.63 -2.39 -0.02 0.67 16 51 H 0.06 1.32 6.12 -2.39 -0.01 1.30 16 Total: -1.00 -62.93 380.44 0.87 -62.06 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.14 Total: 18.78 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.79 Total: -33.34 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -6.08 Total: -94.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -62.93 0.87 -62.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527140.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.133 kcal (2) G-P(sol) polarization free energy of solvation -62.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds