Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47311 * 2 1 4 4 C 1.53003 * 109.47096 * 240.00107 * 2 1 3 5 5 C 1.50697 * 109.46904 * 65.00068 * 4 2 1 6 6 H 1.07998 * 120.00195 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99990 * 179.97438 * 5 4 2 8 8 N 1.31523 * 120.00092 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00214 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47035 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47338 * 120.00306 * 9 7 5 12 12 H 1.48504 * 109.47064 * 240.00295 * 9 7 5 13 13 C 1.53000 * 109.46788 * 120.00425 * 2 1 3 14 14 N 1.46901 * 109.47045 * 294.99509 * 13 2 1 15 15 C 1.46902 * 110.99853 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.47484 * 325.00591 * 15 14 13 17 17 C 1.53007 * 109.46776 * 85.00685 * 15 14 13 18 18 C 1.53001 * 109.47275 * 205.00026 * 15 14 13 19 19 N 1.46904 * 109.46571 * 54.77425 * 18 15 14 20 20 C 1.46849 * 110.99833 * 190.10043 * 19 18 15 21 21 C 1.53033 * 109.52614 * 174.16150 * 20 19 18 22 22 C 1.53127 * 109.27524 * 59.18183 * 21 20 19 23 23 C 1.53120 * 109.16106 * 302.34552 * 22 21 20 24 24 H 1.08999 * 109.53630 * 297.69399 * 23 22 21 25 25 C 1.53001 * 109.50210 * 177.59728 * 23 22 21 26 26 C 1.46844 * 110.99902 * 65.89857 * 19 18 15 27 27 H 1.09003 * 109.46908 * 59.99722 * 1 2 3 28 28 H 1.08995 * 109.47474 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47371 * 299.99739 * 1 2 3 30 30 H 1.09001 * 109.47206 * 185.00280 * 4 2 1 31 31 H 1.09000 * 109.47293 * 305.00147 * 4 2 1 32 32 H 0.96999 * 120.00144 * 179.97438 * 8 7 5 33 33 H 1.09006 * 109.47041 * 174.99830 * 13 2 1 34 34 H 1.08997 * 109.47579 * 55.00080 * 13 2 1 35 35 H 1.00893 * 111.00179 * 303.95679 * 14 13 2 36 36 H 1.08993 * 109.47290 * 179.97438 * 17 15 14 37 37 H 1.09002 * 109.46574 * 300.00085 * 17 15 14 38 38 H 1.09000 * 109.47191 * 59.99726 * 17 15 14 39 39 H 1.08999 * 109.47393 * 294.78129 * 18 15 14 40 40 H 1.09001 * 109.47044 * 174.77412 * 18 15 14 41 41 H 1.09003 * 109.46646 * 294.18172 * 20 19 18 42 42 H 1.09007 * 109.45915 * 54.15955 * 20 19 18 43 43 H 1.08999 * 109.50887 * 179.11867 * 21 20 19 44 44 H 1.09000 * 109.50617 * 299.20338 * 21 20 19 45 45 H 1.08997 * 109.51842 * 182.44459 * 22 21 20 46 46 H 1.08994 * 109.52305 * 62.25576 * 22 21 20 47 47 H 1.08994 * 109.46794 * 300.19482 * 25 23 22 48 48 H 1.09000 * 109.46541 * 180.19843 * 25 23 22 49 49 H 1.08995 * 109.47045 * 60.19705 * 25 23 22 50 50 H 1.09003 * 109.46788 * 65.81869 * 26 19 18 51 51 H 1.09003 * 109.45841 * 305.85105 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3756 7 6 1.9932 -0.4016 -3.7283 8 7 2.6764 -1.5187 -3.8512 9 14 1.4997 0.5636 -5.2496 10 1 0.7422 1.7745 -4.8433 11 1 2.7180 0.9684 -5.9959 12 1 0.6459 -0.2853 -6.1189 13 6 2.0399 -0.7214 1.2492 14 7 1.6513 0.0373 2.4456 15 6 2.1246 -0.6274 3.6672 16 1 2.0806 -1.7082 3.5331 17 6 3.5684 -0.2069 3.9499 18 6 1.2358 -0.2229 4.8450 19 7 -0.1675 -0.5127 4.5215 20 6 -1.0700 0.0762 5.5191 21 6 -2.5212 -0.1195 5.0747 22 6 -2.8057 -1.6164 4.9223 23 6 -1.8210 -2.2150 3.9142 24 1 -1.9682 -1.7489 2.9399 25 6 -2.0592 -3.7221 3.8006 26 6 -0.3900 -1.9584 4.3923 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.1263 -0.7995 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 2.9237 -1.8416 -4.7318 33 1 3.1263 -0.7996 1.2056 34 1 1.6053 -1.7199 1.2951 35 1 1.9881 0.9871 2.3967 36 1 3.9195 -0.6996 4.8564 37 1 4.2016 -0.4950 3.1107 38 1 3.6124 0.8740 4.0839 39 1 1.3513 0.8437 5.0379 40 1 1.5283 -0.7862 5.7312 41 1 -0.9159 -0.4119 6.4814 42 1 -0.8601 1.1416 5.6145 43 1 -3.1913 0.3039 5.8229 44 1 -2.6800 0.3808 4.1193 45 1 -3.8253 -1.7587 4.5641 46 1 -2.6852 -2.1100 5.8865 47 1 -1.9131 -4.1874 4.7754 48 1 -1.3556 -4.1482 3.0855 49 1 -3.0785 -3.9042 3.4601 50 1 -0.2391 -2.4371 5.3599 51 1 0.3139 -2.3710 3.6694 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602528701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = -32.383767 kcal Electronic energy + Delta-G solvation = -23612.533700 eV Core-core repulsion = 20545.128414 eV Total energy + Delta-G solvation = -3067.405286 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36248 -37.27754 -35.13353 -33.56099 -32.25072 -31.66740 -29.52311 -26.73300 -26.62499 -26.36877 -24.84646 -23.28622 -22.28704 -21.57633 -20.40241 -19.62414 -18.82680 -16.31303 -16.00562 -15.51958 -14.93670 -14.65955 -14.54038 -14.41800 -14.19801 -14.07374 -13.65042 -13.16235 -12.95598 -12.61659 -12.57622 -12.35370 -12.30001 -12.02862 -11.93190 -11.62322 -11.38146 -11.35534 -11.21640 -11.03729 -10.81208 -10.78024 -10.66517 -10.61128 -10.33212 -10.20162 -10.13721 -10.06581 -9.59119 -9.03802 -8.85967 -8.27439 -8.08671 -7.79701 -5.92308 -3.92722 3.35570 3.43045 3.47618 3.89246 4.48641 4.57725 4.71045 4.76583 4.84779 5.00248 5.12785 5.18946 5.30192 5.38571 5.43274 5.43707 5.44989 5.51946 5.56704 5.61778 5.71050 5.74229 5.77606 5.79125 5.85211 5.88859 5.96402 5.96984 6.09245 6.13351 6.15351 6.18065 6.26774 6.32156 6.46695 6.57207 6.71193 6.85888 7.15245 7.21442 7.24615 7.33200 7.34702 7.59464 7.76665 7.88079 7.95653 8.09120 8.53992 9.14237 9.70404 11.19339 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018023 B = 0.003740 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.202527 B = 7485.338425 C = 8186.439520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.080 4.080 3 H 0.050 0.950 4 C 0.027 3.973 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.067 3.933 14 N -0.659 5.659 15 C 0.086 3.914 16 H 0.072 0.928 17 C -0.183 4.183 18 C 0.071 3.929 19 N -0.511 5.511 20 C 0.057 3.943 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.089 4.089 24 H 0.084 0.916 25 C -0.146 4.146 26 C 0.067 3.933 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.010 0.990 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.018 0.982 34 H 0.061 0.939 35 H 0.333 0.667 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.022 0.978 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.055 0.945 50 H 0.020 0.980 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 0.073 21.584 22.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.099 4.099 3 H 0.069 0.931 4 C -0.011 4.011 5 C -0.547 4.547 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.061 4.061 14 N -0.289 5.289 15 C -0.025 4.025 16 H 0.091 0.909 17 C -0.242 4.242 18 C -0.057 4.057 19 N -0.234 5.234 20 C -0.071 4.071 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.108 4.108 24 H 0.103 0.897 25 C -0.204 4.204 26 C -0.061 4.061 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.074 0.926 50 H 0.038 0.962 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.876 -0.103 21.037 22.132 hybrid contribution 1.073 0.192 -0.188 1.106 sum -5.803 0.088 20.848 21.641 Atomic orbital electron populations 1.21539 0.95590 1.00369 1.00102 1.21155 0.96099 0.98675 0.93956 0.93114 1.19125 0.95745 0.95552 0.90636 1.21297 1.34211 1.08194 0.91011 0.92542 1.25021 0.95418 0.95106 0.99060 1.69983 1.39373 1.21328 1.23142 0.86595 0.78207 0.80186 0.83381 1.19740 1.21181 1.21128 1.22124 0.96571 0.97566 0.89866 1.60487 1.63194 1.04903 1.00303 1.21553 0.90828 0.98962 0.91205 0.90937 1.22502 0.98231 1.01611 1.01872 1.22078 0.87993 1.00561 0.95104 1.61710 1.03387 1.12010 1.46305 1.22058 0.93238 0.99370 0.92402 1.21560 0.95240 0.96492 1.02080 1.21628 0.99023 0.95677 0.98832 1.21148 0.94098 0.95383 1.00171 0.89733 1.21793 1.01700 0.95579 1.01330 1.22092 0.97157 0.87968 0.98892 0.93284 0.94468 0.93431 0.97137 0.96691 0.93250 0.96418 0.92028 0.84894 0.92706 0.92213 0.92487 0.91132 0.95595 0.95987 0.91166 0.92139 0.90750 0.92104 0.92830 0.93278 0.92400 0.92619 0.96185 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 9 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.07 1.18 4.87 -3.82 -0.02 1.16 16 14 N -0.66 -9.49 5.42 -106.72 -0.58 -10.07 16 15 C 0.09 1.03 2.37 -67.71 -0.16 0.87 16 16 H 0.07 0.94 6.34 -51.93 -0.33 0.61 16 17 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 18 C 0.07 0.78 4.66 -3.82 -0.02 0.76 16 19 N -0.51 -5.99 4.38 -234.66 -1.03 -7.02 16 20 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 21 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 22 C -0.11 -1.10 5.29 -26.60 -0.14 -1.24 16 23 C -0.09 -0.98 2.88 -90.54 -0.26 -1.24 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 C -0.15 -1.44 9.20 37.16 0.34 -1.10 16 26 C 0.07 0.77 4.57 -3.83 -0.02 0.76 16 27 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.88 7.75 -51.93 -0.40 0.47 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 34 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 35 H 0.33 4.72 8.47 -39.30 -0.33 4.38 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 38 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 39 H 0.07 0.75 7.99 -51.93 -0.41 0.33 16 40 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.07 0.69 8.01 -51.93 -0.42 0.27 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.08 0.99 6.32 -51.93 -0.33 0.66 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -29.48 386.71 -11.05 -40.53 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -10.47 Total: -0.58 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.52 Total: -19.04 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.87 Total: -43.73 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.48 -11.05 -40.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602528701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.148 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds