Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 C 1.50699 * 109.47053 * 64.99801 * 4 2 1 6 6 H 1.07995 * 119.99640 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99593 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00495 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99694 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47173 * 90.00315 * 9 7 5 11 11 H 1.48500 * 109.47023 * 210.00257 * 9 7 5 12 12 H 1.48502 * 109.47434 * 330.00234 * 9 7 5 13 13 C 1.52997 * 109.47232 * 119.99867 * 2 1 3 14 14 N 1.46895 * 109.47252 * 294.99715 * 13 2 1 15 15 C 1.46900 * 111.00300 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.46891 * 35.00598 * 15 14 13 17 17 C 1.53003 * 109.47561 * 275.00221 * 15 14 13 18 18 C 1.53003 * 109.47282 * 155.00221 * 15 14 13 19 19 N 1.46898 * 109.46826 * 305.00479 * 18 15 14 20 20 C 1.46850 * 110.99958 * 294.20556 * 19 18 15 21 21 C 1.53035 * 109.52252 * 174.16349 * 20 19 18 22 22 C 1.53118 * 109.27983 * 59.18410 * 21 20 19 23 23 C 1.53124 * 109.15726 * 302.34126 * 22 21 20 24 24 H 1.08996 * 109.53524 * 297.69446 * 23 22 21 25 25 C 1.53003 * 109.50090 * 177.59458 * 23 22 21 26 26 C 1.46846 * 110.99925 * 169.99988 * 19 18 15 27 27 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 28 28 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 30 30 H 1.08997 * 109.47395 * 185.00408 * 4 2 1 31 31 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 32 32 H 0.97000 * 120.00169 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.46934 * 54.99884 * 13 2 1 34 34 H 1.09006 * 109.47500 * 174.99757 * 13 2 1 35 35 H 1.00902 * 111.00243 * 303.95880 * 14 13 2 36 36 H 1.09001 * 109.46805 * 300.00135 * 17 15 14 37 37 H 1.09009 * 109.46736 * 59.99437 * 17 15 14 38 38 H 1.08992 * 109.47439 * 179.97438 * 17 15 14 39 39 H 1.09000 * 109.46947 * 64.99745 * 18 15 14 40 40 H 1.08996 * 109.47254 * 184.99877 * 18 15 14 41 41 H 1.08998 * 109.46481 * 294.17981 * 20 19 18 42 42 H 1.09000 * 109.46137 * 54.14746 * 20 19 18 43 43 H 1.08999 * 109.50829 * 299.24058 * 21 20 19 44 44 H 1.09003 * 109.53711 * 179.13860 * 21 20 19 45 45 H 1.08997 * 109.52539 * 182.44249 * 22 21 20 46 46 H 1.09004 * 109.57755 * 62.27684 * 22 21 20 47 47 H 1.08997 * 109.47230 * 300.19542 * 25 23 22 48 48 H 1.09002 * 109.47169 * 60.20229 * 25 23 22 49 49 H 1.08999 * 109.47092 * 180.19807 * 25 23 22 50 50 H 1.08999 * 109.46586 * 305.85330 * 26 19 18 51 51 H 1.08999 * 109.46367 * 65.83333 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3756 7 6 1.9932 -0.4018 -3.7282 8 7 2.6765 -1.5189 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.5651 1.5428 -5.5817 11 1 1.3130 -0.3705 -6.3891 12 1 0.2283 1.2846 -4.9874 13 6 2.0400 -0.7212 1.2492 14 7 1.6515 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 3.0884 -1.0986 3.4742 17 6 1.1122 -1.6917 4.0939 18 6 2.2780 0.4076 4.7839 19 7 3.1576 1.4926 4.3288 20 6 4.5247 1.0042 4.1079 21 6 5.3747 2.1213 3.4984 22 6 5.3890 3.3217 4.4489 23 6 3.9499 3.7805 4.7006 24 1 3.5019 4.1065 3.7620 25 6 3.9510 4.9419 5.6967 26 6 3.1413 2.6152 5.2753 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.1263 -0.7996 -1.2056 31 1 1.6054 -1.7199 -1.2951 32 1 2.9237 -1.8418 -4.7317 33 1 1.6054 -1.7197 1.2951 34 1 3.1264 -0.7995 1.2056 35 1 1.9882 0.9874 2.3966 36 1 0.1487 -1.2200 4.2869 37 1 1.0030 -2.4288 3.2982 38 1 1.4637 -2.1850 5.0000 39 1 1.2997 0.8154 5.0381 40 1 2.7128 -0.0682 5.6629 41 1 4.9584 0.6958 5.0592 42 1 4.5008 0.1533 3.4271 43 1 4.9494 2.4208 2.5405 44 1 6.3934 1.7638 3.3485 45 1 5.9574 4.1357 3.9992 46 1 5.8500 3.0339 5.3938 47 1 4.4003 4.6158 6.6346 48 1 4.5270 5.7716 5.2868 49 1 2.9261 5.2658 5.8781 50 1 2.1126 2.9346 5.4424 51 1 3.5816 2.2994 6.2210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602528704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -34.208735 kcal Electronic energy + Delta-G solvation = -23409.510159 eV Core-core repulsion = 20342.025736 eV Total energy + Delta-G solvation = -3067.484423 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.59144 -37.23642 -35.21172 -33.43569 -32.23367 -31.87529 -29.68110 -26.98064 -26.66282 -26.41307 -24.84117 -23.09863 -22.46000 -21.93818 -19.96950 -19.76340 -18.85608 -16.29596 -16.13529 -15.76701 -15.26306 -14.97479 -14.52746 -14.44280 -14.29906 -13.89745 -13.75730 -13.41297 -12.91858 -12.72939 -12.52294 -12.24970 -12.14449 -12.11510 -11.79391 -11.68597 -11.62406 -11.40518 -11.21910 -11.15094 -10.91651 -10.80759 -10.78390 -10.62234 -10.39739 -10.27152 -10.18008 -10.07981 -9.58612 -9.04173 -8.87055 -8.44787 -8.26655 -7.86129 -5.91642 -3.92202 3.36961 3.43026 3.46923 3.69571 4.48095 4.52569 4.57434 4.64370 4.75188 4.88597 5.03705 5.18659 5.24227 5.27507 5.34065 5.38923 5.41643 5.44128 5.48890 5.56373 5.58426 5.59810 5.72728 5.78226 5.85033 5.87165 5.91789 5.93199 6.03232 6.03487 6.09852 6.15123 6.28112 6.29491 6.38722 6.55643 6.69761 6.82579 6.95246 6.97873 7.15489 7.29702 7.32829 7.60632 7.77321 7.93437 8.04155 8.09688 8.54422 9.14463 9.70793 11.19969 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003660 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.058618 B = 7648.768241 C = 8535.713646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.081 4.081 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.509 4.509 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.067 3.933 14 N -0.678 5.678 15 C 0.087 3.913 16 H 0.037 0.963 17 C -0.138 4.138 18 C 0.055 3.945 19 N -0.537 5.537 20 C 0.053 3.947 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.091 4.091 24 H 0.082 0.918 25 C -0.146 4.146 26 C 0.065 3.935 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.011 0.989 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.353 0.647 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.096 7.186 21.852 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.062 4.062 14 N -0.312 5.312 15 C -0.024 4.024 16 H 0.055 0.945 17 C -0.197 4.197 18 C -0.073 4.073 19 N -0.261 5.261 20 C -0.075 4.075 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.110 4.110 24 H 0.100 0.900 25 C -0.203 4.203 26 C -0.063 4.063 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.029 0.971 31 H 0.033 0.967 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.174 0.826 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.092 0.908 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.366 6.963 21.316 22.549 hybrid contribution 1.135 0.226 -0.218 1.178 sum 3.502 7.189 21.098 22.563 Atomic orbital electron populations 1.21567 0.95859 1.00361 1.00031 1.21165 0.95863 0.98887 0.94052 0.92927 1.19114 0.95802 0.95501 0.90551 1.21258 1.34325 1.08186 0.91021 0.92589 1.25020 0.95433 0.95099 0.99055 1.69972 1.39323 1.21274 1.23259 0.86644 0.78928 0.79813 0.82920 1.20803 1.21362 1.19880 1.22125 0.96618 0.97585 0.89880 1.60549 1.63627 1.06638 1.00403 1.21461 0.96213 0.93832 0.90898 0.94539 1.21762 0.99476 0.98226 1.00223 1.22310 0.97249 0.91838 0.95890 1.61777 1.09180 1.08423 1.46756 1.22144 0.88137 0.97864 0.99331 1.21589 0.99235 0.95100 0.99739 1.21634 0.96311 0.97990 0.99269 1.21184 0.95630 0.94450 0.99744 0.90002 1.21791 1.01789 0.97883 0.98879 1.22093 1.00292 0.91124 0.92773 0.92988 0.94356 0.93914 0.97064 0.96705 0.93189 0.92099 0.96337 0.82640 0.92078 0.92337 0.93425 0.90021 0.94849 0.95281 0.90578 0.90644 0.91615 0.91858 0.92605 0.93029 0.92473 0.92563 0.90751 0.95301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.71 2.48 -90.62 -0.22 -1.94 16 3 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.58 8.41 -34.44 -0.29 -14.87 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.21 4.87 -3.83 -0.02 1.19 16 14 N -0.68 -10.31 5.76 -106.72 -0.61 -10.93 16 15 C 0.09 1.10 2.42 -67.71 -0.16 0.93 16 16 H 0.04 0.50 6.32 -51.93 -0.33 0.17 16 17 C -0.14 -1.63 9.42 37.16 0.35 -1.28 16 18 C 0.06 0.60 4.60 -3.82 -0.02 0.58 16 19 N -0.54 -5.85 3.49 -234.67 -0.82 -6.67 16 20 C 0.05 0.57 5.29 -3.83 -0.02 0.55 16 21 C -0.12 -1.22 6.09 -26.65 -0.16 -1.38 16 22 C -0.11 -1.02 5.29 -26.61 -0.14 -1.16 16 23 C -0.09 -0.81 2.88 -90.53 -0.26 -1.08 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 C -0.15 -1.06 9.20 37.16 0.34 -0.72 16 26 C 0.07 0.61 4.74 -3.83 -0.02 0.59 16 27 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.13 7.43 -51.93 -0.39 0.74 16 34 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 35 H 0.35 5.50 7.36 -39.29 -0.29 5.21 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.76 7.45 -51.92 -0.39 0.37 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.88 7.99 -51.93 -0.41 0.46 16 40 H 0.03 0.34 8.12 -51.93 -0.42 -0.09 16 41 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.93 6.32 -51.93 -0.33 0.60 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 0.68 8.02 -51.93 -0.42 0.27 16 51 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 385.29 15.07 5.81 5.81 Total: -1.00 -29.41 385.29 -10.85 -40.26 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -10.42 Total: -0.17 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -0.52 Total: -18.60 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.70 Total: -44.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.41 -10.85 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602528704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.049 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds