Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46759 * 2 1 4 4 C 1.52995 * 109.47335 * 239.99861 * 2 1 3 5 5 C 1.50701 * 109.47032 * 64.99607 * 4 2 1 6 6 H 1.07999 * 120.00137 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99705 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00184 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47445 * 59.99611 * 9 7 5 11 11 H 1.48497 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46978 * 300.00093 * 9 7 5 13 13 C 1.53003 * 109.47035 * 119.99434 * 2 1 3 14 14 N 1.46897 * 109.47321 * 295.00077 * 13 2 1 15 15 C 1.46899 * 110.99857 * 180.02562 * 14 13 2 16 16 H 1.08992 * 109.47178 * 34.99882 * 15 14 13 17 17 C 1.52998 * 109.46865 * 274.99659 * 15 14 13 18 18 C 1.53003 * 109.47059 * 155.00194 * 15 14 13 19 19 N 1.46901 * 109.46839 * 305.14154 * 18 15 14 20 20 C 1.46848 * 110.99585 * 169.88961 * 19 18 15 21 21 C 1.53039 * 109.51936 * 185.83499 * 20 19 18 22 22 C 1.53114 * 109.28417 * 300.82237 * 21 20 19 23 23 C 1.53119 * 109.15746 * 57.65546 * 22 21 20 24 24 H 1.08995 * 109.50776 * 62.28888 * 23 22 21 25 25 C 1.52997 * 109.53633 * 182.38760 * 23 22 21 26 26 C 1.46844 * 111.00029 * 294.09999 * 19 18 15 27 27 H 1.09000 * 109.47176 * 60.00356 * 1 2 3 28 28 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47353 * 300.00338 * 1 2 3 30 30 H 1.08996 * 109.47476 * 184.99982 * 4 2 1 31 31 H 1.09000 * 109.46868 * 304.99994 * 4 2 1 32 32 H 0.96996 * 119.99931 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46446 * 175.00282 * 13 2 1 34 34 H 1.08991 * 109.46724 * 55.00372 * 13 2 1 35 35 H 1.00902 * 111.00028 * 56.04415 * 14 13 2 36 36 H 1.09006 * 109.47366 * 300.00330 * 17 15 14 37 37 H 1.09005 * 109.47070 * 60.00308 * 17 15 14 38 38 H 1.09000 * 109.47359 * 180.02562 * 17 15 14 39 39 H 1.08996 * 109.46869 * 185.14319 * 18 15 14 40 40 H 1.08996 * 109.47085 * 65.14174 * 18 15 14 41 41 H 1.08989 * 109.46927 * 305.85538 * 20 19 18 42 42 H 1.09003 * 109.46029 * 65.82871 * 20 19 18 43 43 H 1.09001 * 109.50162 * 180.88232 * 21 20 19 44 44 H 1.08996 * 109.50086 * 60.77071 * 21 20 19 45 45 H 1.09001 * 109.52163 * 297.75289 * 22 21 20 46 46 H 1.08994 * 109.52488 * 177.55975 * 22 21 20 47 47 H 1.09005 * 109.47701 * 179.82134 * 25 23 22 48 48 H 1.09002 * 109.47489 * 299.82270 * 25 23 22 49 49 H 1.09000 * 109.47166 * 59.81942 * 25 23 22 50 50 H 1.08999 * 109.46277 * 294.17797 * 26 19 18 51 51 H 1.08998 * 109.46293 * 54.14373 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3757 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5199 -3.8512 9 14 1.4987 0.5626 -5.2496 10 1 2.0917 1.9226 -5.1872 11 1 1.9926 -0.1382 -6.4622 12 1 0.0188 0.6702 -5.3090 13 6 2.0400 -0.7211 1.2493 14 7 1.6513 0.0376 2.4457 15 6 2.1258 -0.6263 3.6672 16 1 3.0895 -1.0973 3.4739 17 6 1.1140 -1.6915 4.0945 18 6 2.2787 0.4087 4.7836 19 7 3.1546 1.4959 4.3267 20 6 3.1353 2.6196 5.2719 21 6 3.9400 3.7867 4.6953 22 6 5.3803 3.3321 4.4432 23 6 5.3691 2.1307 3.4940 24 1 4.9423 2.4276 2.5360 25 6 6.8000 1.6320 3.2830 26 6 4.5230 1.0115 4.1054 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2950 32 1 2.9213 -1.8432 -4.7318 33 1 3.1263 -0.7993 1.2056 34 1 1.6054 -1.7196 1.2952 35 1 0.6528 0.1795 2.4753 36 1 0.1502 -1.2204 4.2878 37 1 1.0050 -2.4289 3.2991 38 1 1.4657 -2.1838 5.0011 39 1 2.7166 -0.0660 5.6616 40 1 1.2999 0.8140 5.0399 41 1 2.1059 2.9359 5.4393 42 1 3.5772 2.3061 6.2178 43 1 3.9387 4.6149 5.4040 44 1 3.4907 4.1098 3.7563 45 1 5.8425 3.0457 5.3878 46 1 5.9459 4.1474 3.9922 47 1 6.7906 0.7748 2.6097 48 1 7.4023 2.4294 2.8475 49 1 7.2269 1.3365 4.2414 50 1 4.9583 0.7056 5.0567 51 1 4.5013 0.1598 3.4255 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602528706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -32.058624 kcal Electronic energy + Delta-G solvation = -23518.817861 eV Core-core repulsion = 20451.426674 eV Total energy + Delta-G solvation = -3067.391187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.35213 -37.33821 -35.14930 -33.54102 -32.26154 -31.64248 -29.50838 -26.74108 -26.69058 -26.35023 -25.02542 -23.30544 -22.24614 -21.56056 -20.31218 -19.60217 -18.81012 -16.40910 -15.99584 -15.51906 -15.00664 -14.69838 -14.54359 -14.41413 -14.20764 -14.05580 -13.50246 -13.15460 -13.03975 -12.62331 -12.55758 -12.37481 -12.32884 -11.99716 -11.90732 -11.66342 -11.59073 -11.38336 -11.24184 -11.01912 -10.85142 -10.76462 -10.67994 -10.59912 -10.31562 -10.27164 -10.08861 -10.07270 -9.61390 -9.05265 -8.89114 -8.26725 -8.07586 -7.81684 -5.91808 -3.92416 3.38488 3.42496 3.45423 3.90332 4.49018 4.58125 4.72938 4.77855 4.86693 5.01122 5.14198 5.18991 5.31232 5.39380 5.43897 5.44146 5.46179 5.53711 5.58195 5.62396 5.72646 5.75606 5.79178 5.80916 5.86799 5.89700 5.94342 5.98362 6.05573 6.12174 6.16399 6.18074 6.20338 6.29173 6.40111 6.49185 6.58945 6.68166 7.07969 7.20490 7.22723 7.25680 7.28798 7.60041 7.77190 7.88414 7.96417 8.09378 8.53858 9.13953 9.70548 11.19765 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.015731 B = 0.003895 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.545889 B = 7186.647785 C = 8067.537278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.066 0.934 4 C 0.029 3.971 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.068 3.932 14 N -0.662 5.662 15 C 0.085 3.915 16 H 0.073 0.927 17 C -0.182 4.182 18 C 0.071 3.929 19 N -0.512 5.512 20 C 0.057 3.943 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.090 4.090 24 H 0.084 0.916 25 C -0.146 4.146 26 C 0.067 3.933 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.032 0.968 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.334 0.666 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.026 0.974 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.022 0.978 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.060 0.940 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.020 0.980 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 5.222 20.917 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.061 4.061 14 N -0.293 5.293 15 C -0.026 4.026 16 H 0.091 0.909 17 C -0.242 4.242 18 C -0.057 4.057 19 N -0.235 5.235 20 C -0.071 4.071 21 C -0.154 4.154 22 C -0.152 4.152 23 C -0.108 4.108 24 H 0.103 0.897 25 C -0.204 4.204 26 C -0.061 4.061 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.038 0.962 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.897 5.707 20.301 21.286 hybrid contribution -0.541 -0.718 -0.076 0.902 sum 2.356 4.989 20.225 20.964 Atomic orbital electron populations 1.21723 0.96893 1.00175 1.00169 1.21182 0.94644 1.00143 0.94108 0.91601 1.19095 0.96030 0.95258 0.90494 1.21220 1.34491 1.08180 0.91024 0.92657 1.25011 0.95391 0.95084 0.99027 1.69956 1.39233 1.21248 1.23369 0.86710 0.78838 0.80189 0.82567 1.20279 1.21432 1.20352 1.22106 0.99850 0.94184 0.89930 1.60529 1.19056 1.49409 1.00278 1.21558 0.98048 0.91904 0.91112 0.90879 1.22502 1.00006 1.00035 1.01654 1.22076 0.96997 0.91939 0.94735 1.61706 1.08650 1.07592 1.45564 1.22057 1.00003 0.92184 0.92816 1.21562 0.95367 0.96760 1.01706 1.21627 0.96617 0.97882 0.99041 1.21149 0.94889 0.94794 1.00009 0.89718 1.21792 0.96025 1.01363 1.01215 1.22096 0.87847 0.97643 0.98537 0.92090 0.94276 0.94933 0.96792 0.96955 0.93127 0.91957 0.96459 0.84670 0.92529 0.92241 0.92664 0.95558 0.91158 0.91170 0.95973 0.92122 0.90740 0.92827 0.92078 0.92350 0.92603 0.93294 0.96154 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.77 37.16 0.33 -2.20 16 2 C -0.08 -1.71 2.54 -90.62 -0.23 -1.94 16 3 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.07 1.20 4.94 -3.82 -0.02 1.18 16 14 N -0.66 -9.76 5.97 -106.73 -0.64 -10.40 16 15 C 0.08 1.04 2.37 -67.71 -0.16 0.88 16 16 H 0.07 0.96 6.33 -51.93 -0.33 0.63 16 17 C -0.18 -1.97 9.16 37.16 0.34 -1.63 16 18 C 0.07 0.80 4.66 -3.82 -0.02 0.78 16 19 N -0.51 -6.20 4.38 -234.67 -1.03 -7.22 16 20 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 21 C -0.12 -1.16 6.09 -26.65 -0.16 -1.33 16 22 C -0.11 -1.14 5.29 -26.61 -0.14 -1.28 16 23 C -0.09 -1.03 2.88 -90.54 -0.26 -1.29 16 24 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 25 C -0.15 -1.50 9.20 37.16 0.34 -1.16 16 26 C 0.07 0.80 4.57 -3.83 -0.02 0.78 16 27 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 30 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 34 H 0.02 0.31 7.44 -51.93 -0.39 -0.08 16 35 H 0.33 4.81 6.73 -39.29 -0.26 4.55 16 36 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 37 H 0.06 0.71 7.45 -51.93 -0.39 0.32 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.03 0.27 8.12 -51.93 -0.42 -0.15 16 40 H 0.07 0.76 7.99 -51.93 -0.41 0.35 16 41 H 0.07 0.71 8.01 -51.94 -0.42 0.29 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 51 H 0.08 1.02 6.32 -51.93 -0.33 0.69 16 LS Contribution 384.45 15.07 5.79 5.79 Total: -1.00 -29.42 384.45 -11.03 -40.45 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -10.34 Total: 0.28 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.53 Total: -19.28 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.93 Total: -44.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.42 -11.03 -40.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602528706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.394 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds