Wall clock time and date at job start Tue Mar 31 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46847 * 2 1 4 4 C 1.52996 * 109.47021 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.46846 * 110.99848 * 169.99934 * 5 4 3 7 7 C 1.53039 * 109.52164 * 185.84362 * 6 5 4 8 8 C 1.53117 * 109.28048 * 300.82556 * 7 6 5 9 9 N 1.46902 * 109.52488 * 177.55999 * 8 7 6 10 10 C 1.46901 * 111.00023 * 154.99519 * 9 8 7 11 11 C 1.53000 * 109.46818 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47398 * 305.00447 * 11 10 9 13 13 C 1.53002 * 109.47233 * 65.00620 * 11 10 9 14 14 C 1.52997 * 109.47060 * 185.00277 * 11 10 9 15 15 C 1.50698 * 109.47721 * 175.00208 * 14 11 10 16 16 H 1.08008 * 119.99163 * 0.02562 * 15 14 11 17 17 C 1.37869 * 120.00614 * 180.02562 * 15 14 11 18 18 N 1.31514 * 120.00228 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99783 * 359.97438 * 17 15 14 20 20 H 1.48489 * 109.47262 * 90.00178 * 19 17 15 21 21 H 1.48509 * 109.46916 * 210.00229 * 19 17 15 22 22 H 1.48493 * 109.47108 * 329.99715 * 19 17 15 23 23 C 1.53120 * 109.16374 * 57.65377 * 8 7 6 24 24 C 1.46846 * 111.00498 * 294.21583 * 5 4 3 25 25 H 1.09000 * 109.47140 * 60.00150 * 1 2 3 26 26 H 1.09004 * 109.46632 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47051 * 299.99937 * 1 2 3 28 28 H 1.08999 * 109.47615 * 240.00524 * 2 1 3 29 29 H 1.08993 * 109.47390 * 119.99570 * 2 1 3 30 30 H 1.08998 * 109.47083 * 59.99717 * 3 2 1 31 31 H 1.09000 * 109.47128 * 299.99857 * 3 2 1 32 32 H 1.09003 * 109.46900 * 60.00659 * 4 3 2 33 33 H 1.08994 * 109.47865 * 300.00097 * 4 3 2 34 34 H 1.08997 * 109.45931 * 65.83417 * 6 5 4 35 35 H 1.08999 * 109.45702 * 305.85710 * 6 5 4 36 36 H 1.09003 * 109.50465 * 180.88181 * 7 6 5 37 37 H 1.09001 * 109.50176 * 60.76909 * 7 6 5 38 38 H 1.09000 * 109.51931 * 297.68242 * 8 7 6 39 39 H 1.00901 * 110.99576 * 31.04311 * 9 8 7 40 40 H 1.09002 * 109.46747 * 60.00311 * 10 9 8 41 41 H 1.08991 * 109.47315 * 300.00378 * 10 9 8 42 42 H 1.08996 * 109.47407 * 180.02562 * 13 11 10 43 43 H 1.09000 * 109.46986 * 299.99797 * 13 11 10 44 44 H 1.09002 * 109.47075 * 59.99068 * 13 11 10 45 45 H 1.09000 * 109.47325 * 295.00173 * 14 11 10 46 46 H 1.09008 * 109.47017 * 55.00082 * 14 11 10 47 47 H 0.96997 * 120.00333 * 180.02562 * 18 17 15 48 48 H 1.08998 * 109.50243 * 62.28537 * 23 8 7 49 49 H 1.08993 * 109.50463 * 182.40601 * 23 8 7 50 50 H 1.08997 * 109.46131 * 294.17405 * 24 5 4 51 51 H 1.09000 * 109.46218 * 54.15006 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8277 0.0000 6 6 5.5078 2.8739 0.2387 7 6 5.9571 4.3304 0.3762 8 6 5.6077 5.0906 -0.9061 9 7 5.9838 6.5029 -0.7577 10 6 6.2308 7.1223 -2.0666 11 6 6.6184 8.5894 -1.8714 12 1 5.8473 9.0948 -1.2900 13 6 7.9529 8.6698 -1.1274 14 6 6.7541 9.2670 -3.2365 15 6 7.0149 10.7386 -3.0433 16 1 7.0780 11.1494 -2.0464 17 6 7.1729 11.5605 -4.1389 18 7 7.4010 12.8447 -3.9702 19 14 7.0645 10.8497 -5.8630 20 1 5.6576 10.9069 -6.3344 21 1 7.9261 11.6395 -6.7791 22 1 7.5238 9.4377 -5.8460 23 6 4.1009 4.9861 -1.1576 24 6 3.7054 3.5106 -1.2508 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8935 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9336 0.9288 -0.8892 33 1 3.9330 0.9290 0.8908 34 1 6.0288 2.4108 -0.5992 35 1 5.7421 2.3334 1.1557 36 1 7.0345 4.3652 0.5378 37 1 5.4467 4.7903 1.2225 38 1 6.1492 4.6558 -1.7463 39 1 6.7859 6.6018 -0.1536 40 1 5.3269 7.0632 -2.6729 41 1 7.0413 6.5959 -2.5705 42 1 8.2289 9.7150 -0.9879 43 1 7.8563 8.1871 -0.1548 44 1 8.7241 8.1643 -1.7087 45 1 7.5842 8.8197 -3.7832 46 1 5.8320 9.1326 -3.8021 47 1 7.5118 13.4230 -4.7410 48 1 3.5613 5.4563 -0.3356 49 1 3.8521 5.4892 -2.0920 50 1 4.2349 3.0444 -2.0816 51 1 2.6307 3.4325 -1.4155 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602537084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:55 Heat of formation + Delta-G solvation = -34.014730 kcal Electronic energy + Delta-G solvation = -22502.277856 eV Core-core repulsion = 19434.801846 eV Total energy + Delta-G solvation = -3067.476010 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.52198 -37.16424 -35.65874 -34.10062 -32.31045 -31.07058 -30.82866 -28.45019 -27.28128 -25.50725 -23.98223 -23.29650 -22.27749 -21.43805 -21.03117 -19.86968 -18.89715 -16.80793 -16.27693 -16.02105 -15.42254 -15.15211 -14.87729 -14.67409 -14.04970 -14.00927 -13.83824 -13.59125 -13.33168 -13.10120 -12.84573 -12.58211 -12.29330 -12.25009 -12.11158 -11.74051 -11.68413 -11.40710 -11.37856 -11.28751 -11.05304 -10.99470 -10.90245 -10.71691 -10.51775 -10.40890 -10.27788 -9.87214 -9.63810 -9.38949 -9.02754 -8.53652 -8.49371 -8.16423 -5.99699 -3.96399 3.32910 3.40107 3.43802 3.61089 4.28392 4.47601 4.48778 4.60859 4.71464 4.73238 4.83590 4.94637 5.08766 5.10637 5.19396 5.29552 5.33183 5.33839 5.41276 5.42372 5.50081 5.53176 5.57729 5.60849 5.63286 5.70248 5.71898 5.79707 5.88775 5.94698 5.97459 5.99106 6.01984 6.10058 6.21104 6.35224 6.42666 6.50491 6.82044 6.88605 6.89534 7.00422 7.08895 7.31102 7.34618 7.52937 7.66886 7.85457 8.60081 9.06170 9.63292 11.13733 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028397 B = 0.002576 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.778530 B =10867.894045 C =11472.800585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.055 3.945 5 N -0.538 5.538 6 C 0.061 3.939 7 C -0.118 4.118 8 C 0.086 3.914 9 N -0.684 5.684 10 C 0.063 3.937 11 C -0.076 4.076 12 H 0.071 0.929 13 C -0.135 4.135 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.104 4.104 24 C 0.054 3.946 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.339 0.661 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.039 0.961 45 H 0.013 0.987 46 H 0.010 0.990 47 H 0.262 0.738 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.029 0.971 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 -26.584 8.526 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.073 4.073 5 N -0.262 5.262 6 C -0.068 4.068 7 C -0.156 4.156 8 C -0.024 4.024 9 N -0.316 5.316 10 C -0.066 4.066 11 C -0.095 4.095 12 H 0.090 0.910 13 C -0.192 4.192 14 C -0.046 4.046 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.142 4.142 24 C -0.074 4.074 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.159 0.841 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.031 0.969 46 H 0.028 0.972 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.047 0.953 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.020 -25.940 8.843 28.852 hybrid contribution 1.266 -1.051 -1.996 2.587 sum -7.754 -26.991 6.847 28.905 Atomic orbital electron populations 1.21763 0.95713 1.01502 1.01982 1.21495 0.96035 0.96815 1.01831 1.21646 0.94478 0.96511 1.02920 1.22114 0.95702 0.88914 1.00532 1.61935 1.13727 1.15167 1.35394 1.22022 0.87356 0.97055 1.00345 1.21768 1.00426 0.94512 0.98906 1.21535 0.96070 0.88625 0.96177 1.60563 1.43051 1.13504 1.14501 1.22191 0.99060 0.95990 0.89325 1.21029 0.97189 0.92247 0.98993 0.91020 1.21742 0.97145 1.02617 0.97741 1.19602 0.95969 0.96668 0.92402 1.21138 1.48189 0.90774 0.94864 0.90808 1.25034 0.94851 0.94728 0.99059 1.69914 1.50032 1.04013 1.30500 0.86802 0.78179 0.79530 0.84886 1.20371 1.21521 1.19172 1.21575 0.95626 0.94281 1.02748 1.22173 1.00795 0.94927 0.89508 0.92732 0.92871 0.92616 0.92283 0.92049 0.91003 0.91850 0.95186 0.90951 0.95202 0.90750 0.91754 0.90043 0.94696 0.84120 0.91627 0.96063 0.91353 0.94682 0.94169 0.96887 0.97168 0.92859 0.90267 0.91560 0.95326 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.86 5.14 -26.73 -0.14 -1.00 16 4 C 0.06 0.44 4.96 -3.82 -0.02 0.42 16 5 N -0.54 -5.22 4.66 -234.67 -1.09 -6.32 16 6 C 0.06 0.57 5.46 -3.83 -0.02 0.54 16 7 C -0.12 -1.21 5.36 -26.65 -0.14 -1.36 16 8 C 0.09 1.05 2.56 -67.59 -0.17 0.88 16 9 N -0.68 -9.80 6.31 -106.60 -0.67 -10.47 16 10 C 0.06 1.05 4.95 -3.82 -0.02 1.03 16 11 C -0.08 -1.51 2.55 -90.62 -0.23 -1.74 16 12 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 13 C -0.14 -2.50 8.77 37.16 0.33 -2.18 16 14 C -0.01 -0.21 3.52 -27.89 -0.10 -0.30 16 15 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 16 H 0.07 2.25 7.30 -52.48 -0.38 1.87 16 17 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.91 -28.16 13.96 55.43 0.77 -27.39 16 19 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C -0.10 -1.24 5.59 -26.65 -0.15 -1.38 16 24 C 0.05 0.55 5.29 -3.83 -0.02 0.53 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 32 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 33 H 0.07 0.53 7.99 -51.93 -0.41 0.12 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.45 7.80 -51.93 -0.41 0.05 16 39 H 0.34 4.62 6.62 -39.29 -0.26 4.36 16 40 H 0.07 1.12 7.51 -51.93 -0.39 0.73 16 41 H 0.02 0.35 8.06 -51.93 -0.42 -0.07 16 42 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 43 H 0.03 0.54 6.68 -51.93 -0.35 0.20 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 46 H 0.01 0.24 7.57 -51.92 -0.39 -0.15 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 48 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 0.83 7.54 -51.93 -0.39 0.44 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 51 H 0.08 0.74 6.21 -51.93 -0.32 0.41 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -29.89 381.71 -11.08 -40.98 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -10.29 Total: -0.82 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.88 Total: -19.10 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.99 Total: -44.18 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.89 -11.08 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602537084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.963 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds