Wall clock time and date at job start Tue Mar 31 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46890 * 2 1 4 4 C 1.53007 * 109.47108 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.47067 * 179.97438 * 4 3 2 6 6 C 1.46850 * 111.00075 * 170.00101 * 5 4 3 7 7 C 1.53034 * 109.52273 * 185.84187 * 6 5 4 8 8 C 1.53114 * 109.27933 * 300.81713 * 7 6 5 9 9 N 1.46898 * 109.52402 * 177.56157 * 8 7 6 10 10 C 1.46903 * 111.00043 * 154.99916 * 9 8 7 11 11 C 1.52999 * 109.47368 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.46617 * 55.00168 * 11 10 9 13 13 C 1.53005 * 109.47107 * 295.00343 * 11 10 9 14 14 C 1.53002 * 109.47329 * 174.99975 * 11 10 9 15 15 C 1.50696 * 109.46919 * 185.00033 * 14 11 10 16 16 H 1.07999 * 120.00202 * 359.97438 * 15 14 11 17 17 C 1.37884 * 119.99746 * 180.02562 * 15 14 11 18 18 N 1.31514 * 119.99573 * 0.27650 * 17 15 14 19 19 Si 1.86800 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47035 * 60.00183 * 19 17 15 21 21 H 1.48503 * 109.46845 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47237 * 299.99939 * 19 17 15 23 23 C 1.53124 * 109.16192 * 57.65617 * 8 7 6 24 24 C 1.46847 * 111.00210 * 294.20846 * 5 4 3 25 25 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47551 * 300.00234 * 1 2 3 27 27 H 1.09004 * 109.47278 * 60.00605 * 1 2 3 28 28 H 1.09004 * 109.47473 * 240.00082 * 2 1 3 29 29 H 1.08996 * 109.47500 * 119.99629 * 2 1 3 30 30 H 1.08996 * 109.47751 * 60.00106 * 3 2 1 31 31 H 1.09001 * 109.47269 * 299.99346 * 3 2 1 32 32 H 1.09000 * 109.46848 * 60.00254 * 4 3 2 33 33 H 1.08990 * 109.47045 * 299.99596 * 4 3 2 34 34 H 1.08998 * 109.46068 * 65.81998 * 6 5 4 35 35 H 1.09003 * 109.44879 * 305.84775 * 6 5 4 36 36 H 1.09003 * 109.50129 * 180.87900 * 7 6 5 37 37 H 1.09001 * 109.50515 * 60.76202 * 7 6 5 38 38 H 1.09006 * 109.52548 * 297.69152 * 8 7 6 39 39 H 1.00899 * 110.99939 * 278.95028 * 9 8 7 40 40 H 1.09008 * 109.46872 * 60.00082 * 10 9 8 41 41 H 1.09005 * 109.47368 * 300.00424 * 10 9 8 42 42 H 1.08997 * 109.47105 * 179.97438 * 13 11 10 43 43 H 1.08997 * 109.46686 * 299.99929 * 13 11 10 44 44 H 1.09001 * 109.47004 * 59.99757 * 13 11 10 45 45 H 1.09000 * 109.46497 * 65.00298 * 14 11 10 46 46 H 1.08999 * 109.46623 * 305.00362 * 14 11 10 47 47 H 0.97001 * 120.00651 * 359.71956 * 18 17 15 48 48 H 1.08998 * 109.50130 * 62.28503 * 23 8 7 49 49 H 1.08990 * 109.50567 * 182.40709 * 23 8 7 50 50 H 1.09000 * 109.46315 * 294.17806 * 24 5 4 51 51 H 1.09008 * 109.45906 * 54.15736 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0596 2.8276 0.0000 6 6 5.5078 2.8739 0.2386 7 6 5.9571 4.3304 0.3762 8 6 5.6078 5.0904 -0.9063 9 7 5.9839 6.5027 -0.7579 10 6 6.2310 7.1220 -2.0669 11 6 6.6186 8.5892 -1.8719 12 1 7.4692 8.6531 -1.1933 13 6 5.4343 9.3551 -1.2788 14 6 6.9966 9.2007 -3.2225 15 6 7.4953 10.6075 -3.0150 16 1 7.5379 11.0240 -2.0195 17 6 7.8961 11.3634 -4.0963 18 7 7.8381 10.8583 -5.3092 19 14 8.5136 13.1075 -3.8392 20 1 9.7066 13.0849 -2.9552 21 1 8.8806 13.7009 -5.1501 22 1 7.4450 13.9229 -3.2078 23 6 4.1010 4.9859 -1.1579 24 6 3.7055 3.5104 -1.2509 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9336 0.9286 -0.8891 33 1 3.9329 0.9290 0.8908 34 1 6.0289 2.4106 -0.5991 35 1 5.7420 2.3335 1.1558 36 1 7.0345 4.3651 0.5377 37 1 5.4467 4.7903 1.2223 38 1 6.1493 4.6555 -1.7465 39 1 5.2807 7.0120 -0.2439 40 1 5.3271 7.0629 -2.6732 41 1 7.0416 6.5955 -2.5708 42 1 5.7106 10.4002 -1.1395 43 1 4.5837 9.2911 -1.9574 44 1 5.1651 8.9194 -0.3166 45 1 6.1210 9.2175 -3.8714 46 1 7.7807 8.6018 -3.6857 47 1 7.5171 9.9528 -5.4428 48 1 3.5613 5.4561 -0.3359 49 1 3.8523 5.4888 -2.0923 50 1 4.2351 3.0441 -2.0817 51 1 2.6307 3.4324 -1.4156 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602537085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:57 Heat of formation + Delta-G solvation = -42.241005 kcal Electronic energy + Delta-G solvation = -22507.644459 eV Core-core repulsion = 19439.811731 eV Total energy + Delta-G solvation = -3067.832728 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.55584 -37.17876 -35.67432 -34.20083 -32.46019 -31.07055 -30.61541 -28.31856 -26.48880 -25.41748 -23.82524 -23.35400 -22.46975 -21.75460 -21.00185 -20.08515 -19.08366 -16.72256 -16.40556 -16.02389 -15.23359 -15.12715 -14.79164 -14.52956 -14.17848 -13.86114 -13.70206 -13.55640 -13.33047 -13.21438 -12.90205 -12.51939 -12.48510 -12.22418 -11.78043 -11.62534 -11.57388 -11.46349 -11.32784 -11.28101 -11.07206 -10.94981 -10.90051 -10.69832 -10.65611 -10.50028 -10.11881 -10.02676 -9.81798 -9.40585 -8.55122 -8.44512 -8.27408 -8.09956 -6.30028 -3.97868 3.46825 3.49000 3.61152 3.67415 4.31899 4.47534 4.58600 4.59661 4.69407 4.79227 4.80707 4.97450 5.00747 5.10189 5.19796 5.28087 5.32442 5.40943 5.42111 5.46193 5.50360 5.53189 5.55748 5.60952 5.66118 5.69355 5.74471 5.78771 5.86820 5.92629 5.95200 5.98694 6.00326 6.13470 6.20854 6.27487 6.41041 6.49832 6.86113 6.87058 6.89257 7.04735 7.06907 7.34899 7.45563 7.60712 7.69125 8.29776 8.53017 8.95123 9.73463 11.10312 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.039832 B = 0.002357 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.783625 B =11875.633098 C =12103.780024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.118 4.118 4 C 0.055 3.945 5 N -0.539 5.539 6 C 0.057 3.943 7 C -0.103 4.103 8 C 0.086 3.914 9 N -0.684 5.684 10 C 0.065 3.935 11 C -0.078 4.078 12 H 0.066 0.934 13 C -0.133 4.133 14 C 0.015 3.985 15 C -0.593 4.593 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.916 5.916 19 Si 1.068 2.932 20 H -0.288 1.288 21 H -0.283 1.283 22 H -0.289 1.289 23 C -0.146 4.146 24 C 0.059 3.941 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.339 0.661 40 H 0.022 0.978 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.004 0.996 46 H 0.005 0.995 47 H 0.267 0.733 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.031 0.969 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 -21.293 11.689 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.071 4.071 7 C -0.141 4.141 8 C -0.025 4.025 9 N -0.315 5.315 10 C -0.064 4.064 11 C -0.097 4.097 12 H 0.085 0.915 13 C -0.190 4.190 14 C -0.022 4.022 15 C -0.632 4.632 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.553 5.553 19 Si 0.896 3.104 20 H -0.215 1.215 21 H -0.209 1.209 22 H -0.215 1.215 23 C -0.185 4.185 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.040 0.960 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.049 0.951 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.469 -19.822 11.389 25.144 hybrid contribution -1.141 -1.742 -0.294 2.103 sum -11.610 -21.564 11.095 26.886 Atomic orbital electron populations 1.21759 0.95729 1.01524 1.01933 1.21493 0.96015 0.96793 1.01885 1.21646 0.94559 0.96537 1.02799 1.22117 0.95609 0.88940 1.00623 1.61949 1.14114 1.15188 1.35085 1.22105 0.86967 0.97666 1.00397 1.21549 1.01273 0.93204 0.98075 1.21612 0.93011 0.90108 0.97739 1.60655 1.49801 1.01472 1.19525 1.22156 0.98968 0.96422 0.88868 1.21086 0.97653 0.90933 0.99987 0.91546 1.21723 0.97779 1.01433 0.98065 1.19233 0.95419 0.96185 0.91411 1.22038 1.46680 0.99016 0.95417 0.93205 1.25837 0.95350 1.05141 0.92853 1.70779 1.44419 1.17879 1.22187 0.83563 0.76319 0.74889 0.75609 1.21488 1.20881 1.21523 1.22335 0.98047 0.95894 1.02250 1.22062 1.00662 0.94425 0.89831 0.92838 0.92644 0.92770 0.92241 0.92012 0.91086 0.91940 0.95118 0.90883 0.95069 0.90756 0.90852 0.91127 0.91170 0.84139 0.95976 0.91796 0.91776 0.94168 0.94769 0.97743 0.97673 0.92223 0.90978 0.91609 0.95074 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.15 0.37 -0.52 16 2 C -0.12 -0.77 5.93 -26.73 -0.16 -0.93 16 3 C -0.12 -0.87 5.14 -26.73 -0.14 -1.01 16 4 C 0.05 0.45 4.96 -3.82 -0.02 0.43 16 5 N -0.54 -5.29 4.66 -234.66 -1.09 -6.38 16 6 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 7 C -0.10 -1.14 5.70 -26.65 -0.15 -1.29 16 8 C 0.09 1.08 2.53 -67.59 -0.17 0.91 16 9 N -0.68 -10.18 6.25 -106.59 -0.67 -10.85 16 10 C 0.06 1.14 4.94 -3.82 -0.02 1.12 16 11 C -0.08 -1.62 2.54 -90.62 -0.23 -1.85 16 12 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.13 -2.54 8.77 37.16 0.33 -2.21 16 14 C 0.01 0.39 3.76 -27.88 -0.10 0.28 16 15 C -0.59 -17.00 8.41 -34.44 -0.29 -17.29 16 16 H 0.05 1.41 7.06 -52.49 -0.37 1.03 16 17 C 0.01 0.33 5.46 -17.82 -0.10 0.24 16 18 N -0.92 -28.53 13.65 55.43 0.76 -27.77 16 19 Si 1.07 25.73 29.90 -169.99 -5.08 20.64 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.15 -1.67 5.35 -26.65 -0.14 -1.81 16 24 C 0.06 0.60 5.29 -3.83 -0.02 0.58 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 32 H 0.03 0.26 8.12 -51.93 -0.42 -0.17 16 33 H 0.07 0.55 7.99 -51.93 -0.41 0.14 16 34 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.65 8.02 -51.93 -0.42 0.23 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.95 7.80 -51.93 -0.41 0.54 16 39 H 0.34 4.88 6.70 -39.29 -0.26 4.62 16 40 H 0.02 0.39 7.51 -51.92 -0.39 0.00 16 41 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 42 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 45 H 0.00 0.12 8.00 -51.93 -0.42 -0.30 16 46 H 0.01 0.14 8.01 -51.93 -0.42 -0.28 16 47 H 0.27 8.31 7.22 -40.82 -0.29 8.01 16 48 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 49 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 50 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.07 0.71 6.21 -51.92 -0.32 0.39 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -30.07 384.06 -11.44 -41.51 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -10.27 Total: -0.10 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -0.87 Total: -22.84 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -1.00 Total: -45.00 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.07 -11.44 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602537085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.733 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds