Wall clock time and date at job start Tue Mar 31 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46740 * 2 1 4 4 N 1.46901 * 109.46991 * 119.99678 * 2 1 3 5 5 C 1.46845 * 110.99920 * 298.95746 * 4 2 1 6 6 C 1.53040 * 109.52217 * 185.84159 * 5 4 2 7 7 C 1.53119 * 109.27556 * 300.81672 * 6 5 4 8 8 C 1.53123 * 109.16047 * 57.65533 * 7 6 5 9 9 H 1.09000 * 109.50135 * 62.32508 * 8 7 6 10 10 C 1.52997 * 109.50338 * 182.40177 * 8 7 6 11 11 N 1.46899 * 109.47254 * 294.99968 * 10 8 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47104 * 55.00175 * 13 12 11 15 15 C 1.53002 * 109.47511 * 295.00239 * 13 12 11 16 16 C 1.53005 * 109.47067 * 175.00065 * 13 12 11 17 17 C 1.50703 * 109.47156 * 184.99862 * 16 13 12 18 18 H 1.07995 * 120.00006 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99732 * 179.97438 * 17 16 13 20 20 N 1.31522 * 120.00188 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99856 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46918 * 90.00357 * 21 19 17 23 23 H 1.48502 * 109.47108 * 210.00217 * 21 19 17 24 24 H 1.48495 * 109.46858 * 330.00175 * 21 19 17 25 25 C 1.46839 * 110.99990 * 63.16448 * 4 2 1 26 26 H 1.08999 * 109.46894 * 300.00461 * 1 2 3 27 27 H 1.09001 * 109.46990 * 60.00089 * 1 2 3 28 28 H 1.08998 * 109.46690 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46850 * 240.00092 * 2 1 3 30 30 H 1.09006 * 109.46873 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47048 * 299.99303 * 3 2 1 32 32 H 1.09000 * 109.47501 * 59.99644 * 3 2 1 33 33 H 1.08994 * 109.46627 * 65.82018 * 5 4 2 34 34 H 1.09004 * 109.46237 * 305.85302 * 5 4 2 35 35 H 1.09003 * 109.50100 * 180.87607 * 6 5 4 36 36 H 1.09002 * 109.53766 * 60.78156 * 6 5 4 37 37 H 1.08994 * 109.52129 * 297.74959 * 7 6 5 38 38 H 1.09006 * 109.57303 * 177.58958 * 7 6 5 39 39 H 1.09002 * 109.47153 * 174.99965 * 10 8 7 40 40 H 1.09001 * 109.46832 * 55.00156 * 10 8 7 41 41 H 1.00908 * 110.99847 * 56.04959 * 11 10 8 42 42 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 43 43 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 44 44 H 1.09004 * 109.46945 * 59.99454 * 15 13 12 45 45 H 1.09000 * 109.47367 * 180.02562 * 15 13 12 46 46 H 1.09000 * 109.46883 * 300.00627 * 15 13 12 47 47 H 1.08997 * 109.46733 * 305.00345 * 16 13 12 48 48 H 1.09001 * 109.46729 * 65.00132 * 16 13 12 49 49 H 0.97000 * 119.99878 * 180.02562 * 20 19 17 50 50 H 1.09006 * 109.46220 * 54.14446 * 25 4 2 51 51 H 1.09005 * 109.46721 * 294.17719 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.5693 -0.0122 2.4205 6 6 2.2148 -0.6720 3.6412 7 6 1.8210 -2.1511 3.6837 8 6 2.2583 -2.8253 2.3803 9 1 3.3434 -2.7737 2.2903 10 6 1.8155 -4.2897 2.3892 11 7 2.5247 -5.0094 3.4555 12 6 2.1233 -6.4220 3.4945 13 6 2.8808 -7.1366 4.6153 14 1 2.7168 -6.6121 5.5566 15 6 4.3764 -7.1496 4.2926 16 6 2.3730 -8.5748 4.7377 17 6 3.0302 -9.2407 5.9191 18 1 3.7388 -8.6929 6.5225 19 6 2.7260 -10.5490 6.2301 20 7 1.8626 -11.2160 5.4955 21 14 3.5400 -11.3743 7.6950 22 1 2.7138 -11.1544 8.9091 23 1 3.6627 -12.8316 7.4370 24 1 4.8905 -10.7931 7.9031 25 6 1.6116 -2.1030 1.1963 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9564 -0.8901 32 1 1.6766 1.9565 0.8899 33 1 0.4847 -0.0864 2.4986 34 1 1.8593 1.0377 2.3793 35 1 1.8682 -0.1768 4.5483 36 1 3.2992 -0.5859 3.5713 37 1 0.7400 -2.2371 3.7935 38 1 2.3126 -2.6357 4.5273 39 1 2.0478 -4.7454 1.4266 40 1 0.7414 -4.3434 2.5668 41 1 2.3771 -4.5670 4.3504 42 1 1.0514 -6.4901 3.6800 43 1 2.3575 -6.8926 2.5396 44 1 4.7381 -6.1250 4.2053 45 1 4.9160 -7.6591 5.0909 46 1 4.5404 -7.6740 3.3512 47 1 1.2923 -8.5676 4.8792 48 1 2.6168 -9.1247 3.8286 49 1 1.6484 -12.1363 5.7146 50 1 1.9324 -2.5717 0.2658 51 1 0.5267 -2.1675 1.2801 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:42 Heat of formation + Delta-G solvation = -31.660049 kcal Electronic energy + Delta-G solvation = -22759.074650 eV Core-core repulsion = 19691.700747 eV Total energy + Delta-G solvation = -3067.373903 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89960 -37.19695 -35.56501 -33.67575 -32.14737 -31.11667 -30.26411 -27.62847 -26.87224 -25.93893 -24.85424 -23.69235 -22.43646 -21.99882 -20.19138 -19.42170 -18.96905 -16.50470 -16.26837 -15.68507 -15.31693 -14.86047 -14.68111 -14.45942 -14.38342 -14.14171 -13.81058 -13.61291 -13.26102 -12.94631 -12.73147 -12.41795 -12.21729 -12.18329 -11.96178 -11.70523 -11.59915 -11.49279 -11.30918 -11.22349 -10.95956 -10.85082 -10.76946 -10.62182 -10.48428 -10.29572 -10.25498 -10.10927 -9.66270 -9.10638 -8.91701 -8.48463 -8.30432 -8.05209 -5.95254 -3.96193 3.34552 3.40779 3.44463 3.59073 4.41649 4.50011 4.57692 4.60633 4.68108 4.74506 4.88919 4.96726 5.11653 5.19140 5.20827 5.27818 5.36369 5.37672 5.40493 5.48447 5.51960 5.55964 5.59182 5.64347 5.71161 5.78634 5.81055 5.89069 5.91524 5.93643 5.98102 6.05931 6.18985 6.21508 6.37226 6.47167 6.60368 6.73854 6.90170 6.90698 7.06404 7.22998 7.24579 7.43262 7.69858 7.74047 7.88984 8.05308 8.49511 9.10277 9.66995 11.16299 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.043328 B = 0.002439 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.085423 B =11477.499376 C =11706.490935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.075 3.925 3 C -0.146 4.146 4 N -0.530 5.530 5 C 0.050 3.950 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.081 4.081 9 H 0.088 0.912 10 C 0.064 3.936 11 N -0.686 5.686 12 C 0.064 3.936 13 C -0.082 4.082 14 H 0.052 0.948 15 C -0.122 4.122 16 C 0.027 3.973 17 C -0.511 4.511 18 H 0.056 0.944 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.890 3.110 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.061 3.939 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.336 0.664 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.053 0.947 46 H 0.039 0.961 47 H 0.012 0.988 48 H 0.016 0.984 49 H 0.259 0.741 50 H 0.073 0.927 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 25.037 -10.078 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.033 4.033 3 C -0.203 4.203 4 N -0.254 5.254 5 C -0.078 4.078 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.100 4.100 9 H 0.106 0.894 10 C -0.066 4.066 11 N -0.317 5.317 12 C -0.065 4.065 13 C -0.101 4.101 14 H 0.071 0.929 15 C -0.180 4.180 16 C -0.011 4.011 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.147 4.147 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.067 4.067 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.154 0.846 42 H 0.040 0.960 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.030 0.970 48 H 0.034 0.966 49 H 0.069 0.931 50 H 0.092 0.908 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.198 24.756 -10.496 26.916 hybrid contribution -1.574 -0.615 1.151 2.045 sum -2.772 24.141 -9.345 26.034 Atomic orbital electron populations 1.22494 0.97782 1.02166 1.02246 1.21702 0.92572 0.95444 0.93605 1.21890 1.01960 0.94908 1.01560 1.62141 1.59569 1.02024 1.01625 1.22173 0.97289 0.98408 0.89912 1.21568 1.01587 0.95566 0.96607 1.21656 1.00504 0.95419 0.98063 1.21179 1.01905 0.93156 0.93750 0.89374 1.21911 0.95171 0.93020 0.96491 1.60556 1.60069 1.03126 1.07948 1.22146 0.96777 0.86998 1.00559 1.21193 0.95227 0.98426 0.95252 0.92941 1.21584 0.96157 0.99548 1.00683 1.19127 0.95928 0.88980 0.97042 1.21244 1.24512 0.96935 1.12264 0.92561 1.25033 0.95364 0.97564 0.96693 1.69972 1.34073 1.10558 1.39137 0.86624 0.79895 0.78635 0.83030 1.20795 1.21322 1.19873 1.22085 0.97514 0.88023 0.99089 0.92443 0.92169 0.92400 0.89978 0.91759 0.92378 0.92546 0.94915 0.90635 0.91787 0.91013 0.92717 0.91221 0.91246 0.95926 0.84598 0.95960 0.91617 0.93899 0.92827 0.94200 0.96995 0.96560 0.93135 0.90818 0.94801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 8.51 37.16 0.32 -1.03 16 2 C 0.08 0.58 2.98 -67.71 -0.20 0.37 16 3 C -0.15 -0.95 8.94 37.16 0.33 -0.62 16 4 N -0.53 -4.79 4.66 -226.69 -1.06 -5.85 16 5 C 0.05 0.42 4.66 -3.83 -0.02 0.40 16 6 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 7 C -0.12 -1.18 5.00 -26.61 -0.13 -1.31 16 8 C -0.08 -0.86 2.56 -90.54 -0.23 -1.09 16 9 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 10 C 0.06 0.79 5.15 -3.83 -0.02 0.77 16 11 N -0.69 -10.06 5.95 -113.78 -0.68 -10.73 16 12 C 0.06 1.13 5.07 -3.82 -0.02 1.11 16 13 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 14 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 15 C -0.12 -2.43 8.89 37.16 0.33 -2.10 16 16 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 17 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 18 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 19 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 21 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.06 0.59 4.26 -3.84 -0.02 0.57 16 26 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.45 6.60 -51.93 -0.34 0.11 16 29 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 6.26 -51.93 -0.33 0.04 16 33 H 0.03 0.28 6.65 -51.93 -0.35 -0.06 16 34 H 0.08 0.58 5.98 -51.93 -0.31 0.27 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.73 6.80 -51.93 -0.35 0.37 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.34 4.71 7.04 -39.29 -0.28 4.44 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 45 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 51 H 0.03 0.33 6.69 -51.93 -0.35 -0.02 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -29.44 378.63 -10.96 -40.40 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -10.09 Total: -1.11 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.56 Total: -18.77 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -1.00 Total: -43.13 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.44 -10.96 -40.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.744 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds