Wall clock time and date at job start Tue Mar 31 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46894 * 109.47515 * 120.00121 * 2 1 3 5 5 C 1.46850 * 110.99957 * 56.04619 * 4 2 1 6 6 C 1.53032 * 109.52555 * 185.84090 * 5 4 2 7 7 C 1.53119 * 109.28015 * 300.81957 * 6 5 4 8 8 C 1.53122 * 109.15803 * 57.65581 * 7 6 5 9 9 H 1.08991 * 109.50473 * 62.28534 * 8 7 6 10 10 C 1.53002 * 109.50301 * 182.40875 * 8 7 6 11 11 N 1.46906 * 109.46685 * 294.99944 * 10 8 7 12 12 C 1.46900 * 110.99740 * 180.02562 * 11 10 8 13 13 C 1.53009 * 109.46946 * 179.97438 * 12 11 10 14 14 H 1.08993 * 109.46838 * 305.00037 * 13 12 11 15 15 C 1.52997 * 109.46852 * 65.00137 * 13 12 11 16 16 C 1.53002 * 109.46837 * 185.00150 * 13 12 11 17 17 C 1.50697 * 109.46876 * 175.00159 * 16 13 12 18 18 H 1.07997 * 120.00258 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00217 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99800 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00335 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46789 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47252 * 119.99975 * 21 19 17 24 24 H 1.48500 * 109.46646 * 239.99870 * 21 19 17 25 25 C 1.46842 * 111.00464 * 180.25521 * 4 2 1 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09005 * 109.46297 * 305.86079 * 5 4 2 34 34 H 1.09001 * 109.46044 * 65.83588 * 5 4 2 35 35 H 1.08999 * 109.50297 * 60.76239 * 6 5 4 36 36 H 1.08998 * 109.50504 * 180.83878 * 6 5 4 37 37 H 1.09002 * 109.52392 * 177.55957 * 7 6 5 38 38 H 1.08998 * 109.52355 * 297.68465 * 7 6 5 39 39 H 1.08998 * 109.47427 * 54.99411 * 10 8 7 40 40 H 1.08997 * 109.47258 * 174.99822 * 10 8 7 41 41 H 1.00899 * 111.00295 * 56.04471 * 11 10 8 42 42 H 1.08998 * 109.47460 * 299.99625 * 12 11 10 43 43 H 1.09001 * 109.47056 * 60.00282 * 12 11 10 44 44 H 1.09000 * 109.46897 * 59.99683 * 15 13 12 45 45 H 1.09000 * 109.46830 * 179.97438 * 15 13 12 46 46 H 1.08999 * 109.47365 * 300.00069 * 15 13 12 47 47 H 1.09003 * 109.47143 * 294.99966 * 16 13 12 48 48 H 1.09002 * 109.47251 * 55.00381 * 16 13 12 49 49 H 0.96996 * 119.99826 * 180.02562 * 20 19 17 50 50 H 1.08998 * 109.46704 * 294.17804 * 25 4 2 51 51 H 1.09000 * 109.46118 * 54.14389 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.4733 -2.0530 1.2815 6 6 1.8855 -2.6904 2.6102 7 6 3.4136 -2.7278 2.7005 8 6 3.9600 -1.3040 2.5638 9 1 3.5937 -0.6929 3.3886 10 6 5.4894 -1.3388 2.5928 11 7 5.9437 -1.8044 3.9100 12 6 7.4105 -1.8501 3.9750 13 6 7.8447 -2.3378 5.3587 14 1 7.3952 -1.7055 6.1243 15 6 7.3855 -3.7837 5.5571 16 6 9.3691 -2.2671 5.4692 17 6 9.7885 -2.6299 6.8704 18 1 9.0426 -2.8857 7.6082 19 6 11.1247 -2.6362 7.2102 20 7 12.0332 -2.3251 6.3116 21 14 11.6447 -3.0866 8.9470 22 1 10.4407 -3.3928 9.7604 23 1 12.5306 -4.2777 8.9053 24 1 12.3762 -1.9467 9.5559 25 6 3.4876 -0.7068 1.2363 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 0.3857 -2.0119 1.2203 34 1 1.8611 -2.6506 0.4564 35 1 1.4865 -2.1011 3.4358 36 1 1.4922 -3.7056 2.6644 37 1 3.7116 -3.1415 3.6640 38 1 3.8107 -3.3500 1.8985 39 1 5.8520 -2.0191 1.8221 40 1 5.8792 -0.3381 2.4067 41 1 5.5433 -2.7031 4.1338 42 1 7.7868 -2.5336 3.2139 43 1 7.8133 -0.8527 3.7988 44 1 7.8350 -4.4159 4.7914 45 1 7.6952 -4.1312 6.5427 46 1 6.2995 -3.8340 5.4783 47 1 9.8174 -2.9662 4.7632 48 1 9.7034 -1.2551 5.2403 49 1 12.9733 -2.3299 6.5505 50 1 3.8659 -1.3106 0.4115 51 1 3.8632 0.3121 1.1424 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:44 Heat of formation + Delta-G solvation = -31.033034 kcal Electronic energy + Delta-G solvation = -22736.779543 eV Core-core repulsion = 19669.432830 eV Total energy + Delta-G solvation = -3067.346714 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76787 -37.20677 -35.56862 -33.74827 -32.22499 -31.06811 -30.49467 -27.78848 -26.86491 -25.80744 -24.80031 -23.77024 -22.10861 -21.78938 -20.20948 -19.83295 -18.86629 -16.76541 -16.37814 -15.77746 -15.27582 -15.12084 -14.60408 -14.25307 -14.18304 -14.01979 -13.83607 -13.51064 -13.26919 -13.01002 -12.74261 -12.47922 -12.29925 -12.10301 -11.91035 -11.78494 -11.70892 -11.41306 -11.33321 -11.16885 -11.14646 -10.86191 -10.76478 -10.63249 -10.49591 -10.31451 -10.20106 -10.08925 -9.68493 -9.11641 -8.91766 -8.52228 -8.30947 -8.07396 -5.95453 -3.96347 3.33709 3.41206 3.45489 3.55380 4.41644 4.50678 4.58529 4.60505 4.64110 4.82724 4.84773 5.02017 5.11065 5.21100 5.26203 5.34573 5.37523 5.38965 5.40392 5.49567 5.52745 5.56091 5.59558 5.65682 5.72331 5.80647 5.82307 5.86166 5.91180 5.95498 5.98366 6.05052 6.08564 6.20641 6.28884 6.38145 6.51203 6.59574 6.89946 6.90934 6.99490 7.13668 7.20854 7.43680 7.71171 7.73864 7.89405 8.05251 8.49271 9.10353 9.66964 11.16148 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040088 B = 0.002472 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.297819 B =11326.318449 C =11744.716956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.147 4.147 4 N -0.532 5.532 5 C 0.052 3.948 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.081 4.081 9 H 0.088 0.912 10 C 0.064 3.936 11 N -0.689 5.689 12 C 0.064 3.936 13 C -0.084 4.084 14 H 0.065 0.935 15 C -0.134 4.134 16 C 0.027 3.973 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.059 3.941 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.070 0.930 41 H 0.337 0.663 42 H 0.022 0.978 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.062 0.938 46 H 0.031 0.969 47 H 0.014 0.986 48 H 0.015 0.985 49 H 0.258 0.742 50 H 0.029 0.971 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.997 2.430 -14.008 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.205 4.205 4 N -0.257 5.257 5 C -0.076 4.076 6 C -0.153 4.153 7 C -0.157 4.157 8 C -0.100 4.100 9 H 0.107 0.893 10 C -0.066 4.066 11 N -0.321 5.321 12 C -0.064 4.064 13 C -0.103 4.103 14 H 0.084 0.916 15 C -0.191 4.191 16 C -0.010 4.010 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.147 4.147 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.069 4.069 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.157 0.843 42 H 0.040 0.960 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.032 0.968 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.047 0.953 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.021 3.331 -13.346 26.818 hybrid contribution 1.009 -1.509 -0.423 1.863 sum -22.012 1.822 -13.769 26.028 Atomic orbital electron populations 1.21921 0.94417 1.01910 1.02228 1.21588 0.95575 0.95180 0.90884 1.21902 1.01257 0.95152 1.02167 1.61948 1.08213 1.16868 1.38689 1.22168 0.99902 0.88381 0.97133 1.21560 0.96083 1.00089 0.97537 1.21660 0.95355 0.96733 1.01922 1.21181 0.94428 0.96588 0.97800 0.89322 1.21916 0.93948 1.00293 0.90480 1.60580 1.09407 1.34080 1.28060 1.22133 0.85707 1.00304 0.98286 1.21219 0.99605 0.95403 0.94071 0.91623 1.21739 0.97705 0.97329 1.02331 1.19119 0.87955 0.97029 0.96931 1.21280 0.91755 1.45404 0.96475 0.92501 1.25033 0.96921 0.95647 0.97066 1.69980 1.00752 1.49410 1.33578 0.86571 0.78589 0.78002 0.85058 1.19744 1.21151 1.21092 1.22141 0.87026 1.00999 0.96713 0.91644 0.92555 0.92341 0.94584 0.91610 0.92378 0.92381 0.90481 0.95339 0.90955 0.91733 0.91287 0.92702 0.95930 0.91188 0.84348 0.96013 0.91536 0.94099 0.91858 0.95026 0.96799 0.96656 0.93186 0.95263 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.85 37.16 0.33 -0.66 16 2 C 0.08 0.61 2.68 -67.72 -0.18 0.43 16 3 C -0.15 -1.10 8.96 37.16 0.33 -0.77 16 4 N -0.53 -4.95 4.53 -226.70 -1.03 -5.97 16 5 C 0.05 0.45 5.14 -3.83 -0.02 0.43 16 6 C -0.11 -1.02 6.09 -26.65 -0.16 -1.18 16 7 C -0.12 -1.20 5.00 -26.61 -0.13 -1.33 16 8 C -0.08 -0.88 2.56 -90.54 -0.23 -1.11 16 9 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 10 C 0.06 0.80 5.15 -3.82 -0.02 0.78 16 11 N -0.69 -10.34 6.50 -113.77 -0.74 -11.08 16 12 C 0.06 1.14 5.14 -3.82 -0.02 1.13 16 13 C -0.08 -1.75 2.55 -90.62 -0.23 -1.98 16 14 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 15 C -0.13 -2.53 8.78 37.16 0.33 -2.21 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 17 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 18 H 0.06 1.57 7.05 -52.49 -0.37 1.20 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 21 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.06 0.59 4.50 -3.84 -0.02 0.57 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.36 6.22 -51.93 -0.32 0.04 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 6.28 -51.93 -0.33 0.12 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.59 5.91 -51.93 -0.31 0.29 16 34 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.73 6.80 -51.93 -0.35 0.38 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.34 4.81 5.30 -39.29 -0.21 4.60 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 46 H 0.03 0.50 6.68 -51.93 -0.35 0.16 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 51 H 0.08 0.77 6.00 -51.93 -0.31 0.46 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -29.51 379.05 -10.95 -40.46 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -10.07 Total: -0.89 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -0.54 Total: -18.60 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.03 Total: -43.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.51 -10.95 -40.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.425 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds