Wall clock time and date at job start Tue Mar 31 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46863 * 2 1 4 4 N 1.46903 * 109.46775 * 120.00360 * 2 1 3 5 5 C 1.46847 * 110.99577 * 299.20573 * 4 2 1 6 6 C 1.53042 * 109.52097 * 174.16168 * 5 4 2 7 7 C 1.53126 * 109.30704 * 59.16178 * 6 5 4 8 8 C 1.53124 * 109.16054 * 302.40600 * 7 6 5 9 9 H 1.09004 * 109.49869 * 297.63477 * 8 7 6 10 10 C 1.52997 * 109.50404 * 177.55755 * 8 7 6 11 11 N 1.46899 * 109.47254 * 65.07601 * 10 8 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.47104 * 55.00175 * 13 12 11 15 15 C 1.53002 * 109.47511 * 295.00239 * 13 12 11 16 16 C 1.53005 * 109.47067 * 175.00065 * 13 12 11 17 17 C 1.50703 * 109.47156 * 184.99862 * 16 13 12 18 18 H 1.07995 * 120.00006 * 0.02562 * 17 16 13 19 19 C 1.37875 * 119.99732 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99781 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00230 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47514 * 89.99668 * 21 19 17 23 23 H 1.48504 * 109.47188 * 210.00046 * 21 19 17 24 24 H 1.48506 * 109.46958 * 329.99516 * 21 19 17 25 25 C 1.46844 * 110.99751 * 175.00101 * 4 2 1 26 26 H 1.09001 * 109.47431 * 300.00080 * 1 2 3 27 27 H 1.09003 * 109.47051 * 60.00175 * 1 2 3 28 28 H 1.09005 * 109.47335 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47007 * 240.00243 * 2 1 3 30 30 H 1.09004 * 109.46761 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47781 * 299.99933 * 3 2 1 32 32 H 1.09000 * 109.47110 * 60.00307 * 3 2 1 33 33 H 1.08990 * 109.46983 * 294.17794 * 5 4 2 34 34 H 1.09002 * 109.46198 * 54.16082 * 5 4 2 35 35 H 1.09000 * 109.50422 * 179.12214 * 6 5 4 36 36 H 1.09001 * 109.50390 * 299.24552 * 6 5 4 37 37 H 1.09004 * 109.55448 * 182.48362 * 7 6 5 38 38 H 1.08994 * 109.48945 * 62.29036 * 7 6 5 39 39 H 1.09002 * 109.47153 * 305.07597 * 10 8 7 40 40 H 1.09001 * 109.46832 * 185.07788 * 10 8 7 41 41 H 1.00908 * 110.99847 * 56.04959 * 11 10 8 42 42 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 43 43 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 44 44 H 1.09004 * 109.46945 * 59.99454 * 15 13 12 45 45 H 1.09000 * 109.47367 * 180.02562 * 15 13 12 46 46 H 1.09000 * 109.46883 * 300.00627 * 15 13 12 47 47 H 1.08997 * 109.46733 * 305.00345 * 16 13 12 48 48 H 1.09001 * 109.46729 * 65.00132 * 16 13 12 49 49 H 0.97000 * 120.00091 * 179.97438 * 20 19 17 50 50 H 1.09009 * 109.46057 * 65.82147 * 25 4 2 51 51 H 1.09002 * 109.45325 * 305.84903 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 1.5642 -0.0158 2.4205 6 6 1.9679 -0.8419 3.6439 7 6 3.4904 -1.0041 3.6654 8 6 3.9437 -1.6664 2.3613 9 1 3.5060 -2.6620 2.2876 10 6 5.4696 -1.7770 2.3481 11 7 5.9039 -2.6879 3.4156 12 6 7.3669 -2.8193 3.4328 13 6 7.7800 -3.7739 4.5548 14 1 7.2597 -4.7240 4.4334 15 6 7.4128 -3.1606 5.9075 16 6 9.2908 -4.0084 4.4944 17 6 9.6801 -5.0420 5.5198 18 1 8.9254 -5.4873 6.1511 19 6 10.9995 -5.4197 5.6513 20 7 11.3393 -6.3212 6.5464 21 14 12.3048 -4.6499 4.5590 22 1 12.8461 -3.4334 5.2165 23 1 13.4036 -5.6242 4.3388 24 1 11.7021 -4.2801 3.2530 25 6 3.4826 -0.8165 1.1752 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.0227 0.9711 2.4814 34 1 0.4795 0.0886 2.3949 35 1 1.6435 -0.3316 4.5508 36 1 1.4987 -1.8243 3.5907 37 1 3.7789 -1.6290 4.5107 38 1 3.9592 -0.0246 3.7585 39 1 5.9067 -0.7919 2.5109 40 1 5.7974 -2.1651 1.3836 41 1 5.4612 -3.5900 3.3235 42 1 7.7075 -3.2148 2.4759 43 1 7.8174 -1.8414 3.6029 44 1 6.3365 -2.9934 5.9504 45 1 7.7075 -3.8405 6.7068 46 1 7.9330 -2.2104 6.0288 47 1 9.5641 -4.3619 3.5003 48 1 9.8121 -3.0744 4.7040 49 1 12.2676 -6.5873 6.6387 50 1 3.9322 0.1743 1.2418 51 1 3.7911 -1.2935 0.2449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602543357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:46 Heat of formation + Delta-G solvation = -28.637853 kcal Electronic energy + Delta-G solvation = -22815.243653 eV Core-core repulsion = 19748.000802 eV Total energy + Delta-G solvation = -3067.242851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88268 -37.24404 -35.62808 -33.74035 -32.15282 -31.12578 -30.37917 -27.67580 -27.42206 -25.98585 -24.74529 -23.67482 -22.33832 -21.79162 -20.36080 -19.40139 -18.96979 -16.76262 -16.45760 -15.54760 -15.36726 -14.91248 -14.69341 -14.58304 -14.33987 -14.00796 -13.81095 -13.69369 -13.26589 -13.03587 -12.79164 -12.47552 -12.37945 -12.18241 -11.98904 -11.83508 -11.62658 -11.58381 -11.52415 -11.25917 -10.95906 -10.93262 -10.73444 -10.65516 -10.48511 -10.34975 -10.28520 -9.75575 -9.71062 -9.35546 -9.02445 -8.50659 -8.49327 -8.12366 -5.99598 -3.96232 3.32974 3.40215 3.43899 3.56962 4.35953 4.48896 4.52607 4.64130 4.67639 4.78048 4.91158 4.94948 5.09430 5.17087 5.20363 5.26120 5.33947 5.35828 5.40093 5.47222 5.50340 5.52594 5.60132 5.62714 5.65834 5.75159 5.80552 5.82389 5.88575 5.92786 6.02452 6.03030 6.07193 6.30433 6.37361 6.37804 6.46619 6.63036 6.86667 6.89239 6.89724 7.07554 7.18617 7.30043 7.35636 7.50129 7.65154 7.85738 8.60345 9.06472 9.63439 11.13876 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.038764 B = 0.002580 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.150940 B =10849.442084 C =11261.466913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.530 5.530 5 C 0.050 3.950 6 C -0.119 4.119 7 C -0.106 4.106 8 C -0.079 4.079 9 H 0.076 0.924 10 C 0.064 3.936 11 N -0.683 5.683 12 C 0.062 3.938 13 C -0.073 4.073 14 H 0.059 0.941 15 C -0.124 4.124 16 C -0.010 4.010 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.064 3.936 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.061 3.939 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.025 0.975 41 H 0.338 0.662 42 H 0.022 0.978 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.038 0.962 47 H 0.012 0.988 48 H 0.011 0.989 49 H 0.262 0.738 50 H 0.035 0.965 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.510 15.108 -12.883 29.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.247 4.247 4 N -0.254 5.254 5 C -0.078 4.078 6 C -0.157 4.157 7 C -0.144 4.144 8 C -0.099 4.099 9 H 0.095 0.905 10 C -0.066 4.066 11 N -0.314 5.314 12 C -0.067 4.067 13 C -0.092 4.092 14 H 0.078 0.922 15 C -0.181 4.181 16 C -0.047 4.047 17 C -0.549 4.549 18 H 0.092 0.908 19 C -0.137 4.137 20 N -0.545 5.545 21 Si 0.706 3.294 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.192 1.192 25 C -0.068 4.068 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.156 0.844 42 H 0.040 0.960 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.030 0.970 48 H 0.029 0.971 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.563 15.031 -12.327 29.031 hybrid contribution 1.437 0.669 -1.385 2.105 sum -20.125 15.700 -13.712 28.975 Atomic orbital electron populations 1.21876 0.94356 1.02462 1.01559 1.21695 0.95745 0.92353 0.93538 1.22489 1.01612 0.98267 1.02296 1.62143 1.10774 1.50829 1.01677 1.22179 1.00143 0.95519 0.89911 1.21632 0.96953 1.00676 0.96431 1.21513 0.94235 1.00629 0.98002 1.21150 0.94522 0.99819 0.94376 0.90521 1.21924 0.94279 0.97768 0.92651 1.60483 1.07911 1.15914 1.47090 1.22162 0.86378 1.00214 0.97913 1.21000 0.98117 0.96497 0.93607 0.92229 1.21592 0.99308 0.99855 0.97348 1.19618 0.91354 0.96726 0.97049 1.21139 0.94018 1.21368 1.18407 0.90814 1.25037 0.98610 0.94849 0.95185 1.69916 1.17853 1.31951 1.34772 0.86800 0.81555 0.79168 0.81859 1.20393 1.21520 1.19161 1.22088 0.87154 0.98682 0.98851 0.92529 0.92400 0.91795 0.90105 0.92471 0.92181 0.92343 0.94854 0.90783 0.91797 0.91292 0.90239 0.92793 0.91493 0.95724 0.84428 0.95959 0.91718 0.93665 0.92310 0.94325 0.97000 0.97108 0.92863 0.94680 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.99 37.16 0.33 -0.60 16 2 C 0.08 0.56 2.96 -67.71 -0.20 0.36 16 3 C -0.19 -1.30 8.50 37.15 0.32 -0.99 16 4 N -0.53 -4.69 4.64 -226.69 -1.05 -5.75 16 5 C 0.05 0.42 4.63 -3.83 -0.02 0.40 16 6 C -0.12 -1.06 6.09 -26.64 -0.16 -1.23 16 7 C -0.11 -1.08 5.15 -26.60 -0.14 -1.22 16 8 C -0.08 -0.80 2.49 -90.54 -0.23 -1.03 16 9 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 10 C 0.06 0.74 5.08 -3.83 -0.02 0.72 16 11 N -0.68 -9.31 5.46 -113.78 -0.62 -9.93 16 12 C 0.06 1.01 5.07 -3.82 -0.02 0.99 16 13 C -0.07 -1.45 2.48 -90.62 -0.22 -1.67 16 14 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 15 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 16 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 17 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 18 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 19 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 25 C 0.06 0.56 4.31 -3.84 -0.02 0.54 16 26 H 0.06 0.36 6.30 -51.93 -0.33 0.03 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.06 0.43 6.65 -51.93 -0.35 0.09 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.42 6.52 -51.93 -0.34 0.08 16 33 H 0.03 0.29 6.62 -51.93 -0.34 -0.05 16 34 H 0.07 0.57 6.03 -51.93 -0.31 0.26 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.92 7.83 -51.93 -0.41 0.52 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.34 4.46 8.73 -39.29 -0.34 4.12 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.78 7.75 -51.93 -0.40 0.37 16 45 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 48 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.04 0.33 6.73 -51.92 -0.35 -0.02 16 51 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -29.63 377.38 -10.61 -40.24 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -10.18 Total: -1.01 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.55 Total: -19.20 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.90 Total: -43.09 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.63 -10.61 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602543357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.604 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds