Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09000 * 109.45888 * 304.23643 * 3 2 1 5 5 C 1.53036 * 109.46303 * 64.20719 * 3 2 1 6 6 C 1.53114 * 109.27933 * 179.19640 * 5 3 2 7 7 C 1.53120 * 109.16047 * 302.34414 * 6 5 3 8 8 C 1.53041 * 109.27880 * 57.65032 * 7 6 5 9 9 N 1.46844 * 109.52771 * 300.82584 * 8 7 6 10 10 C 1.46900 * 111.00286 * 185.83615 * 9 8 7 11 11 C 1.53005 * 109.46722 * 51.61060 * 10 9 8 12 12 N 1.46900 * 109.46722 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99764 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47037 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.47106 * 54.99240 * 14 13 12 16 16 C 1.53006 * 109.46746 * 294.99473 * 14 13 12 17 17 C 1.52995 * 109.47155 * 175.00169 * 14 13 12 18 18 C 1.50701 * 109.47407 * 184.99912 * 17 14 13 19 19 H 1.08003 * 119.99695 * 359.97438 * 18 17 14 20 20 C 1.37876 * 120.00494 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99778 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99988 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47654 * 59.99653 * 22 20 18 24 24 H 1.48500 * 109.46765 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46866 * 299.99418 * 22 20 18 26 26 H 1.08994 * 109.47448 * 294.82366 * 1 2 3 27 27 H 1.09001 * 109.47004 * 174.82137 * 1 2 3 28 28 H 1.09002 * 109.47408 * 54.82606 * 1 2 3 29 29 H 1.08994 * 109.47277 * 120.00173 * 2 1 3 30 30 H 1.09003 * 109.47004 * 240.00030 * 2 1 3 31 31 H 1.09006 * 109.50115 * 299.13142 * 5 3 2 32 32 H 1.09002 * 109.50407 * 59.24956 * 5 3 2 33 33 H 1.08993 * 109.52747 * 182.44111 * 6 5 3 34 34 H 1.09001 * 109.52438 * 62.24526 * 6 5 3 35 35 H 1.09004 * 109.50156 * 297.71535 * 7 6 5 36 36 H 1.08996 * 109.50571 * 177.59277 * 7 6 5 37 37 H 1.09002 * 109.46574 * 180.80666 * 8 7 6 38 38 H 1.09005 * 109.45052 * 60.83353 * 8 7 6 39 39 H 1.08995 * 109.46802 * 171.60635 * 10 9 8 40 40 H 1.08992 * 109.47031 * 291.60807 * 10 9 8 41 41 H 1.08995 * 109.46695 * 299.99674 * 11 10 9 42 42 H 1.09003 * 109.47084 * 59.99946 * 11 10 9 43 43 H 1.00898 * 110.99886 * 56.04182 * 12 11 10 44 44 H 1.09004 * 109.46913 * 299.99858 * 13 12 11 45 45 H 1.08994 * 109.47395 * 59.99777 * 13 12 11 46 46 H 1.08996 * 109.46740 * 180.02562 * 16 14 13 47 47 H 1.08999 * 109.47139 * 300.00311 * 16 14 13 48 48 H 1.09005 * 109.46603 * 60.00348 * 16 14 13 49 49 H 1.09010 * 109.47213 * 304.99367 * 17 14 13 50 50 H 1.09000 * 109.47563 * 64.99325 * 17 14 13 51 51 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9776 -0.8497 5 6 1.6180 2.1326 1.2992 6 6 2.1475 3.5692 1.3036 7 6 3.6704 3.5441 1.1467 8 6 4.0329 2.8130 -0.1480 9 7 3.5048 1.4436 -0.1029 10 6 3.9513 0.6684 -1.2681 11 6 5.4716 0.7785 -1.4017 12 7 5.9180 0.0039 -2.5673 13 6 7.3759 0.0862 -2.7270 14 6 7.8021 -0.7306 -3.9486 15 1 7.2490 -0.3904 -4.8240 16 6 7.5050 -2.2110 -3.7011 17 6 9.3016 -0.5447 -4.1885 18 6 9.6980 -1.2488 -5.4606 19 1 8.9546 -1.7765 -6.0398 20 6 11.0094 -1.2194 -5.8851 21 7 11.9144 -0.5763 -5.1802 22 14 11.5004 -2.0916 -7.4623 23 1 10.7413 -1.5177 -8.6024 24 1 12.9556 -1.9102 -7.6958 25 1 11.1945 -3.5398 -7.3428 26 1 -0.3634 0.4314 0.9326 27 1 -0.3633 -1.0235 -0.0928 28 1 -0.3634 0.5920 -0.8400 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.5301 2.1455 1.3676 32 1 2.0303 1.5900 2.1499 33 1 1.8863 4.0508 2.2459 34 1 1.7051 4.1231 0.4755 35 1 4.1151 3.0237 1.9951 36 1 4.0490 4.5653 1.1062 37 1 5.1172 2.7808 -0.2556 38 1 3.5993 3.3416 -0.9970 39 1 3.6729 -0.3772 -1.1371 40 1 3.4781 1.0604 -2.1682 41 1 5.7499 1.8242 -1.5326 42 1 5.9448 0.3865 -0.5014 43 1 5.4444 0.3062 -3.4053 44 1 7.6680 1.1271 -2.8664 45 1 7.8620 -0.3113 -1.8361 46 1 7.8090 -2.7929 -4.5712 47 1 8.0580 -2.5512 -2.8256 48 1 6.4366 -2.3434 -3.5302 49 1 9.5265 0.5183 -4.2765 50 1 9.8585 -0.9658 -3.3515 51 1 12.8370 -0.5553 -5.4790 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = -31.903949 kcal Electronic energy + Delta-G solvation = -22633.952686 eV Core-core repulsion = 19566.568206 eV Total energy + Delta-G solvation = -3067.384480 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79827 -36.97461 -34.81761 -34.28273 -33.13045 -31.75365 -29.49090 -28.25537 -26.67575 -25.09215 -24.61985 -23.83561 -22.22328 -21.18651 -21.02342 -19.89225 -18.96805 -16.51870 -16.25883 -15.70475 -15.26311 -15.12253 -14.66734 -14.47883 -14.40393 -14.03779 -13.87067 -13.68399 -13.28404 -13.01229 -12.93948 -12.39031 -12.18976 -12.00878 -11.80170 -11.74188 -11.50169 -11.43411 -11.31627 -11.22478 -10.99754 -10.89208 -10.82331 -10.70841 -10.45494 -10.26633 -10.26329 -10.16851 -9.66804 -9.12095 -8.93871 -8.46210 -8.30660 -8.07575 -5.95552 -3.96665 3.35774 3.39992 3.42560 3.57027 4.39395 4.48997 4.50014 4.62557 4.67036 4.82434 4.93488 5.00149 5.07946 5.10521 5.14240 5.27328 5.33762 5.40105 5.40844 5.44303 5.53683 5.62386 5.64372 5.70113 5.73552 5.76676 5.80793 5.87192 5.90943 5.98675 6.01117 6.02032 6.05464 6.17126 6.18899 6.44951 6.58023 6.71863 6.92635 6.97433 7.05378 7.21270 7.22924 7.39301 7.66474 7.72255 7.88072 8.04791 8.48822 9.09522 9.66489 11.16009 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.032264 B = 0.002501 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.644571 B =11193.136493 C =11843.004401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.088 3.912 4 H 0.037 0.963 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.048 3.952 9 N -0.532 5.532 10 C 0.057 3.943 11 C 0.058 3.942 12 N -0.687 5.687 13 C 0.066 3.934 14 C -0.082 4.082 15 H 0.052 0.948 16 C -0.122 4.122 17 C 0.027 3.973 18 C -0.513 4.513 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.029 0.971 39 H 0.088 0.912 40 H 0.028 0.972 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.335 0.665 44 H 0.023 0.977 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.039 0.961 48 H 0.042 0.958 49 H 0.012 0.988 50 H 0.016 0.984 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.436 6.678 13.283 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.020 4.020 4 H 0.055 0.945 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.080 4.080 9 N -0.258 5.258 10 C -0.071 4.071 11 C -0.072 4.072 12 N -0.318 5.318 13 C -0.062 4.062 14 C -0.101 4.101 15 H 0.071 0.929 16 C -0.180 4.180 17 C -0.010 4.010 18 C -0.551 4.551 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.107 0.893 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.041 0.959 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.030 0.970 50 H 0.035 0.965 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.025 5.905 14.056 26.787 hybrid contribution 0.242 0.943 -1.972 2.200 sum -21.783 6.848 12.084 25.834 Atomic orbital electron populations 1.21794 0.95698 1.01721 1.01680 1.21669 0.95476 0.95836 1.03076 1.21649 0.87141 0.96142 0.97104 0.94500 1.21665 1.00076 0.95485 0.97715 1.21592 0.96028 0.96855 1.01511 1.21591 0.95887 0.99779 0.98224 1.22210 1.00700 0.88297 0.96752 1.61918 1.09348 1.13212 1.41272 1.22120 0.95187 0.99312 0.90456 1.22029 0.94285 0.95423 0.95459 1.60436 1.07183 1.58198 1.06008 1.22135 0.85797 0.98133 1.00178 1.21202 0.99732 0.94844 0.94350 0.92913 1.21585 0.99185 0.96324 1.00876 1.19119 0.88391 0.96738 0.96782 1.21204 0.93593 1.32615 1.07691 0.92629 1.25024 0.96801 0.95673 0.97084 1.69957 1.02173 1.42786 1.38807 0.86685 0.77290 0.80239 0.83946 1.20342 1.21383 1.20248 0.92575 0.92557 0.92968 0.91045 0.91393 0.91534 0.91056 0.91914 0.92499 0.91027 0.91708 0.89960 0.95257 0.89350 0.95368 0.95559 0.90403 0.84812 0.95894 0.91490 0.92813 0.94155 0.93942 0.96979 0.96536 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.52 37.16 0.35 -0.68 16 2 C -0.12 -1.02 5.13 -26.73 -0.14 -1.16 16 3 C 0.09 0.78 1.92 -67.72 -0.13 0.65 16 4 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 5 C -0.11 -0.86 5.09 -26.65 -0.14 -1.00 16 6 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 7 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 8 C 0.05 0.47 5.03 -3.83 -0.02 0.45 16 9 N -0.53 -5.46 4.60 -226.68 -1.04 -6.51 16 10 C 0.06 0.63 4.71 -3.82 -0.02 0.61 16 11 C 0.06 0.73 5.18 -3.82 -0.02 0.71 16 12 N -0.69 -10.11 5.95 -113.78 -0.68 -10.78 16 13 C 0.07 1.17 5.07 -3.82 -0.02 1.15 16 14 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 15 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 17 C 0.03 0.71 4.45 -27.89 -0.12 0.58 16 18 C -0.51 -14.52 8.41 -34.44 -0.29 -14.81 16 19 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 22 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H 0.06 0.35 6.82 -51.93 -0.35 -0.01 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.61 6.17 -51.93 -0.32 0.29 16 31 H 0.07 0.44 6.70 -51.93 -0.35 0.10 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.85 5.84 -51.93 -0.30 0.55 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 1.02 6.38 -51.93 -0.33 0.69 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.03 0.33 6.19 -51.93 -0.32 0.01 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.33 4.68 8.73 -39.29 -0.34 4.33 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 47 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 49 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -29.34 381.56 -11.31 -40.65 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -10.20 Total: -1.23 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -0.85 Total: -18.23 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.98 Total: -43.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.34 -11.31 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.743 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds