Wall clock time and date at job start Tue Mar 31 2020 05:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09000 * 109.45888 * 304.23643 * 3 2 1 5 5 C 1.53036 * 109.46303 * 64.20719 * 3 2 1 6 6 C 1.53114 * 109.27933 * 179.19640 * 5 3 2 7 7 C 1.53120 * 109.16047 * 302.34414 * 6 5 3 8 8 C 1.53041 * 109.27880 * 57.65032 * 7 6 5 9 9 N 1.46844 * 109.52771 * 300.82584 * 8 7 6 10 10 C 1.46900 * 111.00286 * 185.83615 * 9 8 7 11 11 C 1.53005 * 109.46722 * 51.61060 * 10 9 8 12 12 N 1.46900 * 109.46722 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99764 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47037 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.46598 * 304.99525 * 14 13 12 16 16 C 1.52999 * 109.47224 * 64.99569 * 14 13 12 17 17 C 1.52997 * 109.47083 * 184.99888 * 14 13 12 18 18 C 1.50700 * 109.46948 * 174.99696 * 17 14 13 19 19 H 1.07997 * 120.00170 * 359.97438 * 18 17 14 20 20 C 1.37885 * 119.99703 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99506 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47351 * 89.99945 * 22 20 18 24 24 H 1.48503 * 109.46625 * 209.99908 * 22 20 18 25 25 H 1.48500 * 109.47023 * 329.99415 * 22 20 18 26 26 H 1.08994 * 109.47448 * 294.82366 * 1 2 3 27 27 H 1.09001 * 109.47004 * 174.82137 * 1 2 3 28 28 H 1.09002 * 109.47408 * 54.82606 * 1 2 3 29 29 H 1.08994 * 109.47277 * 120.00173 * 2 1 3 30 30 H 1.09003 * 109.47004 * 240.00030 * 2 1 3 31 31 H 1.09006 * 109.50115 * 299.13142 * 5 3 2 32 32 H 1.09002 * 109.50407 * 59.24956 * 5 3 2 33 33 H 1.08993 * 109.52747 * 182.44111 * 6 5 3 34 34 H 1.09001 * 109.52438 * 62.24526 * 6 5 3 35 35 H 1.09004 * 109.50156 * 297.71535 * 7 6 5 36 36 H 1.08996 * 109.50571 * 177.59277 * 7 6 5 37 37 H 1.09002 * 109.46574 * 180.80666 * 8 7 6 38 38 H 1.09005 * 109.45052 * 60.83353 * 8 7 6 39 39 H 1.08995 * 109.46802 * 171.60635 * 10 9 8 40 40 H 1.08992 * 109.47031 * 291.60807 * 10 9 8 41 41 H 1.08995 * 109.46695 * 299.99674 * 11 10 9 42 42 H 1.09003 * 109.47084 * 59.99946 * 11 10 9 43 43 H 1.00898 * 110.99886 * 56.04182 * 12 11 10 44 44 H 1.09004 * 109.46913 * 299.99858 * 13 12 11 45 45 H 1.08994 * 109.47395 * 59.99777 * 13 12 11 46 46 H 1.08994 * 109.46910 * 60.00488 * 16 14 13 47 47 H 1.09000 * 109.46652 * 180.02562 * 16 14 13 48 48 H 1.08993 * 109.46970 * 300.00136 * 16 14 13 49 49 H 1.08997 * 109.47400 * 294.99833 * 17 14 13 50 50 H 1.09005 * 109.47104 * 54.99686 * 17 14 13 51 51 H 0.97008 * 119.99909 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9776 -0.8497 5 6 1.6180 2.1326 1.2992 6 6 2.1475 3.5692 1.3036 7 6 3.6704 3.5441 1.1467 8 6 4.0329 2.8130 -0.1480 9 7 3.5048 1.4436 -0.1029 10 6 3.9513 0.6684 -1.2681 11 6 5.4716 0.7785 -1.4017 12 7 5.9180 0.0039 -2.5673 13 6 7.3759 0.0862 -2.7270 14 6 7.8021 -0.7306 -3.9486 15 1 7.4326 -1.7513 -3.8500 16 6 7.2199 -0.0974 -5.2139 17 6 9.3290 -0.7479 -4.0431 18 6 9.7522 -1.6518 -5.1723 19 1 9.0066 -2.1631 -5.7631 20 6 11.0913 -1.8259 -5.4511 21 7 11.4605 -2.6151 -6.4361 22 14 12.3808 -0.9420 -4.4287 23 1 12.7655 -1.7927 -3.2740 24 1 13.5775 -0.6735 -5.2661 25 1 11.8247 0.3428 -3.9336 26 1 -0.3634 0.4314 0.9326 27 1 -0.3633 -1.0235 -0.0928 28 1 -0.3634 0.5920 -0.8400 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.5301 2.1455 1.3676 32 1 2.0303 1.5900 2.1499 33 1 1.8863 4.0508 2.2459 34 1 1.7051 4.1231 0.4755 35 1 4.1151 3.0237 1.9951 36 1 4.0490 4.5653 1.1062 37 1 5.1172 2.7808 -0.2556 38 1 3.5993 3.3416 -0.9970 39 1 3.6729 -0.3772 -1.1371 40 1 3.4781 1.0604 -2.1682 41 1 5.7499 1.8242 -1.5326 42 1 5.9448 0.3865 -0.5014 43 1 5.4444 0.3062 -3.4053 44 1 7.6680 1.1271 -2.8664 45 1 7.8620 -0.3113 -1.8361 46 1 7.5894 0.9233 -5.3124 47 1 7.5231 -0.6796 -6.0840 48 1 6.1321 -0.0851 -5.1464 49 1 9.6930 0.2623 -4.2305 50 1 9.7469 -1.1167 -3.1063 51 1 12.4026 -2.7380 -6.6321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:18 Heat of formation + Delta-G solvation = -27.949121 kcal Electronic energy + Delta-G solvation = -22696.002515 eV Core-core repulsion = 19628.789529 eV Total energy + Delta-G solvation = -3067.212985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83820 -37.16540 -34.90466 -34.31145 -33.13738 -31.82813 -29.52113 -28.49265 -27.18003 -25.26962 -24.65795 -23.88916 -21.89425 -21.19664 -21.04675 -19.91822 -18.95334 -16.82762 -16.51226 -15.88840 -15.31919 -15.14943 -14.69691 -14.56449 -14.43838 -13.97640 -13.76616 -13.69077 -13.41804 -13.15010 -12.95313 -12.53883 -12.39641 -12.06617 -11.99221 -11.82522 -11.79106 -11.59146 -11.40988 -11.34614 -11.03075 -10.98355 -10.90070 -10.66951 -10.47763 -10.35756 -10.29674 -9.88464 -9.64401 -9.42592 -9.03776 -8.50424 -8.49520 -8.17952 -6.00028 -3.96778 3.33245 3.40427 3.44100 3.52550 4.35580 4.46483 4.48795 4.57875 4.61167 4.78847 4.90484 4.95661 5.03830 5.07270 5.10780 5.22971 5.29737 5.33631 5.37608 5.40839 5.49296 5.58538 5.60813 5.65792 5.67326 5.68293 5.75248 5.77855 5.86967 5.91554 5.96464 5.97326 5.99376 6.00070 6.13821 6.16984 6.38918 6.47533 6.77740 6.90292 6.93312 6.99308 7.07256 7.26500 7.32557 7.51009 7.61521 7.84967 8.59599 9.05781 9.62976 11.13423 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.002639 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.712332 B =10607.901313 C =11213.845135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.088 3.912 4 H 0.037 0.963 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.117 4.117 8 C 0.048 3.952 9 N -0.532 5.532 10 C 0.056 3.944 11 C 0.057 3.943 12 N -0.689 5.689 13 C 0.064 3.936 14 C -0.076 4.076 15 H 0.072 0.928 16 C -0.135 4.135 17 C -0.009 4.009 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.337 0.663 44 H 0.022 0.978 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.068 0.932 48 H 0.033 0.967 49 H 0.013 0.987 50 H 0.011 0.989 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.675 12.075 15.679 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.020 4.020 4 H 0.055 0.945 5 C -0.150 4.150 6 C -0.160 4.160 7 C -0.155 4.155 8 C -0.080 4.080 9 N -0.257 5.257 10 C -0.071 4.071 11 C -0.072 4.072 12 N -0.321 5.321 13 C -0.064 4.064 14 C -0.095 4.095 15 H 0.090 0.910 16 C -0.193 4.193 17 C -0.047 4.047 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.706 3.294 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.156 0.844 44 H 0.040 0.960 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.052 0.948 49 H 0.032 0.968 50 H 0.029 0.971 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.304 11.195 16.348 29.094 hybrid contribution 0.648 1.746 -0.651 1.973 sum -20.656 12.941 15.697 28.992 Atomic orbital electron populations 1.21794 0.95665 1.01761 1.01679 1.21671 0.95513 0.95794 1.03099 1.21652 0.87069 0.96191 0.97121 0.94473 1.21667 1.00116 0.95459 0.97709 1.21593 0.95987 0.96880 1.01531 1.21591 0.95937 0.99748 0.98203 1.22208 1.00626 0.88336 0.96780 1.61918 1.09421 1.13174 1.41230 1.22122 0.95089 0.99418 0.90504 1.22036 0.94429 0.95361 0.95400 1.60445 1.07005 1.58433 1.06240 1.22145 0.86204 0.98154 0.99937 1.21033 0.97806 0.98780 0.91843 0.90996 1.21744 0.97714 1.00246 0.99559 1.19604 0.91017 0.96965 0.97075 1.21137 0.92817 1.26514 1.14561 0.90819 1.25035 0.98622 0.94964 0.95018 1.69918 1.16437 1.38093 1.30033 0.86800 0.81275 0.80876 0.80442 1.20341 1.21524 1.19134 0.92575 0.92521 0.92960 0.91030 0.91375 0.91495 0.91046 0.91897 0.92487 0.91030 0.91728 0.90037 0.95252 0.89257 0.95336 0.95567 0.90352 0.84414 0.95956 0.91437 0.94140 0.91313 0.94755 0.96839 0.97094 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.52 37.16 0.35 -0.66 16 2 C -0.12 -1.01 5.13 -26.73 -0.14 -1.14 16 3 C 0.09 0.76 1.92 -67.72 -0.13 0.63 16 4 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 5 C -0.11 -0.84 5.09 -26.65 -0.14 -0.97 16 6 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 7 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 8 C 0.05 0.45 5.03 -3.83 -0.02 0.43 16 9 N -0.53 -5.29 4.60 -226.68 -1.04 -6.33 16 10 C 0.06 0.61 4.71 -3.82 -0.02 0.59 16 11 C 0.06 0.70 5.18 -3.82 -0.02 0.68 16 12 N -0.69 -9.86 6.50 -113.78 -0.74 -10.60 16 13 C 0.06 1.07 5.14 -3.82 -0.02 1.05 16 14 C -0.08 -1.50 2.54 -90.62 -0.23 -1.74 16 15 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 16 C -0.14 -2.50 8.77 37.16 0.33 -2.17 16 17 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 18 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 19 H 0.07 2.25 7.30 -52.49 -0.38 1.86 16 20 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 21 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 22 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.06 0.34 6.82 -51.93 -0.35 -0.02 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.61 6.17 -51.93 -0.32 0.28 16 31 H 0.07 0.43 6.70 -51.93 -0.35 0.08 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.80 5.84 -51.93 -0.30 0.49 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.09 1.01 6.38 -51.93 -0.33 0.68 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.03 0.32 6.19 -51.93 -0.32 -0.01 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.34 4.59 6.98 -39.29 -0.27 4.31 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 48 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 49 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 50 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 51 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -29.73 375.70 -10.91 -40.65 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -10.04 Total: -0.50 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -0.86 Total: -18.83 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.01 Total: -44.30 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.73 -10.91 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.697 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds