Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46911 * 2 1 4 4 H 1.09000 * 109.45888 * 304.23643 * 3 2 1 5 5 C 1.53036 * 109.46303 * 64.20719 * 3 2 1 6 6 C 1.53114 * 109.27933 * 179.19640 * 5 3 2 7 7 C 1.53120 * 109.16047 * 302.34414 * 6 5 3 8 8 C 1.53041 * 109.27880 * 57.65032 * 7 6 5 9 9 N 1.46844 * 109.52771 * 300.82584 * 8 7 6 10 10 C 1.46900 * 111.00286 * 185.83615 * 9 8 7 11 11 C 1.53005 * 109.46722 * 51.61060 * 10 9 8 12 12 N 1.46900 * 109.46722 * 180.02562 * 11 10 9 13 13 C 1.46896 * 110.99764 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47037 * 180.02562 * 13 12 11 15 15 H 1.08999 * 109.46598 * 304.99525 * 14 13 12 16 16 C 1.52999 * 109.47224 * 64.99569 * 14 13 12 17 17 C 1.52997 * 109.47083 * 184.99888 * 14 13 12 18 18 C 1.50700 * 109.46948 * 174.99696 * 17 14 13 19 19 H 1.07997 * 120.00170 * 359.97438 * 18 17 14 20 20 C 1.37885 * 119.99703 * 179.97438 * 18 17 14 21 21 N 1.31512 * 119.99506 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00019 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47351 * 89.99945 * 22 20 18 24 24 H 1.48503 * 109.46625 * 209.99908 * 22 20 18 25 25 H 1.48500 * 109.47023 * 329.99415 * 22 20 18 26 26 H 1.08994 * 109.47448 * 294.82366 * 1 2 3 27 27 H 1.09001 * 109.47004 * 174.82137 * 1 2 3 28 28 H 1.09002 * 109.47408 * 54.82606 * 1 2 3 29 29 H 1.08994 * 109.47277 * 120.00173 * 2 1 3 30 30 H 1.09003 * 109.47004 * 240.00030 * 2 1 3 31 31 H 1.09006 * 109.50115 * 299.13142 * 5 3 2 32 32 H 1.09002 * 109.50407 * 59.24956 * 5 3 2 33 33 H 1.08993 * 109.52747 * 182.44111 * 6 5 3 34 34 H 1.09001 * 109.52438 * 62.24526 * 6 5 3 35 35 H 1.09004 * 109.50156 * 297.71535 * 7 6 5 36 36 H 1.08996 * 109.50571 * 177.59277 * 7 6 5 37 37 H 1.09002 * 109.46574 * 180.80666 * 8 7 6 38 38 H 1.09005 * 109.45052 * 60.83353 * 8 7 6 39 39 H 1.08995 * 109.46802 * 171.60635 * 10 9 8 40 40 H 1.08992 * 109.47031 * 291.60807 * 10 9 8 41 41 H 1.08995 * 109.46695 * 299.99674 * 11 10 9 42 42 H 1.09003 * 109.47084 * 59.99946 * 11 10 9 43 43 H 1.00898 * 110.99886 * 56.04182 * 12 11 10 44 44 H 1.09004 * 109.46913 * 299.99858 * 13 12 11 45 45 H 1.08994 * 109.47395 * 59.99777 * 13 12 11 46 46 H 1.08994 * 109.46910 * 60.00488 * 16 14 13 47 47 H 1.09000 * 109.46652 * 180.02562 * 16 14 13 48 48 H 1.08993 * 109.46970 * 300.00136 * 16 14 13 49 49 H 1.08997 * 109.47400 * 294.99833 * 17 14 13 50 50 H 1.09005 * 109.47104 * 54.99686 * 17 14 13 51 51 H 0.97008 * 119.99909 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9776 -0.8497 5 6 1.6180 2.1326 1.2992 6 6 2.1475 3.5692 1.3036 7 6 3.6704 3.5441 1.1467 8 6 4.0329 2.8130 -0.1480 9 7 3.5048 1.4436 -0.1029 10 6 3.9513 0.6684 -1.2681 11 6 5.4716 0.7785 -1.4017 12 7 5.9180 0.0039 -2.5673 13 6 7.3759 0.0862 -2.7270 14 6 7.8021 -0.7306 -3.9486 15 1 7.4326 -1.7513 -3.8500 16 6 7.2199 -0.0974 -5.2139 17 6 9.3290 -0.7479 -4.0431 18 6 9.7522 -1.6518 -5.1723 19 1 9.0066 -2.1631 -5.7631 20 6 11.0913 -1.8259 -5.4511 21 7 11.4605 -2.6151 -6.4361 22 14 12.3808 -0.9420 -4.4287 23 1 12.7655 -1.7927 -3.2740 24 1 13.5775 -0.6735 -5.2661 25 1 11.8247 0.3428 -3.9336 26 1 -0.3634 0.4314 0.9326 27 1 -0.3633 -1.0235 -0.0928 28 1 -0.3634 0.5920 -0.8400 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 0.5301 2.1455 1.3676 32 1 2.0303 1.5900 2.1499 33 1 1.8863 4.0508 2.2459 34 1 1.7051 4.1231 0.4755 35 1 4.1151 3.0237 1.9951 36 1 4.0490 4.5653 1.1062 37 1 5.1172 2.7808 -0.2556 38 1 3.5993 3.3416 -0.9970 39 1 3.6729 -0.3772 -1.1371 40 1 3.4781 1.0604 -2.1682 41 1 5.7499 1.8242 -1.5326 42 1 5.9448 0.3865 -0.5014 43 1 5.4444 0.3062 -3.4053 44 1 7.6680 1.1271 -2.8664 45 1 7.8620 -0.3113 -1.8361 46 1 7.5894 0.9233 -5.3124 47 1 7.5231 -0.6796 -6.0840 48 1 6.1321 -0.0851 -5.1464 49 1 9.6930 0.2623 -4.2305 50 1 9.7469 -1.1167 -3.1063 51 1 12.4026 -2.7380 -6.6321 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602548021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -46.315471 kcal Electronic energy + Delta-G solvation = -22696.798940 eV Core-core repulsion = 19628.789529 eV Total energy + Delta-G solvation = -3068.009410 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55895 -38.51146 -36.16365 -34.93221 -34.63310 -33.47835 -30.13379 -29.94470 -28.67485 -26.59404 -25.33652 -24.87468 -23.57926 -22.09551 -21.69783 -20.68205 -20.51285 -18.94681 -17.32712 -17.04123 -16.34625 -16.07055 -15.92769 -15.59161 -15.54050 -15.15556 -14.89845 -14.77942 -14.52294 -14.21185 -13.95982 -13.71288 -13.58396 -13.46940 -13.40641 -12.83686 -12.70150 -12.56143 -12.45426 -12.41842 -12.25414 -12.09957 -11.99768 -11.75084 -11.68285 -11.56526 -11.43938 -11.24159 -11.12568 -11.01091 -10.92115 -10.73319 -9.35542 -9.24012 -8.25923 -6.28180 1.36315 1.37456 1.49355 2.37889 2.71500 3.09273 3.41396 3.82394 3.84826 3.92213 4.01906 4.12587 4.17692 4.25177 4.25823 4.34467 4.39838 4.41017 4.46447 4.52102 4.57275 4.69139 4.73482 4.77657 4.80580 4.83310 4.94301 4.96241 4.98724 5.03700 5.05128 5.07831 5.08981 5.17532 5.21763 5.27252 5.29198 5.35459 5.36590 5.41708 5.50980 5.54318 5.69458 5.72858 6.04611 6.15712 6.22622 6.34881 6.48276 6.79359 7.35247 8.90850 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029414 B = 0.002639 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.712332 B =10607.901313 C =11213.845135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.088 3.912 4 H 0.032 0.968 5 C -0.109 4.109 6 C -0.121 4.121 7 C -0.115 4.115 8 C 0.047 3.953 9 N -0.539 5.539 10 C 0.065 3.935 11 C 0.064 3.936 12 N -0.693 5.693 13 C 0.078 3.922 14 C -0.072 4.072 15 H 0.053 0.947 16 C -0.129 4.129 17 C -0.007 4.007 18 C -0.518 4.518 19 H 0.035 0.965 20 C 0.000 4.000 21 N -0.954 5.954 22 Si 0.949 3.051 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.247 1.247 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.027 0.973 39 H 0.083 0.917 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.343 0.657 44 H 0.031 0.969 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.018 0.982 50 H 0.015 0.985 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.554 14.131 17.666 31.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.020 4.020 4 H 0.050 0.950 5 C -0.146 4.146 6 C -0.158 4.158 7 C -0.153 4.153 8 C -0.081 4.081 9 N -0.264 5.264 10 C -0.063 4.063 11 C -0.065 4.065 12 N -0.326 5.326 13 C -0.052 4.052 14 C -0.091 4.091 15 H 0.071 0.929 16 C -0.186 4.186 17 C -0.045 4.045 18 C -0.556 4.556 19 H 0.053 0.947 20 C -0.196 4.196 21 N -0.595 5.595 22 Si 0.772 3.228 23 H -0.194 1.194 24 H -0.212 1.212 25 H -0.170 1.170 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.162 0.838 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.083 0.917 49 H 0.036 0.964 50 H 0.033 0.967 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.213 13.261 18.348 31.716 hybrid contribution 0.840 1.049 -1.316 1.881 sum -21.373 14.310 17.032 30.849 Atomic orbital electron populations 1.21766 0.94440 1.02105 1.02218 1.21641 0.96575 0.95370 1.02271 1.21707 0.86206 0.96502 0.97628 0.94956 1.21655 1.00904 0.95459 0.96625 1.21594 0.95328 0.96698 1.02223 1.21582 0.96570 1.00019 0.97093 1.22236 1.00233 0.88085 0.97520 1.61947 1.10339 1.13531 1.40617 1.21971 0.94037 0.99308 0.90986 1.21987 0.95225 0.95274 0.94032 1.60359 1.05629 1.59365 1.07220 1.21867 0.87681 0.97735 0.97883 1.20896 0.95171 0.98746 0.94256 0.92862 1.21655 0.99716 0.99800 0.97435 1.19561 0.93974 0.95772 0.95144 1.21453 0.92255 1.26650 1.15289 0.94701 1.26013 1.01282 0.95941 0.96357 1.70076 1.17115 1.40143 1.32194 0.85682 0.78034 0.80336 0.78724 1.19356 1.21160 1.17038 0.91668 0.92244 0.92823 0.91656 0.92374 0.90203 0.91635 0.90701 0.92369 0.91614 0.90681 0.90591 0.95497 0.89919 0.95300 0.94829 0.91112 0.83795 0.95076 0.91629 0.93278 0.94596 0.91666 0.96355 0.96716 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.52 71.98 0.69 -1.06 16 2 C -0.12 -1.84 5.13 30.60 0.16 -1.69 16 3 C 0.09 1.39 1.92 44.94 0.09 1.48 16 4 H 0.03 0.55 8.14 -2.39 -0.02 0.54 16 5 C -0.11 -1.42 5.09 30.64 0.16 -1.26 16 6 C -0.12 -1.47 6.00 30.67 0.18 -1.29 16 7 C -0.11 -1.60 6.09 30.65 0.19 -1.42 16 8 C 0.05 0.80 5.03 86.33 0.43 1.24 16 9 N -0.54 -9.99 4.60 -871.10 -4.01 -14.00 16 10 C 0.06 1.32 4.71 86.30 0.41 1.72 16 11 C 0.06 1.45 5.18 86.30 0.45 1.90 16 12 N -0.69 -18.59 6.50 -513.88 -3.34 -21.93 16 13 C 0.08 2.43 5.14 86.31 0.44 2.88 16 14 C -0.07 -2.80 2.54 -10.79 -0.03 -2.83 16 15 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 16 C -0.13 -4.67 8.77 71.98 0.63 -4.04 16 17 C -0.01 -0.31 3.52 29.85 0.10 -0.21 16 18 C -0.52 -30.15 8.96 25.60 0.23 -29.92 16 19 H 0.03 2.23 7.30 -2.91 -0.02 2.21 16 20 C 0.00 0.01 5.47 84.66 0.46 0.47 16 21 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 22 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 26 H 0.06 0.65 6.82 -2.39 -0.02 0.64 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 0.99 6.17 -2.39 -0.01 0.98 16 31 H 0.08 0.84 6.70 -2.38 -0.02 0.83 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 1.36 5.84 -2.39 -0.01 1.35 16 38 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.08 1.79 6.38 -2.39 -0.02 1.78 16 40 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.03 0.73 6.19 -2.39 -0.01 0.72 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.34 8.58 6.98 -89.70 -0.63 7.95 16 44 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.03 1.51 6.95 -2.39 -0.02 1.50 16 48 H 0.06 1.93 6.68 -2.39 -0.02 1.92 16 49 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 50 H 0.01 0.68 7.57 -2.38 -0.02 0.66 16 51 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -64.58 375.70 -0.40 -64.98 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.18 Total: 18.61 kcal Atomic # 6 Polarization: -38.62 SS G_CDS: 4.59 Total: -34.03 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -7.05 Total: -96.47 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -64.58 -0.40 -64.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.668 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds