Wall clock time and date at job start Tue Mar 31 2020 05:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47187 * 2 1 4 4 H 1.09000 * 109.45541 * 55.27243 * 3 2 1 5 5 C 1.53039 * 109.46239 * 295.29965 * 3 2 1 6 6 C 1.53123 * 109.28108 * 180.80265 * 5 3 2 7 7 C 1.53123 * 109.15870 * 57.65273 * 6 5 3 8 8 C 1.53032 * 109.27860 * 302.34841 * 7 6 5 9 9 N 1.46841 * 109.46640 * 175.24747 * 3 2 1 10 10 C 1.46905 * 110.99908 * 305.85534 * 9 3 2 11 11 C 1.52996 * 109.46856 * 301.70341 * 10 9 3 12 12 N 1.46900 * 109.46630 * 179.46322 * 11 10 9 13 13 C 1.46909 * 110.99792 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46876 * 180.02562 * 13 12 11 15 15 H 1.08996 * 109.47203 * 54.99776 * 14 13 12 16 16 C 1.52998 * 109.46824 * 294.99759 * 14 13 12 17 17 C 1.53004 * 109.46635 * 174.99876 * 14 13 12 18 18 C 1.50700 * 109.46840 * 184.99543 * 17 14 13 19 19 H 1.08006 * 119.99875 * 0.02562 * 18 17 14 20 20 C 1.37875 * 119.99893 * 179.97438 * 18 17 14 21 21 N 1.31509 * 120.00299 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99841 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47079 * 90.00580 * 22 20 18 24 24 H 1.48502 * 109.47300 * 210.00266 * 22 20 18 25 25 H 1.48502 * 109.47238 * 330.00421 * 22 20 18 26 26 H 1.09000 * 109.47257 * 297.95926 * 1 2 3 27 27 H 1.08998 * 109.46830 * 57.95653 * 1 2 3 28 28 H 1.08999 * 109.47017 * 177.95706 * 1 2 3 29 29 H 1.08996 * 109.47351 * 239.99950 * 2 1 3 30 30 H 1.08996 * 109.47108 * 119.99854 * 2 1 3 31 31 H 1.09000 * 109.50357 * 60.86326 * 5 3 2 32 32 H 1.08993 * 109.50440 * 300.74627 * 5 3 2 33 33 H 1.09006 * 109.51968 * 297.75036 * 6 5 3 34 34 H 1.09000 * 109.52528 * 177.56054 * 6 5 3 35 35 H 1.08995 * 109.49991 * 182.40289 * 7 6 5 36 36 H 1.09004 * 109.52838 * 62.30710 * 7 6 5 37 37 H 1.08999 * 109.46333 * 299.15851 * 8 7 6 38 38 H 1.09006 * 109.45035 * 179.18851 * 8 7 6 39 39 H 1.08998 * 109.46809 * 181.70243 * 10 9 3 40 40 H 1.08998 * 109.46672 * 61.70273 * 10 9 3 41 41 H 1.08997 * 109.47027 * 59.46470 * 11 10 9 42 42 H 1.08996 * 109.47044 * 299.45735 * 11 10 9 43 43 H 1.00905 * 111.00403 * 56.04815 * 12 11 10 44 44 H 1.08989 * 109.47142 * 59.99769 * 13 12 11 45 45 H 1.09004 * 109.46704 * 299.99674 * 13 12 11 46 46 H 1.09004 * 109.47088 * 300.00259 * 16 14 13 47 47 H 1.08992 * 109.47236 * 60.00386 * 16 14 13 48 48 H 1.09005 * 109.47003 * 180.02562 * 16 14 13 49 49 H 1.09000 * 109.47132 * 304.99696 * 17 14 13 50 50 H 1.08996 * 109.47188 * 65.00151 * 17 14 13 51 51 H 0.96996 * 120.00408 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6090 1.9799 0.8447 5 6 1.6286 2.1288 -1.3045 6 6 2.1582 3.5655 -1.3089 7 6 3.6798 3.5408 -1.1395 8 6 4.0317 2.8136 0.1602 9 7 3.5039 1.4439 0.1147 10 6 3.9410 0.6721 1.2858 11 6 3.3148 1.2647 2.5497 12 7 3.7416 0.4851 3.7193 13 6 3.1578 1.0260 4.9541 14 6 3.6247 0.1902 6.1477 15 1 4.7139 0.1534 6.1616 16 6 3.0679 -1.2296 6.0249 17 6 3.1191 0.8260 7.4443 18 6 3.6798 0.0745 8.6241 19 1 4.3319 -0.7717 8.4650 20 6 3.3612 0.4678 9.9065 21 7 2.5676 1.4984 10.1003 22 14 4.0568 -0.4633 11.3690 23 1 5.3516 0.1425 11.7711 24 1 3.1016 -0.3880 12.5036 25 1 4.2701 -1.8845 10.9950 26 1 -0.3634 0.4818 0.9077 27 1 -0.3633 0.5452 -0.8711 28 1 -0.3633 -1.0270 -0.0366 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.5414 2.1415 -1.3819 32 1 2.0478 1.5839 -2.1503 33 1 1.7090 4.1217 -0.4860 34 1 1.9047 4.0444 -2.2546 35 1 4.0581 4.5622 -1.0989 36 1 4.1319 3.0184 -1.9827 37 1 3.5914 3.3446 1.0042 38 1 5.1151 2.7816 0.2765 39 1 5.0273 0.7147 1.3641 40 1 3.6250 -0.3652 1.1757 41 1 2.2285 1.2308 2.4672 42 1 3.6384 2.2991 2.6649 43 1 4.7481 0.4473 3.7811 44 1 2.0705 0.9901 4.8880 45 1 3.4800 2.0589 5.0861 46 1 1.9786 -1.1928 6.0109 47 1 3.4281 -1.6824 5.1012 48 1 3.4001 -1.8249 6.8754 49 1 3.4422 1.8660 7.4890 50 1 2.0303 0.7823 7.4699 51 1 2.3431 1.7749 11.0025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548023.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:21 Heat of formation + Delta-G solvation = -32.580350 kcal Electronic energy + Delta-G solvation = -23036.066991 eV Core-core repulsion = 19968.653180 eV Total energy + Delta-G solvation = -3067.413811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.94984 -36.92104 -34.79795 -34.18156 -33.12827 -31.74479 -29.42977 -28.09781 -26.68828 -25.13272 -24.50784 -23.74356 -22.21342 -22.03418 -20.91421 -19.48472 -18.86376 -16.42862 -16.17732 -15.85797 -15.43404 -15.19540 -14.61952 -14.46352 -14.24867 -14.05469 -13.68210 -13.50185 -13.37633 -12.98378 -12.75848 -12.36786 -12.31490 -11.99579 -11.88638 -11.71962 -11.50557 -11.42908 -11.36010 -11.16434 -10.95441 -10.88041 -10.81409 -10.65501 -10.50311 -10.28585 -10.22673 -10.17193 -9.69695 -9.15926 -8.97310 -8.39798 -8.32579 -8.10276 -5.97232 -3.98399 3.33145 3.39443 3.42989 3.67385 4.39455 4.49015 4.56701 4.61433 4.66688 4.80591 5.00926 5.03753 5.13586 5.16254 5.19007 5.29524 5.37493 5.38589 5.46640 5.49717 5.57208 5.62237 5.66959 5.71268 5.72828 5.82132 5.83406 5.87096 5.93054 5.95840 6.05221 6.09235 6.14357 6.16189 6.23978 6.41448 6.55336 6.69416 6.90944 6.98861 7.03403 7.18914 7.20833 7.36195 7.63892 7.70315 7.85792 8.02978 8.47042 9.08028 9.64995 11.14383 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.028342 B = 0.002757 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.709608 B =10153.003779 C =10446.349440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.083 3.917 4 H 0.044 0.956 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.051 3.949 9 N -0.529 5.529 10 C 0.053 3.947 11 C 0.022 3.978 12 N -0.683 5.683 13 C 0.065 3.935 14 C -0.082 4.082 15 H 0.053 0.947 16 C -0.122 4.122 17 C 0.027 3.973 18 C -0.512 4.512 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.023 0.977 43 H 0.336 0.664 44 H 0.064 0.936 45 H 0.022 0.978 46 H 0.038 0.962 47 H 0.042 0.958 48 H 0.053 0.947 49 H 0.011 0.989 50 H 0.016 0.984 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.612 1.758 -24.715 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.026 4.026 4 H 0.062 0.938 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.077 4.077 9 N -0.253 5.253 10 C -0.075 4.075 11 C -0.109 4.109 12 N -0.314 5.314 13 C -0.064 4.064 14 C -0.101 4.101 15 H 0.072 0.928 16 C -0.179 4.179 17 C -0.010 4.010 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.041 0.959 43 H 0.154 0.846 44 H 0.083 0.917 45 H 0.040 0.960 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.072 0.928 49 H 0.030 0.970 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.001 1.163 -25.091 25.137 hybrid contribution 0.509 0.938 1.872 2.155 sum -0.492 2.102 -23.218 23.319 Atomic orbital electron populations 1.21802 0.95680 1.01773 1.01741 1.21672 0.95594 0.95735 1.03046 1.21674 0.87347 0.96430 0.97106 0.93848 1.21679 1.00248 0.95398 0.97676 1.21599 0.95907 0.96985 1.01576 1.21577 0.96078 0.99708 0.98023 1.22113 0.99882 0.88733 0.96971 1.62234 1.10057 1.13432 1.39537 1.22253 0.99812 0.98833 0.86612 1.22633 1.01042 0.95173 0.92033 1.60500 1.14267 1.54135 1.02471 1.22144 0.99325 0.95972 0.88918 1.21199 0.99228 0.95233 0.94454 0.92842 1.21580 0.99719 0.96649 0.99988 1.19120 0.96430 0.95460 0.90019 1.21241 1.28839 1.14160 0.90813 0.92544 1.25025 0.95318 0.95200 0.99044 1.69963 1.36173 1.26258 1.21346 0.86627 0.78770 0.80360 0.82443 1.20764 1.21294 1.19859 0.92793 0.92665 0.92557 0.91404 0.90862 0.91457 0.91224 0.92352 0.91942 0.91771 0.91200 0.94680 0.90854 0.91014 0.89244 0.91145 0.95870 0.84632 0.91746 0.96004 0.94238 0.93915 0.92765 0.97021 0.96598 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.71 37.16 0.36 -0.93 16 2 C -0.12 -1.15 5.05 -26.73 -0.14 -1.28 16 3 C 0.08 0.79 1.31 -67.72 -0.09 0.70 16 4 H 0.04 0.48 6.60 -51.93 -0.34 0.14 16 5 C -0.11 -0.93 5.10 -26.65 -0.14 -1.07 16 6 C -0.12 -0.97 6.00 -26.60 -0.16 -1.13 16 7 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 8 C 0.05 0.48 5.05 -3.84 -0.02 0.46 16 9 N -0.53 -5.33 4.69 -226.69 -1.06 -6.39 16 10 C 0.05 0.57 5.06 -3.82 -0.02 0.55 16 11 C 0.02 0.28 4.90 -3.83 -0.02 0.26 16 12 N -0.68 -9.92 5.96 -113.78 -0.68 -10.60 16 13 C 0.07 1.15 5.08 -3.82 -0.02 1.13 16 14 C -0.08 -1.70 2.48 -90.62 -0.22 -1.92 16 15 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 17 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 18 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 19 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 20 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 22 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 6.48 -51.93 -0.34 0.08 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.77 5.93 -51.93 -0.31 0.47 16 31 H 0.07 0.51 6.55 -51.93 -0.34 0.17 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.03 0.37 6.76 -51.93 -0.35 0.02 16 38 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 39 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 40 H 0.09 1.00 6.21 -51.93 -0.32 0.67 16 41 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 42 H 0.02 0.30 6.70 -51.93 -0.35 -0.04 16 43 H 0.34 4.62 8.73 -39.29 -0.34 4.28 16 44 H 0.06 1.18 8.14 -51.94 -0.42 0.75 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 48 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -29.31 378.30 -11.17 -40.48 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -10.05 Total: -0.41 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -0.80 Total: -19.11 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -1.01 Total: -43.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.31 -11.17 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548023.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.899 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds