Wall clock time and date at job start Tue Mar 31 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47232 * 2 1 4 4 H 1.09001 * 109.45648 * 55.39694 * 3 2 1 5 5 C 1.53034 * 109.46496 * 295.42171 * 3 2 1 6 6 C 1.53123 * 109.28010 * 180.80351 * 5 3 2 7 7 C 1.53122 * 109.15641 * 57.65850 * 6 5 3 8 8 C 1.53036 * 109.27764 * 302.34313 * 7 6 5 9 9 N 1.46847 * 109.52481 * 59.18316 * 8 7 6 10 10 C 1.46901 * 111.00250 * 174.16094 * 9 8 7 11 11 C 1.52997 * 109.47279 * 66.98845 * 10 9 8 12 12 N 1.46896 * 109.47251 * 175.97569 * 11 10 9 13 13 C 1.46901 * 110.99843 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47069 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47319 * 305.00242 * 14 13 12 16 16 C 1.53003 * 109.47285 * 65.00021 * 14 13 12 17 17 C 1.52994 * 109.47732 * 185.00192 * 14 13 12 18 18 C 1.50697 * 109.47851 * 175.00087 * 17 14 13 19 19 H 1.07997 * 119.99517 * 359.97438 * 18 17 14 20 20 C 1.37874 * 120.00126 * 180.02562 * 18 17 14 21 21 N 1.31517 * 119.99899 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00158 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47173 * 89.99938 * 22 20 18 24 24 H 1.48500 * 109.46856 * 210.00372 * 22 20 18 25 25 H 1.48504 * 109.46966 * 329.99709 * 22 20 18 26 26 H 1.08998 * 109.47008 * 305.70704 * 1 2 3 27 27 H 1.09005 * 109.46865 * 65.70092 * 1 2 3 28 28 H 1.09001 * 109.47617 * 185.70148 * 1 2 3 29 29 H 1.09005 * 109.46700 * 240.00035 * 2 1 3 30 30 H 1.09003 * 109.46952 * 120.00051 * 2 1 3 31 31 H 1.08999 * 109.50495 * 300.75081 * 5 3 2 32 32 H 1.08998 * 109.50456 * 60.82727 * 5 3 2 33 33 H 1.08999 * 109.52339 * 177.55590 * 6 5 3 34 34 H 1.09000 * 109.52394 * 297.68910 * 6 5 3 35 35 H 1.09003 * 109.49763 * 182.40422 * 7 6 5 36 36 H 1.08997 * 109.50364 * 62.28689 * 7 6 5 37 37 H 1.09003 * 109.46152 * 299.16416 * 8 7 6 38 38 H 1.09005 * 109.46309 * 179.19977 * 8 7 6 39 39 H 1.08995 * 109.47037 * 186.99354 * 10 9 8 40 40 H 1.09003 * 109.46717 * 306.98826 * 10 9 8 41 41 H 1.09000 * 109.46921 * 295.98117 * 11 10 9 42 42 H 1.08999 * 109.46998 * 55.97435 * 11 10 9 43 43 H 1.00902 * 110.99481 * 56.04814 * 12 11 10 44 44 H 1.09000 * 109.47360 * 299.99802 * 13 12 11 45 45 H 1.08996 * 109.47074 * 60.00184 * 13 12 11 46 46 H 1.08991 * 109.47356 * 179.97438 * 16 14 13 47 47 H 1.09001 * 109.46920 * 300.00779 * 16 14 13 48 48 H 1.09002 * 109.46762 * 59.99880 * 16 14 13 49 49 H 1.09006 * 109.47061 * 295.00576 * 17 14 13 50 50 H 1.09005 * 109.46969 * 54.99400 * 17 14 13 51 51 H 0.97000 * 119.99795 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6107 1.9793 0.8460 5 6 1.6260 2.1297 -1.3032 6 6 2.1556 3.5664 -1.3074 7 6 3.6776 3.5414 -1.1412 8 6 4.0321 2.8132 0.1572 9 7 3.5042 1.4436 0.1118 10 6 3.9436 0.6709 1.2814 11 6 3.2988 1.2460 2.5441 12 7 3.6609 0.4156 3.7005 13 6 3.0586 0.9393 4.9338 14 6 3.4579 0.0507 6.1135 15 1 3.1827 -0.9822 5.8999 16 6 4.9697 0.1410 6.3313 17 6 2.7319 0.5213 7.3753 18 6 3.0287 -0.4263 8.5088 19 1 3.6707 -1.2793 8.3454 20 6 2.4799 -0.2050 9.7541 21 7 2.7394 -1.0317 10.7434 22 14 1.3689 1.2700 10.0365 23 1 -0.0392 0.8896 9.7575 24 1 1.4905 1.7184 11.4469 25 1 1.7724 2.3744 9.1294 26 1 -0.3633 0.5998 0.8345 27 1 -0.3633 0.4229 -0.9367 28 1 -0.3634 -1.0226 0.1021 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 2.0435 1.5854 -2.1502 32 1 0.5387 2.1419 -1.3787 33 1 1.9003 4.0459 -2.2524 34 1 1.7074 4.1223 -0.4840 35 1 4.0560 4.5628 -1.1007 36 1 4.1274 3.0193 -1.9858 37 1 3.5936 3.3437 1.0025 38 1 5.1157 2.7812 0.2715 39 1 3.6440 -0.3703 1.1623 40 1 5.0285 0.7292 1.3686 41 1 3.6544 2.2642 2.7022 42 1 2.2151 1.2537 2.4274 43 1 4.6629 0.3400 3.7916 44 1 3.4130 1.9552 5.1083 45 1 1.9732 0.9452 4.8339 46 1 5.2541 -0.4916 7.1720 47 1 5.4869 -0.1943 5.4324 48 1 5.2448 1.1739 6.5449 49 1 3.0738 1.5221 7.6393 50 1 1.6578 0.5415 7.1903 51 1 2.3536 -0.8758 11.6196 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602548025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:23 Heat of formation + Delta-G solvation = -28.758425 kcal Electronic energy + Delta-G solvation = -23100.772448 eV Core-core repulsion = 20033.524368 eV Total energy + Delta-G solvation = -3067.248079 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.99414 -37.11367 -34.87962 -34.20088 -33.13547 -31.82185 -29.46786 -28.35260 -27.16836 -25.29883 -24.53765 -23.78126 -22.15408 -21.80660 -20.93693 -19.44668 -18.90041 -16.85750 -16.28539 -16.02708 -15.52420 -15.25429 -14.75335 -14.44738 -14.11492 -13.91834 -13.73475 -13.64212 -13.45870 -13.03082 -12.84657 -12.58109 -12.37936 -12.14139 -11.98751 -11.86171 -11.74247 -11.66958 -11.46357 -11.22529 -11.01509 -10.99338 -10.81092 -10.65207 -10.53759 -10.39625 -10.20904 -9.90529 -9.66418 -9.49504 -9.06328 -8.51249 -8.44267 -8.21047 -6.01534 -3.98403 3.31472 3.38789 3.42311 3.63230 4.35309 4.47153 4.53248 4.55178 4.62832 4.76785 4.97027 4.99078 5.09606 5.13468 5.14455 5.26033 5.32012 5.33271 5.43271 5.46672 5.52114 5.56754 5.63156 5.64524 5.68119 5.68836 5.80345 5.83158 5.87625 5.90864 5.94517 6.01872 6.04638 6.11141 6.14952 6.21153 6.36664 6.45316 6.75013 6.89836 6.94942 6.97535 7.05798 7.23643 7.30165 7.48698 7.58830 7.83270 8.58030 9.04227 9.61438 11.11935 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.023544 B = 0.002983 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.983947 B = 9383.002801 C = 9600.416918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.082 3.918 4 H 0.044 0.956 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.051 3.949 9 N -0.528 5.528 10 C 0.053 3.947 11 C 0.021 3.979 12 N -0.684 5.684 13 C 0.063 3.937 14 C -0.075 4.075 15 H 0.072 0.928 16 C -0.135 4.135 17 C -0.008 4.008 18 C -0.513 4.513 19 H 0.074 0.926 20 C 0.065 3.935 21 N -0.905 5.905 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.267 1.267 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.023 0.977 42 H 0.072 0.928 43 H 0.339 0.661 44 H 0.021 0.979 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.034 0.966 48 H 0.039 0.961 49 H 0.013 0.987 50 H 0.010 0.990 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 8.067 -26.158 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.026 4.026 4 H 0.062 0.938 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.154 4.154 8 C -0.077 4.077 9 N -0.252 5.252 10 C -0.076 4.076 11 C -0.110 4.110 12 N -0.316 5.316 13 C -0.066 4.066 14 C -0.094 4.094 15 H 0.090 0.910 16 C -0.193 4.193 17 C -0.046 4.046 18 C -0.551 4.551 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.544 5.544 22 Si 0.706 3.294 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.192 1.192 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.090 0.910 43 H 0.157 0.843 44 H 0.039 0.961 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.031 0.969 50 H 0.028 0.972 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.473 7.365 -26.515 27.523 hybrid contribution -0.420 2.040 1.319 2.465 sum -0.893 9.405 -25.195 26.908 Atomic orbital electron populations 1.21785 0.95664 1.01872 1.01574 1.21676 0.95606 0.95673 1.03130 1.21700 0.87293 0.96483 0.97099 0.93847 1.21670 1.00258 0.95360 0.97693 1.21597 0.95888 0.97002 1.01577 1.21579 0.96078 0.99688 0.98045 1.22112 0.99866 0.88734 0.96954 1.62232 1.10034 1.13364 1.39587 1.22257 0.99644 0.99030 0.86625 1.22653 1.01297 0.94786 0.92240 1.60527 1.16007 1.51978 1.03110 1.22154 0.99068 0.96190 0.89170 1.21027 0.95565 0.99288 0.93543 0.90998 1.21744 0.95934 1.01051 1.00527 1.19600 0.94931 0.96856 0.93239 1.21133 1.30039 1.10819 0.93061 0.90789 1.25028 0.96252 0.96164 0.96147 1.69917 1.45278 1.37309 1.01944 0.86807 0.81435 0.83959 0.77223 1.20353 1.21475 1.19188 0.92843 0.92769 0.92485 0.91354 0.90791 0.91195 0.91473 0.91931 0.92399 0.91777 0.91152 0.94792 0.90851 0.89116 0.91038 0.95932 0.91010 0.84250 0.96053 0.91701 0.91286 0.94669 0.94164 0.96876 0.97183 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.51 37.16 0.35 -0.92 16 2 C -0.12 -1.14 5.01 -26.74 -0.13 -1.27 16 3 C 0.08 0.77 1.30 -67.72 -0.09 0.68 16 4 H 0.04 0.46 6.51 -51.93 -0.34 0.12 16 5 C -0.11 -0.90 5.10 -26.65 -0.14 -1.04 16 6 C -0.12 -0.93 6.00 -26.60 -0.16 -1.09 16 7 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 8 C 0.05 0.46 5.07 -3.83 -0.02 0.44 16 9 N -0.53 -5.16 4.69 -226.69 -1.06 -6.22 16 10 C 0.05 0.55 5.05 -3.83 -0.02 0.53 16 11 C 0.02 0.26 4.87 -3.83 -0.02 0.24 16 12 N -0.68 -9.65 6.50 -113.79 -0.74 -10.39 16 13 C 0.06 1.05 5.14 -3.82 -0.02 1.03 16 14 C -0.08 -1.49 2.54 -90.62 -0.23 -1.72 16 15 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 16 C -0.14 -2.49 8.78 37.16 0.33 -2.16 16 17 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 18 C -0.51 -14.57 8.96 -34.44 -0.31 -14.88 16 19 H 0.07 2.25 7.30 -52.49 -0.38 1.87 16 20 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 21 N -0.91 -28.11 13.96 55.43 0.77 -27.33 16 22 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.78 5.90 -51.93 -0.31 0.47 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.50 6.72 -51.93 -0.35 0.15 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.03 0.34 6.87 -51.93 -0.36 -0.02 16 38 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 39 H 0.09 0.99 6.28 -51.93 -0.33 0.67 16 40 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 41 H 0.02 0.28 6.91 -51.93 -0.36 -0.08 16 42 H 0.07 0.92 6.07 -51.93 -0.32 0.60 16 43 H 0.34 4.52 6.98 -39.29 -0.27 4.25 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 47 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 48 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 50 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 51 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -29.63 372.70 -10.81 -40.44 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -9.91 Total: 0.29 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.81 Total: -19.71 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -1.03 Total: -43.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.63 -10.81 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602548025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.685 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds