Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46905 * 109.46951 * 2 1 4 4 C 1.46839 * 111.00161 * 169.99811 * 3 2 1 5 5 C 1.53029 * 109.52544 * 185.84189 * 4 3 2 6 6 C 1.53123 * 109.27830 * 300.82338 * 5 4 3 7 7 C 1.52996 * 109.52573 * 177.55963 * 6 5 4 8 8 C 1.52993 * 109.47473 * 175.12452 * 7 6 5 9 9 N 1.46906 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99888 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47138 * 180.02562 * 10 9 8 12 12 H 1.08993 * 109.46750 * 305.00146 * 11 10 9 13 13 C 1.53003 * 109.46825 * 65.00038 * 11 10 9 14 14 C 1.52994 * 109.47452 * 184.99841 * 11 10 9 15 15 C 1.50697 * 109.47362 * 174.99701 * 14 11 10 16 16 H 1.07995 * 119.99842 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00160 * 179.97438 * 15 14 11 18 18 N 1.31517 * 119.99805 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47277 * 90.00556 * 19 17 15 21 21 H 1.48503 * 109.47170 * 210.00218 * 19 17 15 22 22 H 1.48499 * 109.47600 * 330.00027 * 19 17 15 23 23 C 1.53116 * 109.21419 * 57.62066 * 6 5 4 24 24 C 1.46848 * 110.99914 * 294.21287 * 3 2 1 25 25 H 1.09004 * 109.46480 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47201 * 299.99385 * 1 2 3 27 27 H 1.09000 * 109.47082 * 59.99982 * 1 2 3 28 28 H 1.09001 * 109.47201 * 240.00615 * 2 1 3 29 29 H 1.09000 * 109.47082 * 120.00018 * 2 1 3 30 30 H 1.09003 * 109.46074 * 65.82186 * 4 3 2 31 31 H 1.09004 * 109.46454 * 305.85912 * 4 3 2 32 32 H 1.09006 * 109.50511 * 180.88527 * 5 4 3 33 33 H 1.09000 * 109.50806 * 60.76037 * 5 4 3 34 34 H 1.09004 * 109.52182 * 297.68631 * 6 5 4 35 35 H 1.09004 * 109.47108 * 55.12564 * 7 6 5 36 36 H 1.09004 * 109.47368 * 295.12665 * 7 6 5 37 37 H 1.09004 * 109.46862 * 59.99962 * 8 7 6 38 38 H 1.09000 * 109.47250 * 299.99985 * 8 7 6 39 39 H 1.00904 * 110.99860 * 56.05050 * 9 8 7 40 40 H 1.08997 * 109.47334 * 299.99788 * 10 9 8 41 41 H 1.08995 * 109.47296 * 60.00089 * 10 9 8 42 42 H 1.09000 * 109.46878 * 180.02562 * 13 11 10 43 43 H 1.08999 * 109.47096 * 300.00137 * 13 11 10 44 44 H 1.08996 * 109.47132 * 60.00019 * 13 11 10 45 45 H 1.08997 * 109.47133 * 295.00502 * 14 11 10 46 46 H 1.09003 * 109.46947 * 54.99680 * 14 11 10 47 47 H 0.97005 * 119.99700 * 179.97438 * 18 17 15 48 48 H 1.09005 * 109.50270 * 62.31592 * 23 6 5 49 49 H 1.08998 * 109.50458 * 182.44088 * 23 6 5 50 50 H 1.08995 * 109.45942 * 294.17160 * 24 3 2 51 51 H 1.08997 * 109.46507 * 54.15471 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4679 1.4312 0.2381 5 6 3.9173 2.8875 0.3763 6 6 3.5674 3.6484 -0.9056 7 6 3.9591 5.1192 -0.7504 8 6 3.7220 5.8524 -2.0721 9 7 4.0976 7.2648 -1.9228 10 6 3.8822 8.0019 -3.1751 11 6 4.2842 9.4654 -2.9810 12 1 3.7414 9.8819 -2.1326 13 6 5.7886 9.5500 -2.7152 14 6 3.9441 10.2596 -4.2437 15 6 4.2258 11.7212 -4.0090 16 1 4.6095 12.0508 -3.0548 17 6 3.9946 12.6377 -5.0128 18 7 3.5278 12.2363 -6.1750 19 14 4.3445 14.4494 -4.7221 20 1 5.7459 14.7513 -5.1093 21 1 3.4169 15.2704 -5.5412 22 1 4.1487 14.7671 -3.2848 23 6 2.0608 3.5441 -1.1582 24 6 1.6650 2.0686 -1.2503 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9887 0.9684 -0.6002 31 1 3.7027 0.8902 1.1547 32 1 4.9948 2.9222 0.5373 33 1 3.4072 3.3471 1.2229 34 1 4.1085 3.2141 -1.7463 35 1 5.0131 5.1880 -0.4808 36 1 3.3534 5.5760 0.0323 37 1 2.6681 5.7836 -2.3417 38 1 4.3278 5.3957 -2.8547 39 1 5.0529 7.3538 -1.6102 40 1 4.4891 7.5606 -3.9655 41 1 2.8294 7.9477 -3.4521 42 1 6.0750 10.5925 -2.5765 43 1 6.0310 8.9842 -1.8156 44 1 6.3315 9.1335 -3.5636 45 1 4.5529 9.9008 -5.0736 46 1 2.8890 10.1267 -4.4832 47 1 3.3649 12.8812 -6.8811 48 1 1.5206 4.0142 -0.3363 49 1 1.8127 4.0474 -2.0926 50 1 2.1942 1.6028 -2.0816 51 1 0.5903 1.9907 -1.4146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602558313.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -38.303452 kcal Electronic energy + Delta-G solvation = -22198.751821 eV Core-core repulsion = 19131.089838 eV Total energy + Delta-G solvation = -3067.661983 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.60795 -37.22566 -35.69473 -33.77631 -32.15011 -31.23486 -30.70690 -28.36094 -26.77675 -25.40878 -23.87272 -23.68294 -22.23107 -21.62624 -21.00750 -19.89606 -18.86857 -16.47469 -16.43533 -15.79351 -15.46079 -14.93340 -14.69932 -14.52697 -14.33276 -14.20503 -13.89079 -13.54146 -13.33585 -13.15069 -12.50868 -12.43158 -12.28404 -12.01964 -11.94772 -11.91923 -11.55047 -11.47436 -11.40971 -11.27471 -11.04946 -10.83961 -10.76159 -10.69384 -10.44651 -10.31546 -10.22780 -10.12322 -9.67970 -9.11137 -8.92805 -8.62496 -8.30618 -8.07744 -5.95288 -3.96266 3.34635 3.40892 3.44610 3.56821 4.31305 4.47887 4.50654 4.56720 4.71861 4.76308 4.90260 5.00698 5.11129 5.14973 5.17123 5.24633 5.30027 5.37848 5.40404 5.44941 5.50134 5.53181 5.61495 5.67429 5.73006 5.80127 5.82000 5.86417 5.88269 5.93317 5.96041 6.08036 6.09183 6.21333 6.29486 6.35561 6.51097 6.59700 6.79658 6.81082 6.99048 7.13664 7.20908 7.43800 7.71174 7.73824 7.89414 8.05275 8.49300 9.10144 9.66906 11.16240 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.040966 B = 0.002167 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.333404 B =12916.181349 C =13337.261960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.539 5.539 4 C 0.056 3.944 5 C -0.111 4.111 6 C -0.087 4.087 7 C -0.110 4.110 8 C 0.057 3.943 9 N -0.692 5.692 10 C 0.065 3.935 11 C -0.085 4.085 12 H 0.065 0.935 13 C -0.134 4.134 14 C 0.028 3.972 15 C -0.512 4.512 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.113 4.113 24 C 0.053 3.947 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.336 0.664 40 H 0.022 0.978 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.031 0.969 44 H 0.040 0.960 45 H 0.014 0.986 46 H 0.015 0.985 47 H 0.259 0.741 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.030 0.970 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -25.085 12.320 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.264 5.264 4 C -0.071 4.071 5 C -0.148 4.148 6 C -0.106 4.106 7 C -0.148 4.148 8 C -0.073 4.073 9 N -0.323 5.323 10 C -0.064 4.064 11 C -0.104 4.104 12 H 0.084 0.916 13 C -0.191 4.191 14 C -0.010 4.010 15 C -0.550 4.550 16 H 0.074 0.926 17 C -0.147 4.147 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.151 4.151 24 C -0.075 4.075 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.155 0.845 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.356 -24.593 12.793 27.822 hybrid contribution 1.329 0.219 -1.290 1.865 sum -1.028 -24.374 11.503 26.972 Atomic orbital electron populations 1.21813 0.94821 1.01461 1.02649 1.22058 0.96220 0.88972 1.00518 1.61964 1.13845 1.15215 1.35385 1.22076 0.87314 0.97483 1.00271 1.21630 1.00514 0.94276 0.98424 1.21176 0.96197 0.95560 0.97640 1.21587 1.01378 0.93642 0.98207 1.21998 1.00830 0.88493 0.95936 1.60580 1.29192 1.10079 1.32465 1.22123 1.00493 0.95064 0.88710 1.21225 0.95359 0.92378 1.01402 0.91648 1.21739 0.96847 1.01863 0.98656 1.19111 0.96624 0.94089 0.91167 1.21245 1.42710 0.92269 0.98806 0.92552 1.25033 0.95485 0.98848 0.95297 1.69972 1.45655 1.34223 1.03847 0.86618 0.77992 0.85380 0.78160 1.20792 1.21319 1.19880 1.21697 0.95745 0.95051 1.02566 1.22163 1.00809 0.94900 0.89631 0.92412 0.91765 0.92573 0.95181 0.90943 0.95169 0.90960 0.91581 0.90893 0.91786 0.92298 0.90920 0.91114 0.96031 0.84540 0.96017 0.91584 0.91885 0.94954 0.94092 0.96803 0.96670 0.93130 0.90845 0.91138 0.95190 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.84 37.16 0.37 -0.59 16 2 C 0.05 0.36 5.68 -3.82 -0.02 0.34 16 3 N -0.54 -4.58 4.66 -234.67 -1.09 -5.68 16 4 C 0.06 0.45 5.46 -3.84 -0.02 0.42 16 5 C -0.11 -0.90 5.38 -26.65 -0.14 -1.05 16 6 C -0.09 -0.78 2.25 -90.50 -0.20 -0.98 16 7 C -0.11 -1.13 4.95 -26.74 -0.13 -1.27 16 8 C 0.06 0.71 5.44 -3.82 -0.02 0.69 16 9 N -0.69 -10.46 6.50 -113.78 -0.74 -11.20 16 10 C 0.06 1.16 5.14 -3.82 -0.02 1.14 16 11 C -0.08 -1.77 2.55 -90.62 -0.23 -2.00 16 12 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 13 C -0.13 -2.54 8.77 37.16 0.33 -2.21 16 14 C 0.03 0.72 4.45 -27.89 -0.12 0.59 16 15 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 16 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 19 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.11 -1.03 5.08 -26.65 -0.14 -1.17 16 24 C 0.05 0.45 5.29 -3.83 -0.02 0.43 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 28 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 29 H 0.07 0.47 7.99 -51.93 -0.41 0.05 16 30 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.51 8.02 -51.93 -0.42 0.10 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.90 6.63 -51.93 -0.34 0.56 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.34 4.81 6.98 -39.29 -0.27 4.54 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 43 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.66 6.70 -51.93 -0.35 0.31 16 50 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.08 0.62 6.21 -51.93 -0.32 0.30 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -29.72 383.94 -11.37 -41.09 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -10.28 Total: -1.39 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -0.77 Total: -18.99 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -1.10 Total: -43.38 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.72 -11.37 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602558313.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.788 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds